Wall clock time and date at job start Tue Mar 31 2020 18:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.44087 * 2 1 4 4 O 1.42999 * 109.44509 * 119.93281 * 2 1 3 5 5 C 1.35673 * 116.74139 * 166.38688 * 4 2 1 6 6 C 1.39414 * 119.55551 * 327.23208 * 5 4 2 7 7 C 1.38395 * 120.07439 * 179.91299 * 6 5 4 8 8 C 1.38596 * 120.16907 * 0.06331 * 7 6 5 9 9 C 1.37759 * 120.42810 * 359.67819 * 8 7 6 10 10 C 1.39838 * 120.71784 * 147.18765 * 5 4 2 11 11 C 1.47403 * 120.24485 * 0.03627 * 10 5 4 12 12 O 1.21507 * 119.99706 * 0.02562 * 11 10 5 13 13 O 1.34751 * 119.99937 * 180.02562 * 11 10 5 14 14 C 1.45206 * 116.99792 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47129 * 180.02562 * 14 13 11 16 16 C 1.53008 * 109.46800 * 299.99943 * 15 14 13 17 17 C 1.53001 * 109.46963 * 59.99628 * 15 14 13 18 18 C 1.50696 * 109.46919 * 179.97438 * 15 14 13 19 19 H 1.07999 * 120.00202 * 0.02562 * 18 15 14 20 20 C 1.37884 * 119.99746 * 179.97438 * 18 15 14 21 21 N 1.31514 * 119.99981 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 119.99781 * 180.02562 * 20 18 15 23 23 H 1.48501 * 109.47364 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46870 * 120.00150 * 22 20 18 25 25 H 1.48508 * 109.46883 * 239.99960 * 22 20 18 26 26 N 1.40251 * 119.22109 * 359.89231 * 6 5 4 27 27 C 1.35087 * 118.95860 * 15.44605 * 26 6 5 28 28 O 1.21296 * 120.13993 * 181.68426 * 27 26 6 29 29 H 1.09002 * 109.46732 * 300.06461 * 1 2 3 30 30 H 1.08994 * 109.47476 * 60.06384 * 1 2 3 31 31 H 1.08999 * 109.46843 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.91807 * 180.02562 * 7 6 5 33 33 H 1.08004 * 119.79136 * 179.97438 * 8 7 6 34 34 H 1.07993 * 119.96090 * 180.29150 * 9 8 7 35 35 H 1.09004 * 109.47122 * 299.99965 * 14 13 11 36 36 H 1.09000 * 109.47070 * 59.99991 * 14 13 11 37 37 H 1.09002 * 109.47021 * 59.99682 * 16 15 14 38 38 H 1.09001 * 109.46630 * 179.97438 * 16 15 14 39 39 H 1.09000 * 109.47188 * 300.00076 * 16 15 14 40 40 H 1.08996 * 109.46778 * 60.00354 * 17 15 14 41 41 H 1.09001 * 109.46652 * 180.02562 * 17 15 14 42 42 H 1.08992 * 109.47514 * 300.00067 * 17 15 14 43 43 H 0.96991 * 120.00238 * 179.97438 * 21 20 18 44 44 H 0.97010 * 120.52172 * 195.47619 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8928 1.0279 0.0000 4 8 2.0061 -0.6728 1.1686 5 6 3.3197 -1.0116 1.1854 6 6 3.9572 -1.3528 -0.0065 7 6 5.2974 -1.6984 -0.0020 8 6 6.0102 -1.7079 1.1865 9 6 5.3954 -1.3680 2.3715 10 6 4.0397 -1.0210 2.3842 11 6 3.3771 -0.6621 3.6510 12 8 2.2009 -0.3569 3.6562 13 8 4.0757 -0.6723 4.8032 14 6 3.3584 -0.3083 6.0122 15 6 4.3090 -0.3764 7.2092 16 6 4.8533 -1.7997 7.3479 17 6 5.4711 0.5952 6.9934 18 6 3.5648 0.0019 8.4637 19 1 2.5184 0.2642 8.4126 20 6 4.2196 0.0122 9.6771 21 7 5.4937 -0.3077 9.7395 22 14 3.2969 0.4805 11.2324 23 1 1.8853 0.7945 10.8949 24 1 3.3358 -0.6529 12.1911 25 1 3.9361 1.6714 11.8476 26 7 3.2247 -1.3412 -1.2025 27 6 2.0312 -0.7092 -1.2323 28 8 1.3658 -0.7119 -2.2465 29 1 -0.3633 0.5149 0.8894 30 1 -0.3634 0.5128 -0.8905 31 1 -0.3633 -1.0277 0.0005 32 1 5.7888 -1.9619 -0.9269 33 1 7.0557 -1.9790 1.1831 34 1 5.9592 -1.3735 3.2926 35 1 2.9711 0.7058 5.9135 36 1 2.5303 -1.0003 6.1656 37 1 5.3916 -2.0728 6.4403 38 1 5.5308 -1.8480 8.2004 39 1 4.0254 -2.4919 7.5015 40 1 5.0833 1.6091 6.8946 41 1 6.1485 0.5464 7.8460 42 1 6.0094 0.3220 6.0860 43 1 5.9544 -0.3002 10.5930 44 1 3.5695 -1.7804 -1.9958 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184810834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:56 Heat of formation + Delta-G solvation = -129.082255 kcal Electronic energy + Delta-G solvation = -28827.881198 eV Core-core repulsion = 24710.848764 eV Total energy + Delta-G solvation = -4117.032433 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.89182 -39.97394 -38.92447 -37.87341 -36.51578 -35.44887 -34.79459 -32.41526 -31.38582 -30.80951 -29.31038 -26.11375 -25.62220 -25.34133 -25.10690 -23.93707 -23.57508 -21.05520 -19.99013 -19.28056 -18.82604 -18.20530 -17.46218 -16.93508 -16.30140 -15.95953 -15.77675 -15.73941 -15.25599 -15.05905 -14.75886 -14.66057 -14.62760 -13.50379 -13.27719 -13.17962 -12.93120 -12.88340 -12.62181 -12.43784 -12.35172 -11.85060 -11.78099 -11.50115 -11.47809 -11.19470 -11.12938 -10.96727 -10.67522 -10.42003 -10.39767 -10.20670 -10.02954 -9.88183 -9.41229 -9.31546 -9.05714 -8.75412 -8.38367 -8.31585 -6.02742 -4.13947 0.44157 0.74279 1.89365 2.31887 2.72026 2.87569 3.08202 3.26657 3.35225 3.39995 3.55668 3.63274 4.25664 4.39058 4.43741 4.56516 4.62501 4.82241 4.90985 5.04539 5.24037 5.33505 5.44991 5.45922 5.59421 5.76423 5.84957 6.04620 6.05671 6.11309 6.12111 6.30889 6.38884 6.47612 6.73691 6.94752 6.98140 7.05283 7.12989 7.14823 7.38468 7.40302 7.61966 7.70032 8.04985 8.14903 8.26255 8.39352 8.86324 9.51691 10.98542 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021719 B = 0.002741 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.857211 B =10212.020720 C =11281.894933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.074 3.926 3 H 0.107 0.893 4 O -0.269 6.269 5 C 0.139 3.861 6 C 0.071 3.929 7 C -0.093 4.093 8 C -0.125 4.125 9 C -0.049 4.049 10 C -0.109 4.109 11 C 0.497 3.503 12 O -0.493 6.493 13 O -0.344 6.344 14 C 0.086 3.914 15 C 0.070 3.930 16 C -0.130 4.130 17 C -0.129 4.129 18 C -0.511 4.511 19 H 0.057 0.943 20 C 0.068 3.932 21 N -0.882 5.882 22 Si 0.894 3.106 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 N -0.658 5.658 27 C 0.494 3.506 28 O -0.508 6.508 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.155 0.845 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.017 0.983 38 H 0.084 0.916 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.084 0.916 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.072 -2.078 -20.781 20.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.015 3.985 3 H 0.124 0.876 4 O -0.182 6.182 5 C 0.091 3.909 6 C -0.024 4.024 7 C -0.113 4.113 8 C -0.144 4.144 9 C -0.068 4.068 10 C -0.111 4.111 11 C 0.340 3.660 12 O -0.382 6.382 13 O -0.261 6.261 14 C 0.014 3.986 15 C 0.070 3.930 16 C -0.187 4.187 17 C -0.187 4.187 18 C -0.549 4.549 19 H 0.076 0.924 20 C -0.133 4.133 21 N -0.521 5.521 22 Si 0.722 3.278 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 N -0.306 5.306 27 C 0.280 3.720 28 O -0.382 6.382 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.155 0.845 33 H 0.160 0.840 34 H 0.173 0.827 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.036 0.964 38 H 0.103 0.897 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.102 0.898 42 H 0.036 0.964 43 H 0.070 0.930 44 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 0.195 -1.921 -20.897 20.986 hybrid contribution -0.255 0.060 0.339 0.428 sum -0.060 -1.860 -20.559 20.643 Atomic orbital electron populations 1.21704 0.88592 1.04516 1.04286 1.22744 0.98632 0.96426 0.80744 0.87600 1.86495 1.20116 1.72802 1.38786 1.18517 0.83691 0.97368 0.91361 1.17821 0.92869 1.06756 0.84947 1.20836 0.90694 1.00005 0.99798 1.20985 1.00810 1.01476 0.91122 1.21555 0.92048 0.93350 0.99814 1.18739 0.93763 1.08687 0.89938 1.20658 0.85126 0.75518 0.84679 1.90852 1.16337 1.43706 1.87338 1.86555 1.44146 1.79224 1.16130 1.23698 0.95847 0.99017 0.80059 1.18251 0.92002 0.93937 0.88806 1.21774 1.00119 0.96440 1.00394 1.21769 0.99747 0.97171 1.00013 1.20987 0.96458 1.46540 0.90949 0.92426 1.24851 0.94887 0.94834 0.98763 1.69832 1.08831 1.48190 1.25207 0.86495 0.80077 0.78112 0.83081 1.19753 1.20980 1.20976 1.43684 1.20072 1.54538 1.12326 1.21649 0.80415 0.78885 0.91007 1.90783 1.55108 1.58920 1.33362 0.89607 0.89109 0.91042 0.84459 0.84033 0.82745 0.92460 0.92438 0.96436 0.89749 0.95812 0.95825 0.89751 0.96446 0.92972 0.74430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 9.14 37.16 0.34 -0.96 16 2 C 0.07 0.82 3.68 -27.86 -0.10 0.72 16 3 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 4 O -0.27 -3.84 8.20 -40.42 -0.33 -4.17 16 5 C 0.14 1.84 6.45 -38.55 -0.25 1.59 16 6 C 0.07 0.72 6.54 -83.51 -0.55 0.17 16 7 C -0.09 -0.70 9.94 -39.39 -0.39 -1.09 16 8 C -0.13 -1.00 10.02 -39.62 -0.40 -1.40 16 9 C -0.05 -0.54 9.61 -39.12 -0.38 -0.92 16 10 C -0.11 -1.55 5.88 -104.93 -0.62 -2.16 16 11 C 0.50 9.00 7.89 34.46 0.27 9.27 16 12 O -0.49 -10.09 14.99 -26.54 -0.40 -10.49 16 13 O -0.34 -6.68 8.13 -40.63 -0.33 -7.01 16 14 C 0.09 1.88 4.27 37.16 0.16 2.04 16 15 C 0.07 1.68 0.58 -155.66 -0.09 1.59 16 16 C -0.13 -3.04 8.11 37.16 0.30 -2.73 16 17 C -0.13 -3.02 8.11 37.16 0.30 -2.72 16 18 C -0.51 -13.48 8.01 -34.44 -0.28 -13.75 16 19 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 20 C 0.07 1.80 5.15 -17.82 -0.09 1.71 16 21 N -0.88 -23.58 9.35 55.43 0.52 -23.06 16 22 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 26 N -0.66 -6.08 5.48 -9.68 -0.05 -6.14 16 27 C 0.49 5.54 7.65 -10.82 -0.08 5.46 16 28 O -0.51 -6.73 17.01 5.54 0.09 -6.63 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.77 7.85 -51.93 -0.41 0.36 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 33 H 0.14 0.74 8.06 -52.48 -0.42 0.31 16 34 H 0.15 1.69 7.61 -52.49 -0.40 1.30 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 38 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 42 H 0.02 0.35 7.68 -51.93 -0.40 -0.04 16 43 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 44 H 0.42 2.79 8.89 -40.82 -0.36 2.43 16 LS Contribution 366.06 15.07 5.52 5.52 Total: -1.00 -31.13 366.06 -7.80 -38.92 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -5.94 Total: 0.64 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -1.85 Total: -3.19 kcal Atomic # 7 Polarization: -29.66 SS G_CDS: 0.47 Total: -29.20 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.97 Total: -28.29 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.13 -7.80 -38.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184810834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.162 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds