Wall clock time and date at job start Tue Mar 31 2020 18:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.44087 * 2 1 4 4 O 1.42999 * 109.44509 * 119.93281 * 2 1 3 5 5 C 1.35673 * 116.74139 * 166.38688 * 4 2 1 6 6 C 1.39414 * 119.55551 * 327.23208 * 5 4 2 7 7 C 1.38395 * 120.07439 * 179.91299 * 6 5 4 8 8 C 1.38596 * 120.16907 * 0.06331 * 7 6 5 9 9 C 1.37759 * 120.42810 * 359.67819 * 8 7 6 10 10 C 1.39838 * 120.71784 * 147.18765 * 5 4 2 11 11 C 1.47403 * 120.24485 * 0.03627 * 10 5 4 12 12 O 1.21507 * 119.99706 * 0.02562 * 11 10 5 13 13 O 1.34751 * 119.99937 * 180.02562 * 11 10 5 14 14 C 1.45206 * 116.99792 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47129 * 180.02562 * 14 13 11 16 16 C 1.53008 * 109.46800 * 299.99943 * 15 14 13 17 17 C 1.53001 * 109.46963 * 59.99628 * 15 14 13 18 18 C 1.50696 * 109.46919 * 179.97438 * 15 14 13 19 19 H 1.07999 * 120.00202 * 0.02562 * 18 15 14 20 20 C 1.37884 * 119.99746 * 179.97438 * 18 15 14 21 21 N 1.31514 * 119.99981 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 119.99781 * 180.02562 * 20 18 15 23 23 H 1.48501 * 109.47364 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46870 * 120.00150 * 22 20 18 25 25 H 1.48508 * 109.46883 * 239.99960 * 22 20 18 26 26 N 1.40251 * 119.22109 * 359.89231 * 6 5 4 27 27 C 1.35087 * 118.95860 * 15.44605 * 26 6 5 28 28 O 1.21296 * 120.13993 * 181.68426 * 27 26 6 29 29 H 1.09002 * 109.46732 * 300.06461 * 1 2 3 30 30 H 1.08994 * 109.47476 * 60.06384 * 1 2 3 31 31 H 1.08999 * 109.46843 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.91807 * 180.02562 * 7 6 5 33 33 H 1.08004 * 119.79136 * 179.97438 * 8 7 6 34 34 H 1.07993 * 119.96090 * 180.29150 * 9 8 7 35 35 H 1.09004 * 109.47122 * 299.99965 * 14 13 11 36 36 H 1.09000 * 109.47070 * 59.99991 * 14 13 11 37 37 H 1.09002 * 109.47021 * 59.99682 * 16 15 14 38 38 H 1.09001 * 109.46630 * 179.97438 * 16 15 14 39 39 H 1.09000 * 109.47188 * 300.00076 * 16 15 14 40 40 H 1.08996 * 109.46778 * 60.00354 * 17 15 14 41 41 H 1.09001 * 109.46652 * 180.02562 * 17 15 14 42 42 H 1.08992 * 109.47514 * 300.00067 * 17 15 14 43 43 H 0.96991 * 120.00238 * 179.97438 * 21 20 18 44 44 H 0.97010 * 120.52172 * 195.47619 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8928 1.0279 0.0000 4 8 2.0061 -0.6728 1.1686 5 6 3.3197 -1.0116 1.1854 6 6 3.9572 -1.3528 -0.0065 7 6 5.2974 -1.6984 -0.0020 8 6 6.0102 -1.7079 1.1865 9 6 5.3954 -1.3680 2.3715 10 6 4.0397 -1.0210 2.3842 11 6 3.3771 -0.6621 3.6510 12 8 2.2009 -0.3569 3.6562 13 8 4.0757 -0.6723 4.8032 14 6 3.3584 -0.3083 6.0122 15 6 4.3090 -0.3764 7.2092 16 6 4.8533 -1.7997 7.3479 17 6 5.4711 0.5952 6.9934 18 6 3.5648 0.0019 8.4637 19 1 2.5184 0.2642 8.4126 20 6 4.2196 0.0122 9.6771 21 7 5.4937 -0.3077 9.7395 22 14 3.2969 0.4805 11.2324 23 1 1.8853 0.7945 10.8949 24 1 3.3358 -0.6529 12.1911 25 1 3.9361 1.6714 11.8476 26 7 3.2247 -1.3412 -1.2025 27 6 2.0312 -0.7092 -1.2323 28 8 1.3658 -0.7119 -2.2465 29 1 -0.3633 0.5149 0.8894 30 1 -0.3634 0.5128 -0.8905 31 1 -0.3633 -1.0277 0.0005 32 1 5.7888 -1.9619 -0.9269 33 1 7.0557 -1.9790 1.1831 34 1 5.9592 -1.3735 3.2926 35 1 2.9711 0.7058 5.9135 36 1 2.5303 -1.0003 6.1656 37 1 5.3916 -2.0728 6.4403 38 1 5.5308 -1.8480 8.2004 39 1 4.0254 -2.4919 7.5015 40 1 5.0833 1.6091 6.8946 41 1 6.1485 0.5464 7.8460 42 1 6.0094 0.3220 6.0860 43 1 5.9544 -0.3002 10.5930 44 1 3.5695 -1.7804 -1.9958 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184810834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:55 Heat of formation + Delta-G solvation = -146.804918 kcal Electronic energy + Delta-G solvation = -28828.649710 eV Core-core repulsion = 24710.848764 eV Total energy + Delta-G solvation = -4117.800946 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.76952 -41.31545 -39.95561 -38.74375 -38.18374 -36.53076 -36.31536 -33.29502 -33.22481 -31.80504 -30.12330 -27.71549 -27.52958 -27.17348 -26.15567 -25.07611 -24.41261 -22.26758 -20.88128 -20.62835 -20.21312 -19.25582 -18.39979 -18.09160 -17.76981 -17.30629 -17.25571 -17.07253 -16.59478 -16.04575 -15.95988 -15.62974 -15.53981 -14.95740 -14.72765 -14.63006 -14.22632 -13.98644 -13.71768 -13.40117 -13.29519 -13.25672 -13.20681 -12.98997 -12.81810 -12.65375 -12.58872 -12.32673 -12.30096 -12.12346 -11.97992 -11.68623 -11.60465 -11.24581 -11.23980 -11.09661 -10.70334 -10.38565 -9.91189 -9.13069 -8.03397 -6.20842 -0.46609 -0.08135 1.04771 1.42700 1.45151 1.48780 1.55453 1.56804 1.79098 2.03748 2.46335 2.61647 2.77718 3.20135 3.43596 3.60889 3.73222 3.80212 3.93681 4.16655 4.25438 4.29581 4.30475 4.42351 4.63799 4.65178 4.68179 4.80893 4.90025 5.01238 5.07271 5.08553 5.23541 5.27413 5.29267 5.33580 5.40544 5.57052 5.59308 5.61554 5.67769 5.67884 6.09048 6.12078 6.21013 6.39932 6.61520 6.77947 6.85787 7.46989 8.96342 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021719 B = 0.002741 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.857211 B =10212.020720 C =11281.894933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.066 3.934 3 H 0.119 0.881 4 O -0.298 6.298 5 C 0.119 3.881 6 C 0.068 3.932 7 C -0.064 4.064 8 C -0.109 4.109 9 C -0.051 4.051 10 C -0.139 4.139 11 C 0.494 3.506 12 O -0.528 6.528 13 O -0.343 6.343 14 C 0.099 3.901 15 C 0.063 3.937 16 C -0.119 4.119 17 C -0.118 4.118 18 C -0.535 4.535 19 H 0.047 0.953 20 C 0.030 3.970 21 N -0.898 5.898 22 Si 0.950 3.050 23 H -0.274 1.274 24 H -0.280 1.280 25 H -0.279 1.279 26 N -0.645 5.645 27 C 0.496 3.504 28 O -0.531 6.531 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.184 0.816 33 H 0.182 0.818 34 H 0.153 0.847 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.037 0.963 38 H 0.064 0.936 39 H 0.017 0.983 40 H 0.018 0.982 41 H 0.064 0.936 42 H 0.037 0.963 43 H 0.262 0.738 44 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.997 -2.732 -22.820 23.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.007 3.993 3 H 0.136 0.864 4 O -0.212 6.212 5 C 0.071 3.929 6 C -0.027 4.027 7 C -0.084 4.084 8 C -0.127 4.127 9 C -0.070 4.070 10 C -0.142 4.142 11 C 0.339 3.661 12 O -0.419 6.419 13 O -0.260 6.260 14 C 0.026 3.974 15 C 0.063 3.937 16 C -0.177 4.177 17 C -0.176 4.176 18 C -0.573 4.573 19 H 0.065 0.935 20 C -0.170 4.170 21 N -0.536 5.536 22 Si 0.776 3.224 23 H -0.199 1.199 24 H -0.206 1.206 25 H -0.205 1.205 26 N -0.294 5.294 27 C 0.283 3.717 28 O -0.407 6.407 29 H 0.102 0.898 30 H 0.123 0.877 31 H 0.082 0.918 32 H 0.201 0.799 33 H 0.200 0.800 34 H 0.171 0.829 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.036 0.964 40 H 0.037 0.963 41 H 0.082 0.918 42 H 0.056 0.944 43 H 0.072 0.928 44 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 2.153 -2.590 -22.951 23.196 hybrid contribution -0.784 0.228 0.876 1.197 sum 1.369 -2.362 -22.074 22.243 Atomic orbital electron populations 1.21705 0.88082 1.04153 1.04823 1.22937 0.99202 0.96920 0.80223 0.86404 1.86454 1.21123 1.73358 1.40252 1.18741 0.83554 0.98308 0.92272 1.17912 0.93816 1.07023 0.83986 1.21381 0.89165 0.96385 1.01497 1.21416 1.02412 0.99207 0.89667 1.21684 0.90623 0.93262 1.01399 1.18618 0.95235 1.12213 0.88104 1.21441 0.84983 0.74394 0.85235 1.90824 1.17839 1.45512 1.87689 1.86533 1.43888 1.79515 1.16033 1.23259 0.95086 0.98202 0.80869 1.18257 0.92339 0.94258 0.88867 1.21627 0.99526 0.96073 1.00429 1.21618 0.99169 0.96803 1.00010 1.21244 0.96319 1.47197 0.92500 0.93500 1.25466 0.95652 0.94800 1.01100 1.69930 1.09576 1.48272 1.25825 0.85632 0.78860 0.77913 0.79957 1.19916 1.20552 1.20483 1.43522 1.19343 1.53888 1.12623 1.21568 0.80818 0.78851 0.90452 1.90773 1.55906 1.60039 1.34022 0.89819 0.87726 0.91834 0.79898 0.80027 0.82900 0.93410 0.93575 0.94428 0.91728 0.96401 0.96307 0.91756 0.94410 0.92815 0.72676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.14 71.98 0.66 -1.95 16 2 C 0.07 1.47 3.68 29.87 0.11 1.58 16 3 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 4 O -0.30 -8.68 8.20 -69.15 -0.57 -9.25 16 5 C 0.12 3.06 6.45 22.94 0.15 3.21 16 6 C 0.07 1.17 6.54 38.11 0.25 1.42 16 7 C -0.06 -0.64 9.94 22.39 0.22 -0.42 16 8 C -0.11 -1.22 10.02 22.24 0.22 -1.00 16 9 C -0.05 -1.01 9.61 22.57 0.22 -0.79 16 10 C -0.14 -3.90 5.88 -20.06 -0.12 -4.01 16 11 C 0.49 18.36 7.89 70.24 0.55 18.91 16 12 O -0.53 -22.63 14.99 26.76 0.40 -22.23 16 13 O -0.34 -13.51 8.13 -56.62 -0.46 -13.97 16 14 C 0.10 4.46 4.27 71.98 0.31 4.77 16 15 C 0.06 3.06 0.58 -52.93 -0.03 3.03 16 16 C -0.12 -5.59 8.11 71.98 0.58 -5.01 16 17 C -0.12 -5.54 8.11 71.98 0.58 -4.96 16 18 C -0.53 -28.73 8.01 25.60 0.21 -28.52 16 19 H 0.05 2.55 7.74 -2.91 -0.02 2.53 16 20 C 0.03 1.59 5.15 84.66 0.44 2.02 16 21 N -0.90 -48.24 9.35 21.45 0.20 -48.04 16 22 Si 0.95 42.55 29.54 68.60 2.03 44.57 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 25 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 26 N -0.65 -10.27 5.48 -302.74 -1.66 -11.93 16 27 C 0.50 10.59 7.65 87.62 0.67 11.26 16 28 O -0.53 -13.56 17.01 -3.08 -0.05 -13.61 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.10 1.75 7.85 -2.39 -0.02 1.73 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.18 0.26 8.06 -2.91 -0.02 0.23 16 33 H 0.18 0.69 8.06 -2.91 -0.02 0.66 16 34 H 0.15 3.05 7.61 -2.91 -0.02 3.03 16 35 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.04 1.56 7.68 -2.39 -0.02 1.54 16 38 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 39 H 0.02 0.80 8.14 -2.39 -0.02 0.79 16 40 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 3.28 6.07 -2.39 -0.01 3.26 16 42 H 0.04 1.56 7.68 -2.39 -0.02 1.54 16 43 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 44 H 0.43 4.29 8.89 -92.70 -0.82 3.46 16 Total: -1.00 -69.63 366.06 5.12 -64.51 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.21 Total: 10.38 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 5.02 Total: -0.45 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -1.46 Total: -59.97 kcal Atomic # 8 Polarization: -58.37 SS G_CDS: -0.68 Total: -59.05 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -69.63 5.12 -64.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184810834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.297 kcal (2) G-P(sol) polarization free energy of solvation -69.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds