Wall clock time and date at job start Tue Mar 31 2020 17:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34226 * 116.99678 * 2 1 4 4 O 1.20835 * 120.00179 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99989 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.44749 * 299.96144 * 5 3 2 7 7 C 1.53037 * 109.46052 * 59.92803 * 5 3 2 8 8 C 1.52761 * 109.38420 * 181.26258 * 7 5 3 9 9 N 1.46930 * 109.00812 * 305.58939 * 8 7 5 10 10 S 1.65601 * 120.63016 * 233.58254 * 9 8 7 11 11 O 1.42099 * 104.27614 * 153.64883 * 10 9 8 12 12 O 1.42098 * 104.27658 * 25.79254 * 10 9 8 13 13 C 1.81402 * 104.45063 * 269.71855 * 10 9 8 14 14 C 1.52992 * 109.47209 * 179.97438 * 13 10 9 15 15 C 1.53004 * 109.47319 * 180.02562 * 14 13 10 16 16 C 1.50700 * 109.47208 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99770 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00083 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00147 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00278 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47228 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46793 * 300.00001 * 20 18 16 23 23 H 1.48500 * 109.47000 * 60.00094 * 20 18 16 24 24 C 1.46922 * 118.73772 * 53.30834 * 9 8 7 25 25 C 1.53039 * 109.46430 * 179.97438 * 5 3 2 26 26 H 1.09005 * 109.49821 * 58.66049 * 25 5 3 27 27 C 1.53004 * 109.52291 * 298.58261 * 25 5 3 28 28 H 1.09001 * 109.46413 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47438 * 300.00210 * 1 2 3 30 30 H 1.08998 * 109.46728 * 60.00798 * 1 2 3 31 31 H 1.08997 * 109.49629 * 301.33720 * 7 5 3 32 32 H 1.09000 * 109.49964 * 61.40709 * 7 5 3 33 33 H 1.09003 * 109.51051 * 185.70773 * 8 7 5 34 34 H 1.08999 * 109.43624 * 65.42188 * 8 7 5 35 35 H 1.09009 * 109.46681 * 59.99982 * 13 10 9 36 36 H 1.08998 * 109.47443 * 300.00153 * 13 10 9 37 37 H 1.09000 * 109.47364 * 60.00146 * 14 13 10 38 38 H 1.08998 * 109.47610 * 300.00208 * 14 13 10 39 39 H 1.08994 * 109.47074 * 60.00408 * 15 14 13 40 40 H 1.08998 * 109.47285 * 300.00244 * 15 14 13 41 41 H 0.97005 * 119.99661 * 359.97438 * 19 18 16 42 42 H 1.09001 * 109.58951 * 66.43224 * 24 9 8 43 43 H 1.09005 * 109.58700 * 186.85249 * 24 9 8 44 44 H 1.09000 * 109.46866 * 300.14555 * 27 25 5 45 45 H 1.08998 * 109.47097 * 60.14317 * 27 25 5 46 46 H 1.08996 * 109.47381 * 180.14380 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9552 0.7815 0.8913 7 6 4.1138 0.5794 -1.2478 8 6 5.6404 0.6329 -1.2296 9 7 6.0685 2.0305 -1.0804 10 16 7.1329 2.7061 -2.1541 11 8 6.8388 4.0957 -2.1118 12 8 6.9519 1.9549 -3.3467 13 6 8.7672 2.3793 -1.4378 14 6 9.8492 2.9615 -2.3493 15 6 11.2277 2.6854 -1.7454 16 6 12.2935 3.2594 -2.6430 17 1 12.0154 3.7705 -3.5529 18 6 13.6234 3.1322 -2.3026 19 7 13.9620 2.5094 -1.1949 20 14 14.9445 3.8444 -3.4148 21 1 16.2824 3.5762 -2.8288 22 1 14.8555 3.2132 -4.7560 23 1 14.7459 5.3104 -3.5434 24 6 5.5295 2.8190 0.0360 25 6 3.9999 2.7426 -0.0002 26 1 3.5902 3.2435 0.8769 27 6 3.4837 3.4276 -1.2672 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 3.7852 -0.4598 -1.2588 32 1 3.7446 1.0873 -2.1387 33 1 6.0300 0.2292 -2.1642 34 1 6.0140 0.0449 -0.3913 35 1 8.9134 1.3033 -1.3422 36 1 8.8320 2.8436 -0.4538 37 1 9.7032 4.0374 -2.4453 38 1 9.7843 2.4969 -3.3331 39 1 11.3735 1.6095 -1.6499 40 1 11.2930 3.1497 -0.7615 41 1 13.2760 2.1399 -0.6171 42 1 5.8938 2.4129 0.9797 43 1 5.8460 3.8574 -0.0637 44 1 3.8928 2.9257 -2.1440 45 1 2.3954 3.3730 -1.2920 46 1 3.7952 4.4722 -1.2681 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188599880.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:51 Heat of formation + Delta-G solvation = -200.990513 kcal Electronic energy + Delta-G solvation = -27603.673829 eV Core-core repulsion = 23618.967171 eV Total energy + Delta-G solvation = -3984.706658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.91356 -39.70063 -38.30711 -37.51885 -37.08471 -36.77188 -34.27664 -34.22976 -32.90403 -29.35684 -29.17929 -27.89577 -26.30338 -25.40838 -24.04226 -22.77028 -22.40139 -20.64079 -19.58040 -19.14476 -18.84115 -18.52253 -17.61929 -17.31168 -17.22345 -17.17859 -16.19651 -15.93869 -15.67314 -15.49976 -15.37258 -15.28526 -14.81547 -14.73810 -14.14875 -13.92968 -13.89598 -13.64988 -13.53931 -13.26438 -13.20289 -13.13496 -13.02296 -12.88991 -12.60807 -12.57670 -12.47730 -12.39502 -12.14931 -11.94899 -11.87868 -11.77632 -11.62645 -11.53386 -11.39888 -11.17257 -10.70442 -10.56449 -9.94746 -8.71404 -6.42451 -0.82932 1.14899 1.52693 1.60458 1.62546 1.76469 1.80208 2.54945 2.77246 3.09048 3.13117 3.41467 3.54733 3.67762 3.75758 3.81370 3.97228 4.04147 4.16584 4.24756 4.29216 4.30800 4.32642 4.49368 4.52683 4.61611 4.68694 4.72602 4.72832 4.80393 4.82788 4.86845 4.87556 4.93882 5.08549 5.10732 5.24176 5.26290 5.33509 5.36798 5.49187 5.64530 5.95063 6.15566 6.55353 6.72745 7.38223 8.70131 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.035621 B = 0.002293 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.875318 B =12207.321732 C =12370.306239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.465 3.535 4 O -0.531 6.531 5 C -0.070 4.070 6 H 0.146 0.854 7 C -0.123 4.123 8 C 0.112 3.888 9 N -0.996 5.996 10 S 2.619 3.381 11 O -0.985 6.985 12 O -0.986 6.986 13 C -0.610 4.610 14 C -0.101 4.101 15 C 0.015 3.985 16 C -0.630 4.630 17 H 0.050 0.950 18 C -0.037 4.037 19 N -0.934 5.934 20 Si 1.115 2.885 21 H -0.281 1.281 22 H -0.269 1.269 23 H -0.270 1.270 24 C 0.117 3.883 25 C -0.083 4.083 26 H 0.100 0.900 27 C -0.160 4.160 28 H 0.130 0.870 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.111 0.889 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.002 0.998 40 H 0.001 0.999 41 H 0.258 0.742 42 H 0.111 0.889 43 H 0.091 0.909 44 H 0.041 0.959 45 H 0.065 0.935 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.587 -7.787 6.556 28.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.310 3.690 4 O -0.421 6.421 5 C -0.088 4.088 6 H 0.163 0.837 7 C -0.162 4.162 8 C -0.012 4.012 9 N -0.835 5.835 10 S 2.716 3.284 11 O -0.975 6.975 12 O -0.977 6.977 13 C -0.740 4.740 14 C -0.140 4.140 15 C -0.023 4.023 16 C -0.668 4.668 17 H 0.068 0.932 18 C -0.235 4.235 19 N -0.572 5.572 20 Si 0.936 3.064 21 H -0.206 1.206 22 H -0.194 1.194 23 H -0.195 1.195 24 C -0.008 4.008 25 C -0.103 4.103 26 H 0.118 0.882 27 C -0.217 4.217 28 H 0.148 0.852 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.129 0.871 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.129 0.871 35 H 0.166 0.834 36 H 0.165 0.835 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.020 0.980 40 H 0.019 0.981 41 H 0.067 0.933 42 H 0.129 0.871 43 H 0.109 0.891 44 H 0.060 0.940 45 H 0.084 0.916 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -25.460 -6.879 5.583 26.958 hybrid contribution -1.557 -0.153 0.557 1.661 sum -27.018 -7.032 6.140 28.585 Atomic orbital electron populations 1.23506 0.75176 1.05557 1.02274 1.86505 1.24621 1.32910 1.83621 1.24163 0.92659 0.81100 0.71122 1.90630 1.67966 1.37152 1.46325 1.21160 0.85785 0.98518 1.03383 0.83671 1.21845 0.95780 1.02597 0.96015 1.21652 0.94421 0.80269 1.04865 1.57571 1.58990 1.22184 1.44777 1.04542 0.76403 0.73281 0.74186 1.93525 1.83557 1.33617 1.86786 1.93517 1.85583 1.73012 1.45558 1.30577 1.18796 1.12413 1.12209 1.21183 0.94708 1.00265 0.97839 1.19125 0.92180 0.95451 0.95517 1.22564 0.94272 1.40182 1.09760 0.93179 1.27409 1.01838 0.95261 0.98965 1.70924 1.37112 1.36105 1.13017 0.82960 0.73065 0.76451 0.73916 1.20619 1.19432 1.19506 1.21775 0.92500 0.96657 0.89841 1.21296 0.95372 0.93736 0.99900 0.88182 1.22053 1.01898 1.00359 0.97425 0.85213 0.91939 0.92502 0.87055 0.92391 0.88851 0.87098 0.83424 0.83539 0.91885 0.91826 0.98015 0.98096 0.93260 0.87094 0.89108 0.93965 0.91612 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.36 -5.12 10.44 -51.38 -0.54 -5.66 16 3 C 0.47 7.83 6.97 71.23 0.50 8.32 16 4 O -0.53 -12.08 13.50 21.94 0.30 -11.79 16 5 C -0.07 -0.88 2.37 -11.52 -0.03 -0.90 16 6 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 7 C -0.12 -1.60 4.94 30.53 0.15 -1.45 16 8 C 0.11 1.53 6.40 86.22 0.55 2.08 16 9 N -1.00 -18.55 2.67 -513.84 -1.37 -19.92 16 10 S 2.62 72.87 5.45 -56.49 -0.31 72.56 16 11 O -0.98 -33.25 16.59 -127.65 -2.12 -35.36 16 12 O -0.99 -32.98 16.58 -127.65 -2.12 -35.10 16 13 C -0.61 -17.41 6.18 71.98 0.44 -16.96 16 14 C -0.10 -4.09 5.16 30.59 0.16 -3.93 16 15 C 0.02 0.79 4.28 29.85 0.13 0.91 16 16 C -0.63 -36.22 9.11 25.60 0.23 -35.99 16 17 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 18 C -0.04 -2.14 5.46 84.65 0.46 -1.68 16 19 N -0.93 -57.25 13.65 21.45 0.29 -56.96 16 20 Si 1.12 50.30 29.90 68.60 2.05 52.35 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 24 C 0.12 1.78 5.83 86.36 0.50 2.29 16 25 C -0.08 -1.33 2.35 -10.72 -0.03 -1.35 16 26 H 0.10 1.45 8.07 -2.38 -0.02 1.43 16 27 C -0.16 -3.57 8.40 71.98 0.60 -2.96 16 28 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 30 H 0.06 0.64 8.13 -2.39 -0.02 0.62 16 31 H 0.11 0.98 8.08 -2.39 -0.02 0.96 16 32 H 0.06 1.02 6.33 -2.39 -0.02 1.00 16 33 H 0.09 1.48 6.85 -2.39 -0.02 1.47 16 34 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.15 3.57 8.14 -2.39 -0.02 3.55 16 36 H 0.15 3.59 8.14 -2.39 -0.02 3.57 16 37 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.00 0.08 8.01 -2.39 -0.02 0.06 16 40 H 0.00 0.04 8.01 -2.39 -0.02 0.02 16 41 H 0.26 15.76 7.22 -92.70 -0.67 15.09 16 42 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.09 1.64 6.86 -2.38 -0.02 1.63 16 44 H 0.04 1.02 5.97 -2.39 -0.01 1.00 16 45 H 0.07 1.57 5.65 -2.39 -0.01 1.56 16 46 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -80.52 376.47 2.13 -78.39 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 1.06 Total: 11.64 kcal Atomic # 6 Polarization: -55.03 SS G_CDS: 4.88 Total: -50.15 kcal Atomic # 7 Polarization: -75.80 SS G_CDS: -1.08 Total: -76.88 kcal Atomic # 8 Polarization: -83.43 SS G_CDS: -4.47 Total: -87.91 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 2.05 Total: 52.35 kcal Atomic # 16 Polarization: 72.87 SS G_CDS: -0.31 Total: 72.56 kcal Total: -80.52 2.13 -78.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188599880.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.603 kcal (2) G-P(sol) polarization free energy of solvation -80.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds