Wall clock time and date at job start Tue Mar 31 2020 18:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34234 * 116.99568 * 2 1 4 4 O 1.20827 * 120.00228 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99362 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.47422 * 323.55081 * 5 3 2 7 7 C 1.52997 * 109.47295 * 83.55956 * 5 3 2 8 8 N 1.46507 * 109.46804 * 203.55612 * 5 3 2 9 9 C 1.46497 * 119.99978 * 294.64908 * 8 5 3 10 10 C 1.53781 * 113.61573 * 215.06053 * 9 8 5 11 11 C 1.53778 * 87.08240 * 220.02359 * 10 9 8 12 12 C 1.53783 * 87.08332 * 25.43186 * 11 10 9 13 13 S 1.65600 * 119.99763 * 114.92481 * 8 5 3 14 14 O 1.42104 * 104.27382 * 206.07379 * 13 8 5 15 15 O 1.42100 * 104.27787 * 333.92917 * 13 8 5 16 16 C 1.81398 * 104.45120 * 90.00220 * 13 8 5 17 17 C 1.53001 * 109.47111 * 179.97438 * 16 13 8 18 18 C 1.53002 * 109.46846 * 179.97438 * 17 16 13 19 19 C 1.50704 * 109.47006 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99607 * 359.97438 * 19 18 17 21 21 C 1.37874 * 119.99908 * 180.02562 * 19 18 17 22 22 N 1.31518 * 120.00076 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00367 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.47005 * 90.00100 * 23 21 19 25 25 H 1.48496 * 109.47581 * 210.00288 * 23 21 19 26 26 H 1.48506 * 109.47181 * 330.00747 * 23 21 19 27 27 H 1.08996 * 109.46876 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47081 * 300.00114 * 1 2 3 29 29 H 1.08997 * 109.47141 * 60.00168 * 1 2 3 30 30 H 1.09001 * 109.47157 * 174.38782 * 7 5 3 31 31 H 1.09003 * 109.47346 * 294.38751 * 7 5 3 32 32 H 1.08995 * 109.47367 * 54.39231 * 7 5 3 33 33 H 1.08997 * 112.85301 * 346.37148 * 9 8 5 34 34 H 1.09000 * 113.61120 * 334.56883 * 10 9 8 35 35 H 1.08996 * 113.61462 * 105.47147 * 10 9 8 36 36 H 1.09003 * 113.61028 * 270.88343 * 11 10 9 37 37 H 1.08998 * 113.61739 * 139.98250 * 11 10 9 38 38 H 1.08998 * 113.61319 * 220.02225 * 12 11 10 39 39 H 1.08990 * 113.69036 * 89.12816 * 12 11 10 40 40 H 1.09003 * 109.47155 * 299.99589 * 16 13 8 41 41 H 1.09000 * 109.47382 * 59.99789 * 16 13 8 42 42 H 1.08998 * 109.47053 * 299.99426 * 17 16 13 43 43 H 1.08997 * 109.47222 * 60.00216 * 17 16 13 44 44 H 1.09003 * 109.47454 * 299.99736 * 18 17 16 45 45 H 1.09000 * 109.47348 * 60.00098 * 18 17 16 46 46 H 0.96993 * 120.00517 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9727 0.4683 0.6096 7 6 4.0835 1.1403 -1.4342 8 7 3.9879 2.5648 0.5515 9 6 3.6676 3.8054 -0.1586 10 6 4.7589 4.8824 -0.0403 11 6 3.6215 5.9072 0.1048 12 6 2.7559 4.7535 0.6383 13 16 4.8325 2.6198 1.9749 14 8 4.5379 3.9038 2.5077 15 8 4.4444 1.4362 2.6587 16 6 6.5729 2.5231 1.4726 17 6 7.4653 2.5659 2.7146 18 6 8.9332 2.4837 2.2909 19 6 9.8122 2.5252 3.5144 20 1 9.3683 2.6029 4.4958 21 6 11.1831 2.4651 3.3805 22 7 11.9503 2.5008 4.4482 23 14 11.9510 2.3314 1.6829 24 1 12.2074 3.6924 1.1470 25 1 13.2323 1.5867 1.7764 26 1 11.0236 1.6089 0.7756 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 5.1622 1.2966 -1.4474 31 1 3.8563 0.1427 -1.8103 32 1 3.6007 1.8856 -2.0661 33 1 3.3312 3.6332 -1.1810 34 1 5.3744 4.7838 0.8539 35 1 5.3476 5.0091 -0.9488 36 1 3.2735 6.3107 -0.8461 37 1 3.8227 6.6808 0.8458 38 1 1.7276 4.7762 0.2775 39 1 2.8228 4.6187 1.7177 40 1 6.7443 1.5913 0.9336 41 1 6.8116 3.3667 0.8249 42 1 7.2939 3.4979 3.2532 43 1 7.2268 1.7226 3.3626 44 1 9.1044 1.5515 1.7525 45 1 9.1721 3.3268 1.6427 46 1 12.9147 2.4581 4.3542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190366902.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:07 Heat of formation + Delta-G solvation = -155.406803 kcal Electronic energy + Delta-G solvation = -28490.070263 eV Core-core repulsion = 24507.340263 eV Total energy + Delta-G solvation = -3982.730000 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.70371 -40.19184 -38.41055 -37.50244 -37.10223 -36.52820 -36.10885 -34.25695 -31.40241 -30.21525 -28.71047 -26.65123 -26.27873 -25.40362 -24.65418 -22.38333 -21.82940 -21.17640 -19.94975 -18.99293 -18.88554 -18.37827 -17.93854 -17.37529 -17.31936 -16.96262 -16.57736 -16.21804 -15.83717 -15.63686 -15.00800 -14.87445 -14.79292 -14.60057 -14.08552 -13.92332 -13.76219 -13.51903 -13.47895 -13.32584 -13.25992 -13.22958 -12.94885 -12.89821 -12.70103 -12.64309 -12.59155 -12.45816 -11.84041 -11.80728 -11.76141 -11.72049 -11.63004 -11.40150 -11.33982 -11.23064 -11.05668 -10.75815 -10.09918 -8.28174 -6.34551 -0.93630 1.06102 1.39340 1.42064 1.42372 1.53702 1.78055 2.38571 2.70808 2.99903 3.07282 3.28280 3.64651 3.68727 3.76315 3.81623 3.88185 3.96158 4.00538 4.11782 4.25970 4.29249 4.31764 4.34993 4.53921 4.62116 4.69256 4.76266 4.84256 4.87754 4.92635 4.94865 5.00148 5.09686 5.17925 5.25481 5.32036 5.33811 5.34431 5.39585 5.47456 5.63954 5.72473 6.26470 6.67682 6.74005 7.30247 8.88967 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016785 B = 0.003343 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.711835 B = 8374.500634 C = 8892.147597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.449 3.551 4 O -0.514 6.514 5 C 0.147 3.853 6 H 0.136 0.864 7 C -0.153 4.153 8 N -0.973 5.973 9 C 0.150 3.850 10 C -0.177 4.177 11 C -0.128 4.128 12 C -0.165 4.165 13 S 2.600 3.400 14 O -0.970 6.970 15 O -0.991 6.991 16 C -0.603 4.603 17 C -0.103 4.103 18 C -0.003 4.003 19 C -0.544 4.544 20 H 0.027 0.973 21 C -0.001 4.001 22 N -0.954 5.954 23 Si 0.956 3.044 24 H -0.265 1.265 25 H -0.287 1.287 26 H -0.233 1.233 27 H 0.131 0.869 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.136 0.864 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.163 0.837 41 H 0.160 0.840 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.036 0.964 45 H 0.034 0.966 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.392 -2.519 -20.234 29.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.289 3.711 4 O -0.401 6.401 5 C 0.039 3.961 6 H 0.153 0.847 7 C -0.212 4.212 8 N -0.808 5.808 9 C 0.045 3.955 10 C -0.216 4.216 11 C -0.166 4.166 12 C -0.204 4.204 13 S 2.700 3.300 14 O -0.961 6.961 15 O -0.981 6.981 16 C -0.735 4.735 17 C -0.142 4.142 18 C -0.041 4.041 19 C -0.583 4.583 20 H 0.046 0.954 21 C -0.197 4.197 22 N -0.595 5.595 23 Si 0.778 3.222 24 H -0.190 1.190 25 H -0.213 1.213 26 H -0.156 1.156 27 H 0.149 0.851 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.094 0.906 33 H 0.153 0.847 34 H 0.095 0.905 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.181 0.819 41 H 0.178 0.822 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.055 0.945 45 H 0.052 0.948 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.918 -2.183 -19.307 29.290 hybrid contribution 0.630 0.102 0.169 0.661 sum -21.287 -2.081 -19.138 28.701 Atomic orbital electron populations 1.23534 0.74898 1.05679 1.02370 1.86517 1.24927 1.32784 1.83627 1.24528 0.92961 0.81656 0.71911 1.90650 1.67330 1.36844 1.45311 1.20702 0.86958 0.86801 1.01661 0.84667 1.22201 1.04065 1.04910 0.89998 1.57547 1.69053 1.11458 1.42784 1.22528 0.96078 0.79184 0.97748 1.23807 0.97712 0.96158 1.03890 1.22583 0.95958 0.96044 1.01973 1.23601 0.99041 0.96795 1.00968 1.05301 0.78088 0.73263 0.73371 1.93536 1.83461 1.41609 1.77466 1.93524 1.82241 1.50513 1.71852 1.30601 1.19274 1.14724 1.08922 1.21185 0.96567 1.02042 0.94414 1.19495 0.91095 0.98025 0.95526 1.21562 0.92139 1.50723 0.93831 0.95435 1.26143 0.97840 0.93905 1.01815 1.70090 1.05164 1.52331 1.31901 0.85585 0.77992 0.79401 0.79247 1.18971 1.21335 1.15594 0.85088 0.92893 0.91251 0.87923 0.88343 0.90628 0.84652 0.90461 0.87345 0.87834 0.91689 0.91677 0.90781 0.81861 0.82190 0.92050 0.92040 0.94524 0.94809 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.58 16 2 O -0.36 -6.95 10.57 -51.45 -0.54 -7.49 16 3 C 0.45 9.73 7.17 71.23 0.51 10.24 16 4 O -0.51 -13.28 14.06 21.96 0.31 -12.97 16 5 C 0.15 2.62 3.04 44.24 0.13 2.76 16 6 H 0.14 2.35 6.98 -2.39 -0.02 2.33 16 7 C -0.15 -1.43 8.98 71.98 0.65 -0.78 16 8 N -0.97 -20.92 2.70 -472.36 -1.28 -22.20 16 9 C 0.15 2.90 2.75 45.52 0.13 3.02 16 10 C -0.18 -3.30 6.84 31.12 0.21 -3.08 16 11 C -0.13 -2.49 8.08 31.12 0.25 -2.24 16 12 C -0.16 -4.03 6.62 31.12 0.21 -3.82 16 13 S 2.60 74.11 4.68 -56.49 -0.26 73.85 16 14 O -0.97 -32.91 12.73 -127.65 -1.63 -34.53 16 15 O -0.99 -34.21 16.63 -127.65 -2.12 -36.33 16 16 C -0.60 -15.18 5.92 71.98 0.43 -14.75 16 17 C -0.10 -3.82 5.16 30.59 0.16 -3.66 16 18 C 0.00 -0.12 4.04 29.85 0.12 0.00 16 19 C -0.54 -31.12 9.66 25.60 0.25 -30.87 16 20 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 21 C 0.00 -0.03 5.47 84.65 0.46 0.43 16 22 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 23 Si 0.96 42.14 27.47 68.60 1.88 44.02 16 24 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 25 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 26 H -0.23 -9.01 6.54 99.48 0.65 -8.36 16 27 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.05 0.83 8.13 -2.39 -0.02 0.81 16 29 H 0.07 0.84 8.13 -2.39 -0.02 0.82 16 30 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.10 0.62 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.63 6.85 -2.39 -0.02 0.62 16 33 H 0.14 1.97 6.66 -2.39 -0.02 1.96 16 34 H 0.08 1.75 4.25 -2.39 -0.01 1.74 16 35 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.59 7.86 -2.39 -0.02 1.57 16 39 H 0.07 2.31 5.78 -2.39 -0.01 2.29 16 40 H 0.16 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.16 3.18 6.73 -2.39 -0.02 3.17 16 42 H 0.06 2.36 8.14 -2.39 -0.02 2.35 16 43 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.04 1.49 7.20 -2.39 -0.02 1.47 16 45 H 0.03 1.36 7.57 -2.39 -0.02 1.35 16 46 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -80.82 373.58 2.27 -78.54 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.91 Total: 17.93 kcal Atomic # 6 Polarization: -45.88 SS G_CDS: 4.70 Total: -41.18 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -0.98 Total: -81.83 kcal Atomic # 8 Polarization: -87.35 SS G_CDS: -3.98 Total: -91.33 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.88 Total: 44.02 kcal Atomic # 16 Polarization: 74.11 SS G_CDS: -0.26 Total: 73.85 kcal Total: -80.82 2.27 -78.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190366902.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.862 kcal (2) G-P(sol) polarization free energy of solvation -80.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds