Wall clock time and date at job start Tue Mar 31 2020 17:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34220 * 117.00475 * 2 1 4 4 O 1.20832 * 119.99590 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00618 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.45756 * 300.03035 * 5 3 2 7 7 C 1.53034 * 109.45870 * 59.99758 * 5 3 2 8 8 C 1.53188 * 109.31404 * 181.39010 * 7 5 3 9 9 N 1.46933 * 108.77495 * 305.36890 * 8 7 5 10 10 S 1.65601 * 120.62562 * 233.58468 * 9 8 7 11 11 O 1.42102 * 104.28043 * 26.09280 * 10 9 8 12 12 O 1.42104 * 104.27346 * 153.94866 * 10 9 8 13 13 C 1.81394 * 104.45240 * 270.01620 * 10 9 8 14 14 C 1.52998 * 109.47333 * 180.02562 * 13 10 9 15 15 C 1.52999 * 109.47018 * 180.02562 * 14 13 10 16 16 C 1.50709 * 109.47117 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99592 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99896 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99815 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00181 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47120 * 90.00028 * 20 18 16 22 22 H 1.48502 * 109.47141 * 210.00118 * 20 18 16 23 23 H 1.48495 * 109.47286 * 330.00083 * 20 18 16 24 24 C 1.46919 * 118.74003 * 53.60503 * 9 8 7 25 25 C 1.53195 * 108.89273 * 306.32349 * 24 9 8 26 26 H 1.09002 * 109.49585 * 294.75599 * 25 24 9 27 27 C 1.53001 * 109.49760 * 174.65835 * 25 24 9 28 28 H 1.09000 * 109.47184 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46774 * 299.99746 * 1 2 3 30 30 H 1.08995 * 109.47260 * 59.99914 * 1 2 3 31 31 H 1.08994 * 109.50232 * 61.43820 * 7 5 3 32 32 H 1.09000 * 109.49784 * 301.33885 * 7 5 3 33 33 H 1.08994 * 109.59289 * 185.57924 * 8 7 5 34 34 H 1.09002 * 109.58818 * 65.14921 * 8 7 5 35 35 H 1.09001 * 109.47223 * 300.00692 * 13 10 9 36 36 H 1.09010 * 109.47051 * 60.00391 * 13 10 9 37 37 H 1.08995 * 109.47139 * 299.99928 * 14 13 10 38 38 H 1.08994 * 109.47209 * 60.00230 * 14 13 10 39 39 H 1.08996 * 109.47545 * 299.99962 * 15 14 13 40 40 H 1.08997 * 109.47510 * 60.00315 * 15 14 13 41 41 H 0.97001 * 119.99865 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.58751 * 66.18300 * 24 9 8 43 43 H 1.08996 * 109.58750 * 186.46484 * 24 9 8 44 44 H 1.09005 * 109.46904 * 59.99770 * 27 25 24 45 45 H 1.08994 * 109.46936 * 180.02562 * 27 25 24 46 46 H 1.08994 * 109.47295 * 300.00137 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9562 0.7800 0.8889 7 6 4.1127 0.5812 -1.2505 8 6 5.6436 0.6329 -1.2304 9 7 6.0676 2.0319 -1.0824 10 16 7.1321 2.7088 -2.1554 11 8 6.9500 1.9600 -3.3493 12 8 6.8388 4.0985 -2.1103 13 6 8.7663 2.3796 -1.4404 14 6 9.8484 2.9640 -2.3508 15 6 11.2268 2.6858 -1.7480 16 6 12.2926 3.2619 -2.6443 17 1 12.0145 3.7747 -3.5532 18 6 13.6226 3.1342 -2.3041 19 7 14.5527 3.6374 -3.0860 20 14 14.1035 2.2477 -0.7317 21 1 14.2942 0.8029 -1.0166 22 1 15.3696 2.8204 -0.2080 23 1 13.0289 2.4152 0.2794 24 6 5.5297 2.8187 0.0357 25 6 3.9998 2.7457 0.0028 26 1 3.6316 3.2351 -0.8989 27 6 3.4284 3.4486 1.2358 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.7433 1.0908 -2.1403 32 1 3.7840 -0.4580 -1.2630 33 1 6.0353 0.2292 -2.1640 34 1 6.0180 0.0470 -0.3909 35 1 8.8319 2.8420 -0.4555 36 1 8.9120 1.3034 -1.3470 37 1 9.7830 2.5019 -3.3357 38 1 9.7026 4.0401 -2.4438 39 1 11.2926 3.1475 -0.7629 40 1 11.3724 1.6095 -1.6553 41 1 15.4884 3.5472 -2.8468 42 1 5.8948 2.4110 0.9784 43 1 5.8481 3.8565 -0.0612 44 1 3.7423 4.4924 1.2370 45 1 2.3400 3.3960 1.2122 46 1 3.7960 2.9577 2.1369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188599904.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:55 Heat of formation + Delta-G solvation = -171.374090 kcal Electronic energy + Delta-G solvation = -27404.278473 eV Core-core repulsion = 23420.856080 eV Total energy + Delta-G solvation = -3983.422394 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.19925 -38.84438 -37.07765 -36.85800 -35.83382 -34.82683 -33.70763 -32.53099 -32.22627 -28.57533 -28.37986 -27.10942 -25.60132 -23.57977 -22.62171 -21.97563 -20.50705 -20.31396 -18.83675 -18.10970 -17.66135 -17.05326 -16.91368 -16.68563 -16.27088 -15.98470 -15.22912 -14.72452 -14.52695 -14.41362 -14.29420 -14.15018 -14.06955 -13.55382 -12.93656 -12.88429 -12.73839 -12.51844 -12.42209 -12.36704 -12.21434 -12.15260 -11.94292 -11.83090 -11.64498 -11.58547 -11.35574 -11.16235 -11.08073 -10.99814 -10.96311 -10.84899 -10.42101 -10.11458 -9.89655 -9.75625 -9.30131 -9.10931 -8.60075 -6.09595 -4.08991 0.30907 1.80857 2.29640 2.61714 3.25346 3.33020 3.34893 3.90718 4.03646 4.14222 4.28661 4.34420 4.39022 4.57205 4.64722 4.68663 4.76482 4.78211 4.94764 5.02329 5.03801 5.09325 5.17025 5.19896 5.23940 5.29373 5.34492 5.42431 5.44060 5.66541 5.70798 5.72338 5.77648 5.94340 5.98632 6.10375 6.19482 6.24387 6.36838 6.64875 7.10656 7.24713 7.37423 7.69605 8.46311 8.94791 9.51370 11.03659 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.027127 B = 0.002396 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.932452 B =11683.028713 C =11734.243740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.465 3.535 4 O -0.499 6.499 5 C -0.074 4.074 6 H 0.112 0.888 7 C -0.124 4.124 8 C 0.119 3.881 9 N -1.007 6.007 10 S 2.598 3.402 11 O -0.956 6.956 12 O -0.955 6.955 13 C -0.614 4.614 14 C -0.098 4.098 15 C -0.004 4.004 16 C -0.527 4.527 17 H 0.075 0.925 18 C 0.067 3.933 19 N -0.900 5.900 20 Si 0.881 3.119 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.266 1.266 24 C 0.122 3.878 25 C -0.086 4.086 26 H 0.086 0.914 27 C -0.162 4.162 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.020 0.980 40 H 0.016 0.984 41 H 0.264 0.736 42 H 0.072 0.928 43 H 0.102 0.898 44 H 0.062 0.938 45 H 0.082 0.918 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.209 -9.291 10.819 30.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.308 3.692 4 O -0.387 6.387 5 C -0.093 4.093 6 H 0.130 0.870 7 C -0.163 4.163 8 C -0.007 4.007 9 N -0.844 5.844 10 S 2.695 3.305 11 O -0.947 6.947 12 O -0.946 6.946 13 C -0.746 4.746 14 C -0.137 4.137 15 C -0.043 4.043 16 C -0.565 4.565 17 H 0.093 0.907 18 C -0.135 4.135 19 N -0.538 5.538 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.191 1.191 24 C -0.003 4.003 25 C -0.106 4.106 26 H 0.105 0.895 27 C -0.219 4.219 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.092 0.908 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.038 0.962 40 H 0.034 0.966 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.120 0.880 44 H 0.081 0.919 45 H 0.101 0.899 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -27.503 -8.526 9.993 30.479 hybrid contribution 0.553 -0.732 1.376 1.653 sum -26.950 -9.258 11.369 30.680 Atomic orbital electron populations 1.23271 0.76332 1.03732 1.02572 1.86511 1.23428 1.33585 1.84023 1.23846 0.92041 0.81254 0.72036 1.90616 1.67209 1.36060 1.44779 1.21210 0.86770 0.99268 1.02058 0.86999 1.21883 0.96188 1.01656 0.96547 1.21453 0.94101 0.81487 1.03619 1.57952 1.60497 1.21007 1.44904 1.05455 0.76531 0.74180 0.74322 1.93565 1.85141 1.72658 1.43293 1.93570 1.83196 1.31553 1.86246 1.30649 1.20164 1.11246 1.12523 1.21318 0.94767 1.00484 0.97180 1.19528 0.91254 0.96680 0.96811 1.21133 0.89951 1.36800 1.08645 0.90734 1.25034 0.96533 0.95159 0.96753 1.69913 1.00532 1.45669 1.37716 0.86765 0.78080 0.80116 0.84223 1.20226 1.21267 1.19063 1.21545 0.92683 0.97029 0.89068 1.21405 0.95302 0.92676 1.01267 0.89536 1.22070 1.03384 1.00616 0.95858 0.88070 0.91924 0.91848 0.90546 0.89151 0.87926 0.90796 0.85416 0.85406 0.91019 0.90989 0.96185 0.96613 0.92619 0.90945 0.87960 0.91871 0.89903 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.86 10.44 -39.23 -0.41 -3.27 16 3 C 0.47 4.22 6.97 36.01 0.25 4.47 16 4 O -0.50 -5.72 13.34 -18.76 -0.25 -5.97 16 5 C -0.07 -0.56 2.15 -91.57 -0.20 -0.76 16 6 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 7 C -0.12 -0.92 5.30 -26.62 -0.14 -1.06 16 8 C 0.12 0.94 6.43 -3.71 -0.02 0.92 16 9 N -1.01 -10.12 3.22 -113.52 -0.37 -10.49 16 10 S 2.60 35.87 5.45 -107.50 -0.59 35.29 16 11 O -0.96 -15.69 16.59 -57.54 -0.95 -16.65 16 12 O -0.96 -15.94 16.59 -57.54 -0.95 -16.90 16 13 C -0.61 -8.52 6.18 37.16 0.23 -8.29 16 14 C -0.10 -1.88 5.16 -26.73 -0.14 -2.02 16 15 C 0.00 -0.09 4.04 -27.88 -0.11 -0.21 16 16 C -0.53 -14.92 9.66 -34.44 -0.33 -15.25 16 17 H 0.07 2.26 7.99 -52.49 -0.42 1.85 16 18 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 19 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 20 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.07 6.54 56.52 0.37 -5.71 16 24 C 0.12 1.07 5.70 -3.71 -0.02 1.05 16 25 C -0.09 -0.76 2.07 -90.34 -0.19 -0.95 16 26 H 0.09 0.93 8.13 -51.93 -0.42 0.51 16 27 C -0.16 -1.31 8.87 37.16 0.33 -0.98 16 28 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 30 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.52 8.08 -51.93 -0.42 0.10 16 33 H 0.10 0.87 6.86 -51.93 -0.36 0.51 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.13 1.52 8.14 -51.92 -0.42 1.10 16 36 H 0.13 1.50 8.14 -51.92 -0.42 1.08 16 37 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 39 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 40 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.10 0.98 6.86 -51.93 -0.36 0.62 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.80 5.44 -51.93 -0.28 0.52 16 46 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 378.64 15.07 5.71 5.71 Total: -1.00 -36.38 378.64 -8.77 -45.14 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -7.68 Total: -2.66 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: 0.63 Total: -19.98 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.41 Total: -37.29 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -2.57 Total: -42.78 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Atomic # 16 Polarization: 35.87 SS G_CDS: -0.59 Total: 35.29 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.38 -8.77 -45.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188599904.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.230 kcal (2) G-P(sol) polarization free energy of solvation -36.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds