Wall clock time and date at job start Tue Mar 31 2020 18:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34230 * 117.00200 * 2 1 4 4 O 1.20830 * 119.99653 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00319 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.51259 * 304.89956 * 5 3 2 7 7 C 1.53301 * 109.51470 * 64.99978 * 5 3 2 8 8 N 1.47152 * 108.38625 * 172.22646 * 7 5 3 9 9 C 1.34779 * 120.97779 * 129.44219 * 8 7 5 10 10 O 1.21553 * 119.99591 * 186.29829 * 9 8 7 11 11 C 1.47880 * 120.00208 * 6.29554 * 9 8 7 12 12 C 1.39921 * 120.02455 * 215.75047 * 11 9 8 13 13 C 1.38329 * 120.35853 * 179.97438 * 12 11 9 14 14 C 1.37753 * 120.41199 * 0.02562 * 13 12 11 15 15 C 1.40746 * 120.04153 * 0.02562 * 14 13 12 16 16 C 1.41440 * 120.18140 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99965 * 156.39555 * 16 15 14 18 18 C 1.39937 * 119.99722 * 336.39740 * 16 15 14 19 19 N 1.30828 * 119.99858 * 343.55199 * 18 16 15 20 20 Si 1.86794 * 119.99806 * 163.55938 * 18 16 15 21 21 H 1.48503 * 109.47252 * 94.37991 * 20 18 16 22 22 H 1.48503 * 109.47139 * 214.37644 * 20 18 16 23 23 H 1.48497 * 109.47483 * 334.37536 * 20 18 16 24 24 C 1.38998 * 120.02909 * 36.02742 * 11 9 8 25 25 C 1.47151 * 118.03457 * 309.71709 * 8 7 5 26 26 C 1.52873 * 108.61033 * 50.22834 * 25 8 7 27 27 H 1.09002 * 109.37094 * 67.81071 * 26 25 8 28 28 C 1.52997 * 109.58554 * 187.92280 * 26 25 8 29 29 O 1.42963 * 109.51545 * 184.74606 * 5 3 2 30 30 H 1.09004 * 109.47421 * 299.99804 * 1 2 3 31 31 H 1.09005 * 109.47216 * 60.00164 * 1 2 3 32 32 H 1.09001 * 109.47171 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.67682 * 52.50100 * 7 5 3 34 34 H 1.08996 * 109.70766 * 291.97158 * 7 5 3 35 35 H 1.07998 * 119.82205 * 359.97438 * 12 11 9 36 36 H 1.08001 * 119.79655 * 180.02562 * 13 12 11 37 37 H 1.08005 * 119.97984 * 180.02562 * 14 13 12 38 38 H 0.97003 * 119.99527 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.19974 * 0.02562 * 24 11 9 40 40 H 1.08994 * 109.67847 * 170.00995 * 25 8 7 41 41 H 1.09003 * 109.67705 * 290.55816 * 25 8 7 42 42 H 1.08995 * 109.47406 * 179.87985 * 28 26 25 43 43 H 1.09005 * 109.46859 * 299.88149 * 28 26 25 44 44 H 1.09000 * 109.46690 * 59.87875 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9603 0.7071 0.8435 7 6 4.1101 0.6916 -1.3086 8 7 5.5578 0.9493 -1.3656 9 6 6.4292 -0.0434 -1.6332 10 8 7.6251 0.1625 -1.5635 11 6 5.9303 -1.3831 -2.0116 12 6 6.6127 -2.5293 -1.5891 13 6 6.1519 -3.7859 -1.9386 14 6 5.0167 -3.9236 -2.7068 15 6 4.3176 -2.7822 -3.1420 16 6 3.1521 -2.9202 -3.9312 17 1 2.4163 -2.1299 -3.9504 18 6 2.9523 -4.0807 -4.6871 19 7 3.9553 -4.8857 -4.9272 20 14 1.2537 -4.4804 -5.3536 21 1 1.1327 -3.9658 -6.7413 22 1 1.0552 -5.9521 -5.3524 23 1 0.2228 -3.8413 -4.4969 24 6 4.7866 -1.5047 -2.7920 25 6 6.0263 2.3217 -1.1156 26 6 5.3888 2.8266 0.1789 27 1 5.7900 2.2650 1.0226 28 6 5.7012 4.3135 0.3584 29 8 3.9728 2.6409 0.1120 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.6185 1.1699 -2.1557 34 1 3.9271 -0.3825 -1.3366 35 1 7.5039 -2.4325 -0.9869 36 1 6.6854 -4.6645 -1.6072 37 1 4.6629 -4.9081 -2.9752 38 1 3.8167 -5.6904 -5.4509 39 1 4.2595 -0.6226 -3.1245 40 1 7.1116 2.3264 -1.0151 41 1 5.7309 2.9668 -1.9430 42 1 5.2442 4.6721 1.2807 43 1 6.7810 4.4543 0.4094 44 1 5.3013 4.8734 -0.4869 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177720616.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:18 Heat of formation + Delta-G solvation = -145.537923 kcal Electronic energy + Delta-G solvation = -29466.244932 eV Core-core repulsion = 25348.498927 eV Total energy + Delta-G solvation = -4117.746005 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.12427 -41.24559 -39.79435 -38.79455 -37.58263 -36.06893 -35.52882 -34.38453 -31.84515 -31.67343 -30.74360 -28.49003 -27.60006 -27.21767 -25.81457 -23.92559 -22.74873 -22.45869 -21.95535 -20.85319 -19.19396 -18.84349 -18.27208 -17.96487 -17.73774 -17.36533 -17.10429 -17.04738 -16.58308 -16.41174 -16.04776 -15.45100 -15.13606 -15.00701 -14.63467 -14.46529 -14.23815 -14.15866 -13.77495 -13.60662 -13.51485 -13.18816 -13.12923 -12.95658 -12.89173 -12.81621 -12.49893 -12.46787 -12.23263 -12.03549 -11.98174 -11.84778 -11.57974 -11.39505 -11.33482 -11.04113 -10.84903 -9.83382 -9.45755 -9.35692 -8.63070 -6.35296 0.43090 0.87619 0.93397 1.18887 1.43503 1.49313 1.57231 1.70001 1.91486 2.22999 2.73290 2.74996 3.32403 3.40369 3.62635 3.65709 3.70946 3.86193 3.98705 4.09468 4.23457 4.28478 4.34690 4.38204 4.45846 4.51878 4.58405 4.69197 4.72490 4.80976 4.93922 4.94761 5.04432 5.11349 5.19352 5.21795 5.28207 5.34948 5.52936 5.78825 5.81598 5.98393 6.02641 6.15812 6.23582 6.55676 6.62480 6.90690 6.94069 7.01253 8.33280 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010598 B = 0.004511 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.451303 B = 6205.690545 C = 8168.074991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.479 3.521 4 O -0.512 6.512 5 C 0.093 3.907 6 H 0.116 0.884 7 C 0.083 3.917 8 N -0.609 5.609 9 C 0.575 3.425 10 O -0.572 6.572 11 C -0.120 4.120 12 C -0.187 4.187 13 C -0.110 4.110 14 C -0.160 4.160 15 C 0.079 3.921 16 C -0.487 4.487 17 H 0.083 0.917 18 C 0.037 3.963 19 N -0.824 5.824 20 Si 0.978 3.022 21 H -0.268 1.268 22 H -0.269 1.269 23 H -0.252 1.252 24 C -0.195 4.195 25 C 0.077 3.923 26 C 0.077 3.923 27 H 0.073 0.927 28 C -0.135 4.135 29 O -0.367 6.367 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.130 0.870 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.289 0.711 39 H 0.113 0.887 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.495 9.378 9.012 13.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.270 6.270 3 C 0.320 3.680 4 O -0.400 6.400 5 C 0.033 3.967 6 H 0.134 0.866 7 C -0.040 4.040 8 N -0.341 5.341 9 C 0.367 3.633 10 O -0.452 6.452 11 C -0.123 4.123 12 C -0.208 4.208 13 C -0.129 4.129 14 C -0.180 4.180 15 C 0.076 3.924 16 C -0.516 4.516 17 H 0.101 0.899 18 C -0.178 4.178 19 N -0.450 5.450 20 Si 0.799 3.201 21 H -0.193 1.193 22 H -0.193 1.193 23 H -0.176 1.176 24 C -0.215 4.215 25 C -0.045 4.045 26 C 0.019 3.981 27 H 0.091 0.909 28 C -0.192 4.192 29 O -0.286 6.286 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.148 0.852 33 H 0.101 0.899 34 H 0.140 0.860 35 H 0.125 0.875 36 H 0.137 0.863 37 H 0.131 0.869 38 H 0.100 0.900 39 H 0.131 0.869 40 H 0.122 0.878 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.117 0.883 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.160 9.738 8.919 13.845 hybrid contribution -0.520 -0.597 -0.635 1.016 sum -4.680 9.141 8.283 13.193 Atomic orbital electron populations 1.23649 0.73768 1.05989 1.03001 1.86536 1.25702 1.31471 1.83323 1.22944 0.90740 0.81857 0.72416 1.90659 1.67087 1.37090 1.45121 1.21728 0.88221 0.86250 1.00495 0.86632 1.22686 0.80312 1.04654 0.96388 1.47951 1.06434 1.09129 1.70620 1.18739 0.85104 0.84626 0.74859 1.90660 1.16566 1.83526 1.54476 1.19459 0.97921 0.91744 1.03214 1.20585 1.01391 0.91611 1.07170 1.20907 0.96898 0.96463 0.98605 1.21621 0.97391 0.99330 0.99640 1.17837 0.92824 0.91090 0.90611 1.19822 1.04904 1.03178 1.23668 0.89865 1.26709 1.01813 0.94680 0.94579 1.69846 1.33377 1.11802 1.29987 0.85248 0.77625 0.78387 0.78878 1.19313 1.19337 1.17581 1.21292 0.97363 0.97071 1.05760 1.22495 1.01897 0.81167 0.98941 1.22705 0.79078 1.00107 0.96179 0.90898 1.21738 1.03444 0.90335 1.03726 1.88002 1.23997 1.22073 1.94544 0.90916 0.91663 0.85186 0.89884 0.86001 0.87494 0.86285 0.86854 0.90040 0.86928 0.87764 0.89587 0.90664 0.88318 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.56 113.37 1.20 1.76 16 2 O -0.35 -9.42 10.56 -51.41 -0.54 -9.96 16 3 C 0.48 13.71 7.29 71.23 0.52 14.23 16 4 O -0.51 -16.86 16.26 28.36 0.46 -16.39 16 5 C 0.09 2.51 3.30 29.95 0.10 2.61 16 6 H 0.12 2.78 8.14 -2.38 -0.02 2.76 16 7 C 0.08 2.49 4.21 86.36 0.36 2.86 16 8 N -0.61 -19.51 3.03 -821.52 -2.49 -21.99 16 9 C 0.57 22.84 7.38 86.80 0.64 23.48 16 10 O -0.57 -25.11 16.30 -3.88 -0.06 -25.17 16 11 C -0.12 -5.23 5.25 -20.13 -0.11 -5.33 16 12 C -0.19 -8.20 9.62 22.70 0.22 -7.99 16 13 C -0.11 -4.88 10.01 22.18 0.22 -4.65 16 14 C -0.16 -7.83 8.70 22.77 0.20 -7.63 16 15 C 0.08 3.89 5.59 -21.32 -0.12 3.77 16 16 C -0.49 -23.81 9.06 23.47 0.21 -23.60 16 17 H 0.08 3.86 7.90 -2.91 -0.02 3.83 16 18 C 0.04 1.74 5.18 85.25 0.44 2.18 16 19 N -0.82 -40.39 10.81 21.82 0.24 -40.15 16 20 Si 0.98 35.22 29.59 68.60 2.03 37.25 16 21 H -0.27 -9.51 7.11 99.48 0.71 -8.81 16 22 H -0.27 -9.34 7.11 99.48 0.71 -8.63 16 23 H -0.25 -8.71 7.11 99.48 0.71 -8.01 16 24 C -0.19 -8.72 7.14 23.01 0.16 -8.55 16 25 C 0.08 1.96 5.92 86.21 0.51 2.47 16 26 C 0.08 1.67 3.39 30.55 0.10 1.78 16 27 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 28 C -0.14 -2.10 9.57 71.98 0.69 -1.41 16 29 O -0.37 -9.81 9.57 -129.97 -1.24 -11.05 16 30 H 0.07 1.27 8.13 -2.38 -0.02 1.25 16 31 H 0.06 1.29 8.13 -2.38 -0.02 1.27 16 32 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.08 2.46 7.96 -2.39 -0.02 2.44 16 34 H 0.12 4.10 4.82 -2.39 -0.01 4.09 16 35 H 0.11 4.43 8.00 -2.91 -0.02 4.40 16 36 H 0.12 4.58 8.06 -2.91 -0.02 4.55 16 37 H 0.11 5.77 6.02 -2.91 -0.02 5.75 16 38 H 0.29 12.83 8.30 -92.71 -0.77 12.06 16 39 H 0.11 4.68 6.11 -2.91 -0.02 4.66 16 40 H 0.10 2.71 7.06 -2.39 -0.02 2.70 16 41 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.10 1.13 8.14 -2.38 -0.02 1.12 16 44 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -63.29 367.05 4.77 -58.52 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: 1.02 Total: 33.00 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 5.35 Total: -4.04 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -2.25 Total: -62.15 kcal Atomic # 8 Polarization: -61.19 SS G_CDS: -1.39 Total: -62.58 kcal Atomic # 14 Polarization: 35.22 SS G_CDS: 2.03 Total: 37.25 kcal Total: -63.29 4.77 -58.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177720616.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.022 kcal (2) G-P(sol) polarization free energy of solvation -63.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds