Wall clock time and date at job start Tue Mar 31 2020 18:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34234 * 116.99568 * 2 1 4 4 O 1.20827 * 120.00228 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99362 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.47422 * 323.55081 * 5 3 2 7 7 C 1.52997 * 109.47295 * 83.55956 * 5 3 2 8 8 N 1.46507 * 109.46804 * 203.55612 * 5 3 2 9 9 C 1.46497 * 119.99978 * 294.64908 * 8 5 3 10 10 C 1.53781 * 113.61573 * 215.06053 * 9 8 5 11 11 C 1.53778 * 87.08240 * 220.02359 * 10 9 8 12 12 C 1.53783 * 87.08332 * 25.43186 * 11 10 9 13 13 S 1.65600 * 119.99763 * 114.92481 * 8 5 3 14 14 O 1.42104 * 104.27382 * 206.07379 * 13 8 5 15 15 O 1.42100 * 104.27787 * 333.92917 * 13 8 5 16 16 C 1.81398 * 104.45120 * 90.00220 * 13 8 5 17 17 C 1.53001 * 109.47111 * 179.97438 * 16 13 8 18 18 C 1.53002 * 109.46846 * 179.97438 * 17 16 13 19 19 C 1.50704 * 109.47006 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99607 * 359.97438 * 19 18 17 21 21 C 1.37874 * 119.99908 * 180.02562 * 19 18 17 22 22 N 1.31518 * 120.00076 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00367 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.47005 * 90.00100 * 23 21 19 25 25 H 1.48496 * 109.47581 * 210.00288 * 23 21 19 26 26 H 1.48506 * 109.47181 * 330.00747 * 23 21 19 27 27 H 1.08996 * 109.46876 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47081 * 300.00114 * 1 2 3 29 29 H 1.08997 * 109.47141 * 60.00168 * 1 2 3 30 30 H 1.09001 * 109.47157 * 174.38782 * 7 5 3 31 31 H 1.09003 * 109.47346 * 294.38751 * 7 5 3 32 32 H 1.08995 * 109.47367 * 54.39231 * 7 5 3 33 33 H 1.08997 * 112.85301 * 346.37148 * 9 8 5 34 34 H 1.09000 * 113.61120 * 334.56883 * 10 9 8 35 35 H 1.08996 * 113.61462 * 105.47147 * 10 9 8 36 36 H 1.09003 * 113.61028 * 270.88343 * 11 10 9 37 37 H 1.08998 * 113.61739 * 139.98250 * 11 10 9 38 38 H 1.08998 * 113.61319 * 220.02225 * 12 11 10 39 39 H 1.08990 * 113.69036 * 89.12816 * 12 11 10 40 40 H 1.09003 * 109.47155 * 299.99589 * 16 13 8 41 41 H 1.09000 * 109.47382 * 59.99789 * 16 13 8 42 42 H 1.08998 * 109.47053 * 299.99426 * 17 16 13 43 43 H 1.08997 * 109.47222 * 60.00216 * 17 16 13 44 44 H 1.09003 * 109.47454 * 299.99736 * 18 17 16 45 45 H 1.09000 * 109.47348 * 60.00098 * 18 17 16 46 46 H 0.96993 * 120.00517 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9727 0.4683 0.6096 7 6 4.0835 1.1403 -1.4342 8 7 3.9879 2.5648 0.5515 9 6 3.6676 3.8054 -0.1586 10 6 4.7589 4.8824 -0.0403 11 6 3.6215 5.9072 0.1048 12 6 2.7559 4.7535 0.6383 13 16 4.8325 2.6198 1.9749 14 8 4.5379 3.9038 2.5077 15 8 4.4444 1.4362 2.6587 16 6 6.5729 2.5231 1.4726 17 6 7.4653 2.5659 2.7146 18 6 8.9332 2.4837 2.2909 19 6 9.8122 2.5252 3.5144 20 1 9.3683 2.6029 4.4958 21 6 11.1831 2.4651 3.3805 22 7 11.9503 2.5008 4.4482 23 14 11.9510 2.3314 1.6829 24 1 12.2074 3.6924 1.1470 25 1 13.2323 1.5867 1.7764 26 1 11.0236 1.6089 0.7756 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 5.1622 1.2966 -1.4474 31 1 3.8563 0.1427 -1.8103 32 1 3.6007 1.8856 -2.0661 33 1 3.3312 3.6332 -1.1810 34 1 5.3744 4.7838 0.8539 35 1 5.3476 5.0091 -0.9488 36 1 3.2735 6.3107 -0.8461 37 1 3.8227 6.6808 0.8458 38 1 1.7276 4.7762 0.2775 39 1 2.8228 4.6187 1.7177 40 1 6.7443 1.5913 0.9336 41 1 6.8116 3.3667 0.8249 42 1 7.2939 3.4979 3.2532 43 1 7.2268 1.7226 3.3626 44 1 9.1044 1.5515 1.7525 45 1 9.1721 3.3268 1.6427 46 1 12.9147 2.4581 4.3542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190366902.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:08 Heat of formation + Delta-G solvation = -131.130563 kcal Electronic energy + Delta-G solvation = -28489.017567 eV Core-core repulsion = 24507.340263 eV Total energy + Delta-G solvation = -3981.677303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.87991 -39.31879 -37.32383 -36.59655 -35.88218 -35.26484 -34.87530 -32.25478 -30.65571 -28.48705 -28.10054 -25.75358 -25.48967 -24.12689 -23.44680 -21.21183 -20.64175 -20.12076 -18.83884 -18.06070 -17.51641 -17.05972 -16.84103 -16.54984 -16.26521 -15.85473 -15.54909 -14.85504 -14.43598 -14.25546 -14.17556 -14.12609 -13.80459 -13.08308 -13.00011 -12.81590 -12.61629 -12.61237 -12.39068 -12.36083 -12.13710 -12.07870 -11.92975 -11.81562 -11.75940 -11.55156 -11.05669 -11.03478 -10.98211 -10.89367 -10.84888 -10.45849 -10.21614 -10.12067 -9.90521 -9.73436 -9.31225 -9.14164 -8.60879 -6.10382 -4.09991 0.19787 1.91399 2.30182 2.61604 3.24884 3.32578 3.34115 3.82299 4.06510 4.13666 4.38272 4.42718 4.53353 4.59351 4.67294 4.73840 4.82195 4.86523 4.90399 4.94417 4.96367 5.11621 5.18975 5.23142 5.25367 5.39547 5.49005 5.62854 5.71255 5.74889 5.82314 5.89361 6.05911 6.06817 6.13772 6.20849 6.23193 6.24611 6.60789 6.61973 7.08811 7.22896 7.49785 7.68432 8.45254 8.93898 9.50480 11.02926 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016785 B = 0.003343 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.711835 B = 8374.500634 C = 8892.147597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.358 6.358 3 C 0.453 3.547 4 O -0.489 6.489 5 C 0.156 3.844 6 H 0.133 0.867 7 C -0.158 4.158 8 N -0.980 5.980 9 C 0.144 3.856 10 C -0.176 4.176 11 C -0.132 4.132 12 C -0.151 4.151 13 S 2.593 3.407 14 O -0.942 6.942 15 O -0.958 6.958 16 C -0.615 4.615 17 C -0.097 4.097 18 C -0.003 4.003 19 C -0.528 4.528 20 H 0.075 0.925 21 C 0.068 3.932 22 N -0.900 5.900 23 Si 0.880 3.120 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.266 1.266 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.106 0.894 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.021 0.979 45 H 0.016 0.984 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.348 -1.882 -15.754 26.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.274 6.274 3 C 0.293 3.707 4 O -0.374 6.374 5 C 0.047 3.953 6 H 0.151 0.849 7 C -0.217 4.217 8 N -0.813 5.813 9 C 0.039 3.961 10 C -0.214 4.214 11 C -0.170 4.170 12 C -0.190 4.190 13 S 2.691 3.309 14 O -0.933 6.933 15 O -0.948 6.948 16 C -0.747 4.747 17 C -0.137 4.137 18 C -0.042 4.042 19 C -0.566 4.566 20 H 0.093 0.907 21 C -0.134 4.134 22 N -0.538 5.538 23 Si 0.707 3.293 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.190 1.190 27 H 0.120 0.880 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.128 0.872 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.124 0.876 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.039 0.961 45 H 0.034 0.966 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.835 -1.533 -14.838 26.444 hybrid contribution 0.747 -0.087 -1.357 1.552 sum -21.088 -1.620 -16.196 26.639 Atomic orbital electron populations 1.23270 0.76287 1.03731 1.02528 1.86525 1.23476 1.33346 1.84015 1.24151 0.92256 0.81692 0.72600 1.90659 1.66660 1.36101 1.43989 1.20328 0.87761 0.87807 0.99360 0.84900 1.22137 1.03132 1.03622 0.92760 1.57846 1.69575 1.10258 1.43657 1.22390 0.96601 0.79877 0.97277 1.23797 0.97732 0.96596 1.03289 1.22536 0.96414 0.96808 1.01222 1.23620 0.98469 0.94375 1.02550 1.05784 0.77602 0.74522 0.72972 1.93559 1.82861 1.40579 1.76253 1.93571 1.81448 1.49422 1.70354 1.30738 1.21566 1.11585 1.10809 1.21332 0.97378 1.02843 0.92125 1.19526 0.90149 0.96788 0.97728 1.21125 0.90911 1.51146 0.93388 0.90731 1.25024 0.97245 0.94455 0.96668 1.69907 1.04690 1.50538 1.28708 0.86780 0.78833 0.78574 0.85090 1.20203 1.21257 1.19018 0.88029 0.91825 0.91956 0.89656 0.90015 0.91263 0.87193 0.88672 0.90480 0.90436 0.90526 0.91253 0.87603 0.85207 0.84961 0.90927 0.90972 0.96117 0.96550 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.68 10.57 -39.27 -0.41 -4.09 16 3 C 0.45 5.22 7.17 36.00 0.26 5.48 16 4 O -0.49 -6.49 14.06 -18.75 -0.26 -6.76 16 5 C 0.16 1.58 3.04 -69.08 -0.21 1.37 16 6 H 0.13 1.28 6.98 -51.93 -0.36 0.92 16 7 C -0.16 -1.06 8.98 37.16 0.33 -0.73 16 8 N -0.98 -11.46 2.70 -100.65 -0.27 -11.74 16 9 C 0.14 1.56 2.75 -67.12 -0.18 1.38 16 10 C -0.18 -1.88 6.84 -25.92 -0.18 -2.06 16 11 C -0.13 -1.39 8.08 -25.92 -0.21 -1.60 16 12 C -0.15 -1.88 6.62 -25.91 -0.17 -2.05 16 13 S 2.59 37.82 4.68 -107.50 -0.50 37.31 16 14 O -0.94 -15.63 12.73 -57.54 -0.73 -16.37 16 15 O -0.96 -16.44 16.63 -57.54 -0.96 -17.40 16 16 C -0.62 -8.60 5.92 37.16 0.22 -8.38 16 17 C -0.10 -1.85 5.16 -26.73 -0.14 -1.98 16 18 C 0.00 -0.07 4.04 -27.88 -0.11 -0.19 16 19 C -0.53 -14.81 9.66 -34.44 -0.33 -15.14 16 20 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 21 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 22 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 23 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 26 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 29 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.44 6.85 -51.93 -0.36 0.08 16 33 H 0.11 1.00 6.66 -51.93 -0.35 0.66 16 34 H 0.10 1.17 4.25 -51.93 -0.22 0.95 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.85 7.86 -51.93 -0.41 0.44 16 39 H 0.11 1.58 5.78 -51.93 -0.30 1.28 16 40 H 0.13 1.50 8.14 -51.92 -0.42 1.08 16 41 H 0.13 1.59 6.73 -51.92 -0.35 1.24 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 44 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 45 H 0.02 0.36 7.57 -51.93 -0.39 -0.04 16 46 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 373.58 15.07 5.63 5.63 Total: -1.00 -35.33 373.58 -8.51 -43.84 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -7.35 Total: 0.58 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 0.24 Total: -20.72 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.50 Total: -38.43 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -2.37 Total: -44.61 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Atomic # 16 Polarization: 37.82 SS G_CDS: -0.50 Total: 37.31 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.33 -8.51 -43.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190366902.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.292 kcal (2) G-P(sol) polarization free energy of solvation -35.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds