Wall clock time and date at job start Tue Mar 31 2020 17:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34220 * 117.00475 * 2 1 4 4 O 1.20832 * 119.99590 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00618 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.45756 * 300.03035 * 5 3 2 7 7 C 1.53034 * 109.45870 * 59.99758 * 5 3 2 8 8 C 1.53188 * 109.31404 * 181.39010 * 7 5 3 9 9 N 1.46933 * 108.77495 * 305.36890 * 8 7 5 10 10 S 1.65601 * 120.62562 * 233.58468 * 9 8 7 11 11 O 1.42102 * 104.28043 * 26.09280 * 10 9 8 12 12 O 1.42104 * 104.27346 * 153.94866 * 10 9 8 13 13 C 1.81394 * 104.45240 * 270.01620 * 10 9 8 14 14 C 1.52998 * 109.47333 * 180.02562 * 13 10 9 15 15 C 1.52999 * 109.47018 * 180.02562 * 14 13 10 16 16 C 1.50709 * 109.47117 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99592 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99896 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99815 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00181 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47120 * 90.00028 * 20 18 16 22 22 H 1.48502 * 109.47141 * 210.00118 * 20 18 16 23 23 H 1.48495 * 109.47286 * 330.00083 * 20 18 16 24 24 C 1.46919 * 118.74003 * 53.60503 * 9 8 7 25 25 C 1.53195 * 108.89273 * 306.32349 * 24 9 8 26 26 H 1.09002 * 109.49585 * 294.75599 * 25 24 9 27 27 C 1.53001 * 109.49760 * 174.65835 * 25 24 9 28 28 H 1.09000 * 109.47184 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46774 * 299.99746 * 1 2 3 30 30 H 1.08995 * 109.47260 * 59.99914 * 1 2 3 31 31 H 1.08994 * 109.50232 * 61.43820 * 7 5 3 32 32 H 1.09000 * 109.49784 * 301.33885 * 7 5 3 33 33 H 1.08994 * 109.59289 * 185.57924 * 8 7 5 34 34 H 1.09002 * 109.58818 * 65.14921 * 8 7 5 35 35 H 1.09001 * 109.47223 * 300.00692 * 13 10 9 36 36 H 1.09010 * 109.47051 * 60.00391 * 13 10 9 37 37 H 1.08995 * 109.47139 * 299.99928 * 14 13 10 38 38 H 1.08994 * 109.47209 * 60.00230 * 14 13 10 39 39 H 1.08996 * 109.47545 * 299.99962 * 15 14 13 40 40 H 1.08997 * 109.47510 * 60.00315 * 15 14 13 41 41 H 0.97001 * 119.99865 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.58751 * 66.18300 * 24 9 8 43 43 H 1.08996 * 109.58750 * 186.46484 * 24 9 8 44 44 H 1.09005 * 109.46904 * 59.99770 * 27 25 24 45 45 H 1.08994 * 109.46936 * 180.02562 * 27 25 24 46 46 H 1.08994 * 109.47295 * 300.00137 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9562 0.7800 0.8889 7 6 4.1127 0.5812 -1.2505 8 6 5.6436 0.6329 -1.2304 9 7 6.0676 2.0319 -1.0824 10 16 7.1321 2.7088 -2.1554 11 8 6.9500 1.9600 -3.3493 12 8 6.8388 4.0985 -2.1103 13 6 8.7663 2.3796 -1.4404 14 6 9.8484 2.9640 -2.3508 15 6 11.2268 2.6858 -1.7480 16 6 12.2926 3.2619 -2.6443 17 1 12.0145 3.7747 -3.5532 18 6 13.6226 3.1342 -2.3041 19 7 14.5527 3.6374 -3.0860 20 14 14.1035 2.2477 -0.7317 21 1 14.2942 0.8029 -1.0166 22 1 15.3696 2.8204 -0.2080 23 1 13.0289 2.4152 0.2794 24 6 5.5297 2.8187 0.0357 25 6 3.9998 2.7457 0.0028 26 1 3.6316 3.2351 -0.8989 27 6 3.4284 3.4486 1.2358 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.7433 1.0908 -2.1403 32 1 3.7840 -0.4580 -1.2630 33 1 6.0353 0.2292 -2.1640 34 1 6.0180 0.0470 -0.3909 35 1 8.8319 2.8420 -0.4555 36 1 8.9120 1.3034 -1.3470 37 1 9.7830 2.5019 -3.3357 38 1 9.7026 4.0401 -2.4438 39 1 11.2926 3.1475 -0.7629 40 1 11.3724 1.6095 -1.6553 41 1 15.4884 3.5472 -2.8468 42 1 5.8948 2.4110 0.9784 43 1 5.8481 3.8565 -0.0612 44 1 3.7423 4.4924 1.2370 45 1 2.3400 3.3960 1.2122 46 1 3.7960 2.9577 2.1369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188599904.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:54 Heat of formation + Delta-G solvation = -197.175480 kcal Electronic energy + Delta-G solvation = -27405.397306 eV Core-core repulsion = 23420.856080 eV Total energy + Delta-G solvation = -3984.541226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.85375 -39.49627 -38.26364 -37.53602 -37.03125 -36.48977 -34.42464 -34.23737 -33.15773 -30.13973 -29.09335 -27.69533 -26.31268 -25.28982 -23.28911 -22.64160 -22.14197 -21.03088 -19.82362 -18.95636 -18.86102 -18.49371 -17.70969 -17.42410 -17.24703 -17.15103 -16.24631 -16.18731 -15.59029 -15.29301 -15.10348 -15.01744 -14.87131 -14.68085 -14.24652 -14.02945 -13.64119 -13.57221 -13.50341 -13.26482 -13.21476 -13.17606 -13.00025 -12.92085 -12.68095 -12.64159 -12.53537 -12.44283 -11.98506 -11.83809 -11.81918 -11.69242 -11.63309 -11.48367 -11.40242 -11.22695 -11.10890 -10.76686 -9.93464 -8.29037 -6.35299 -0.77628 1.14726 1.38017 1.41077 1.52656 1.66366 1.76934 2.37577 2.83987 3.06041 3.14021 3.41625 3.61356 3.71379 3.74934 3.89905 3.98370 4.04540 4.22346 4.31715 4.32996 4.35316 4.36018 4.53833 4.61024 4.61195 4.69854 4.72977 4.73821 4.84806 4.87149 4.87893 4.96222 5.03308 5.12810 5.14128 5.31978 5.33902 5.35168 5.46915 5.55067 5.63415 5.67403 6.25855 6.73086 6.73401 7.29335 8.87953 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.027127 B = 0.002396 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.932452 B =11683.028713 C =11734.243740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.464 3.536 4 O -0.531 6.531 5 C -0.070 4.070 6 H 0.145 0.855 7 C -0.121 4.121 8 C 0.111 3.889 9 N -0.999 5.999 10 S 2.611 3.389 11 O -0.989 6.989 12 O -0.992 6.992 13 C -0.605 4.605 14 C -0.105 4.105 15 C -0.004 4.004 16 C -0.545 4.545 17 H 0.027 0.973 18 C -0.002 4.002 19 N -0.953 5.953 20 Si 0.958 3.042 21 H -0.264 1.264 22 H -0.287 1.287 23 H -0.236 1.236 24 C 0.118 3.882 25 C -0.087 4.087 26 H 0.054 0.946 27 C -0.157 4.157 28 H 0.130 0.870 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.156 0.844 36 H 0.159 0.841 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.267 0.733 42 H 0.112 0.888 43 H 0.090 0.910 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.923 -12.183 14.464 33.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.309 3.691 4 O -0.421 6.421 5 C -0.089 4.089 6 H 0.163 0.837 7 C -0.161 4.161 8 C -0.013 4.013 9 N -0.838 5.838 10 S 2.709 3.291 11 O -0.979 6.979 12 O -0.982 6.982 13 C -0.736 4.736 14 C -0.144 4.144 15 C -0.043 4.043 16 C -0.583 4.583 17 H 0.046 0.954 18 C -0.199 4.199 19 N -0.593 5.593 20 Si 0.780 3.220 21 H -0.189 1.189 22 H -0.213 1.213 23 H -0.159 1.159 24 C -0.007 4.007 25 C -0.107 4.107 26 H 0.072 0.928 27 C -0.215 4.215 28 H 0.148 0.852 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.131 0.869 33 H 0.114 0.886 34 H 0.133 0.867 35 H 0.174 0.826 36 H 0.177 0.823 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.130 0.870 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -28.246 -11.426 13.622 33.376 hybrid contribution 0.671 0.199 0.142 0.714 sum -27.575 -11.227 13.764 32.801 Atomic orbital electron populations 1.23507 0.75178 1.05581 1.02262 1.86500 1.24617 1.32868 1.83605 1.24192 0.92709 0.81100 0.71130 1.90615 1.68016 1.37130 1.46325 1.21260 0.85753 0.98453 1.03416 0.83695 1.21886 0.96020 1.02652 0.95505 1.21774 0.94174 0.80261 1.05090 1.57620 1.59410 1.22115 1.44630 1.04738 0.76944 0.73145 0.74234 1.93520 1.85757 1.73040 1.45590 1.93522 1.83893 1.33979 1.86856 1.30530 1.17600 1.13140 1.12330 1.21185 0.94978 1.00302 0.97979 1.19503 0.91375 0.97204 0.96195 1.21572 0.92027 1.36534 1.08169 0.95423 1.26163 0.96353 0.96160 1.01175 1.70094 1.01105 1.47740 1.40409 0.85554 0.78294 0.78832 0.79336 1.18852 1.21280 1.15921 1.21756 0.92313 0.96694 0.89922 1.21356 0.95519 0.93652 1.00201 0.92768 1.22008 1.02245 1.00729 0.96483 0.85152 0.91928 0.92560 0.92975 0.86883 0.88634 0.86722 0.82623 0.82316 0.92066 0.92228 0.94859 0.94858 0.92462 0.86993 0.89201 0.92200 0.91631 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.36 -5.00 10.44 -51.32 -0.54 -5.54 16 3 C 0.46 7.79 6.97 71.24 0.50 8.29 16 4 O -0.53 -12.16 13.34 21.95 0.29 -11.86 16 5 C -0.07 -0.87 2.15 -11.41 -0.02 -0.90 16 6 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 7 C -0.12 -1.51 5.30 30.67 0.16 -1.35 16 8 C 0.11 1.37 6.43 86.36 0.56 1.93 16 9 N -1.00 -17.51 3.22 -513.08 -1.65 -19.16 16 10 S 2.61 69.41 5.45 -56.49 -0.31 69.11 16 11 O -0.99 -32.33 16.59 -127.65 -2.12 -34.45 16 12 O -0.99 -33.41 16.59 -127.65 -2.12 -35.52 16 13 C -0.60 -14.93 6.18 71.98 0.44 -14.48 16 14 C -0.11 -3.95 5.16 30.59 0.16 -3.80 16 15 C 0.00 -0.19 4.04 29.85 0.12 -0.07 16 16 C -0.54 -31.48 9.66 25.60 0.25 -31.23 16 17 H 0.03 1.78 7.99 -2.91 -0.02 1.75 16 18 C 0.00 -0.12 5.47 84.65 0.46 0.35 16 19 N -0.95 -60.10 13.96 21.45 0.30 -59.80 16 20 Si 0.96 42.63 27.47 68.60 1.88 44.52 16 21 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 22 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 23 H -0.24 -9.33 6.54 99.48 0.65 -8.68 16 24 C 0.12 1.73 5.70 86.36 0.49 2.23 16 25 C -0.09 -1.41 2.07 -10.61 -0.02 -1.43 16 26 H 0.05 1.21 8.13 -2.39 -0.02 1.19 16 27 C -0.16 -2.31 8.87 71.98 0.64 -1.67 16 28 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.61 8.13 -2.39 -0.02 0.59 16 30 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.11 0.91 8.08 -2.39 -0.02 0.89 16 33 H 0.10 1.37 6.86 -2.39 -0.02 1.36 16 34 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.16 3.01 8.14 -2.39 -0.02 2.99 16 36 H 0.16 2.97 8.14 -2.38 -0.02 2.95 16 37 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.03 1.39 7.20 -2.39 -0.02 1.37 16 40 H 0.03 1.37 7.57 -2.39 -0.02 1.35 16 41 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 42 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.09 1.58 6.86 -2.39 -0.02 1.56 16 44 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 45 H 0.06 1.23 5.44 -2.39 -0.01 1.22 16 46 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -83.56 378.64 1.57 -81.98 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.90 Total: 11.39 kcal Atomic # 6 Polarization: -45.60 SS G_CDS: 4.93 Total: -40.67 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -1.35 Total: -78.96 kcal Atomic # 8 Polarization: -82.89 SS G_CDS: -4.48 Total: -87.37 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.88 Total: 44.52 kcal Atomic # 16 Polarization: 69.41 SS G_CDS: -0.31 Total: 69.11 kcal Total: -83.56 1.57 -81.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188599904.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.191 kcal (2) G-P(sol) polarization free energy of solvation -83.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds