Wall clock time and date at job start Tue Mar 31 2020 18:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35991 * 117.00010 * 2 1 4 4 C 1.38133 * 119.90078 * 0.31652 * 3 2 1 5 5 C 1.39925 * 119.87863 * 180.27253 * 4 3 2 6 6 C 1.47000 * 120.10574 * 179.76816 * 5 4 3 7 7 C 1.34988 * 120.00079 * 359.72804 * 6 5 4 8 8 C 1.46253 * 120.00015 * 179.97438 * 7 6 5 9 9 O 1.21718 * 119.99669 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00191 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00376 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46725 * 35.00314 * 11 10 8 13 13 C 1.52997 * 109.47188 * 275.00479 * 11 10 8 14 14 C 1.50697 * 109.47081 * 155.00043 * 11 10 8 15 15 H 1.07999 * 120.00055 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99687 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00458 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 119.99926 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.46872 * 59.99743 * 18 16 14 20 20 H 1.48503 * 109.47008 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.46914 * 299.99916 * 18 16 14 22 22 C 1.39891 * 119.78074 * 359.49697 * 5 4 3 23 23 C 1.38322 * 120.04337 * 0.22254 * 22 5 4 24 24 C 1.39156 * 120.02146 * 359.96869 * 23 22 5 25 25 O 1.36096 * 120.71933 * 180.20922 * 24 23 22 26 26 C 1.43158 * 116.72711 * 342.66405 * 25 24 23 27 27 C 1.53463 * 108.23555 * 46.34903 * 26 25 24 28 28 O 1.36164 * 119.22668 * 179.82384 * 23 22 5 29 29 H 1.08998 * 109.46958 * 60.00311 * 1 2 3 30 30 H 1.09000 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46845 * 299.99850 * 1 2 3 32 32 H 1.08005 * 120.05442 * 0.02562 * 4 3 2 33 33 H 1.07994 * 119.99692 * 179.72333 * 6 5 4 34 34 H 1.08002 * 120.00274 * 359.97438 * 7 6 5 35 35 H 0.97006 * 119.99702 * 0.02562 * 10 8 7 36 36 H 1.09002 * 109.47153 * 299.99573 * 13 11 10 37 37 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 38 38 H 1.09004 * 109.47261 * 59.99745 * 13 11 10 39 39 H 0.96999 * 120.00480 * 179.97438 * 17 16 14 40 40 H 1.08006 * 119.97508 * 180.24579 * 22 5 4 41 41 H 1.09006 * 109.70956 * 286.66033 * 26 25 24 42 42 H 1.09006 * 109.70492 * 166.03575 * 26 25 24 43 43 H 1.08998 * 109.71348 * 180.50453 * 27 26 25 44 44 H 1.08998 * 109.70804 * 59.87416 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2921 2.3689 0.0066 5 6 1.9278 3.6154 0.0008 6 6 1.1299 4.8500 0.0027 7 6 -0.2183 4.7823 0.0044 8 6 -1.0121 6.0107 0.0068 9 8 -0.4570 7.0939 0.0068 10 7 -2.3582 5.9432 0.0080 11 6 -3.1534 7.1736 0.0110 12 1 -2.6441 7.9367 -0.5776 13 6 -3.3231 7.6676 1.4490 14 6 -4.5081 6.8976 -0.5886 15 1 -4.7525 5.9048 -0.9367 16 6 -5.4355 7.9125 -0.6928 17 7 -5.1381 9.1212 -0.2685 18 14 -7.1151 7.5703 -1.4354 19 1 -7.8088 6.5312 -0.6326 20 1 -7.9211 8.8175 -1.4325 21 1 -6.9507 7.0898 -2.8308 22 6 3.3251 3.6827 -0.0010 23 6 4.0744 2.5201 -0.0017 24 6 3.4389 1.2821 0.0000 25 8 4.1622 0.1293 0.0036 26 6 5.5389 0.2318 -0.3755 27 6 6.1538 1.4258 0.3669 28 8 5.4334 2.6050 -0.0071 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2136 2.3115 0.0122 33 1 1.6224 5.8111 0.0027 34 1 -0.7108 3.8212 0.0040 35 1 -2.8005 5.0798 0.0077 36 1 -3.8323 6.9046 2.0377 37 1 -3.9144 8.5834 1.4511 38 1 -2.3432 7.8673 1.8827 39 1 -5.7905 9.8353 -0.3422 40 1 3.8190 4.6432 -0.0014 41 1 5.6131 0.3900 -1.4515 42 1 6.0648 -0.6826 -0.1007 43 1 7.2023 1.5317 0.0883 44 1 6.0726 1.2711 1.4428 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194716138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:10 Heat of formation + Delta-G solvation = -102.397342 kcal Electronic energy + Delta-G solvation = -27575.086948 eV Core-core repulsion = 23459.211659 eV Total energy + Delta-G solvation = -4115.875289 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.60589 -39.63628 -38.89598 -37.68669 -37.07494 -34.87220 -33.47791 -32.36240 -30.90036 -30.27457 -29.10290 -28.31581 -27.38686 -25.39420 -25.23380 -23.46832 -22.30882 -21.28550 -20.05590 -19.26536 -18.98420 -17.98669 -17.65037 -17.41001 -16.45069 -16.08227 -15.90412 -15.58262 -15.30904 -15.19898 -15.06838 -14.67988 -14.53672 -14.31735 -14.01783 -13.66754 -13.44605 -13.03914 -12.81506 -12.60782 -12.39408 -12.02060 -11.75664 -11.62857 -11.59177 -11.51037 -11.24200 -11.09102 -10.96387 -10.86360 -10.74282 -10.33565 -10.23418 -9.51431 -9.14349 -9.05200 -8.55254 -8.48834 -8.00947 -7.78883 -6.12234 -4.21769 0.44410 1.06935 1.99824 2.65293 2.83231 2.99886 3.25342 3.30689 3.31729 3.47485 3.89239 4.01811 4.08054 4.36022 4.42752 4.45845 4.51800 4.62494 4.70526 4.88200 4.94516 4.95457 5.02770 5.05136 5.11321 5.19935 5.28393 5.33923 5.60777 5.69189 5.78649 5.90294 6.18180 6.43344 6.51690 6.56296 6.83701 6.86034 6.97343 7.15307 7.23840 7.45488 7.56540 7.69769 7.91814 8.14974 8.66016 8.77610 9.11732 9.45672 10.93716 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021795 B = 0.002154 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.417690 B =12996.331704 C =13987.901620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.305 6.305 3 C 0.138 3.862 4 C -0.195 4.195 5 C -0.013 4.013 6 C -0.049 4.049 7 C -0.178 4.178 8 C 0.528 3.472 9 O -0.557 6.557 10 N -0.701 5.701 11 C 0.263 3.737 12 H 0.050 0.950 13 C -0.147 4.147 14 C -0.535 4.535 15 H 0.061 0.939 16 C 0.066 3.934 17 N -0.883 5.883 18 Si 0.902 3.098 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.129 4.129 23 C 0.086 3.914 24 C 0.018 3.982 25 O -0.295 6.295 26 C 0.019 3.981 27 C 0.019 3.981 28 O -0.302 6.302 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.145 0.855 33 H 0.140 0.860 34 H 0.122 0.878 35 H 0.389 0.611 36 H 0.026 0.974 37 H 0.090 0.910 38 H 0.015 0.985 39 H 0.265 0.735 40 H 0.143 0.857 41 H 0.077 0.923 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.244 -20.135 1.317 27.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.092 3.908 4 C -0.213 4.213 5 C -0.014 4.014 6 C -0.069 4.069 7 C -0.199 4.199 8 C 0.315 3.685 9 O -0.438 6.438 10 N -0.348 5.348 11 C 0.161 3.839 12 H 0.067 0.933 13 C -0.206 4.206 14 C -0.573 4.573 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.520 5.520 18 Si 0.730 3.270 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.202 1.202 22 C -0.148 4.148 23 C 0.040 3.960 24 C -0.027 4.027 25 O -0.210 6.210 26 C -0.057 4.057 27 C -0.056 4.056 28 O -0.216 6.216 29 H 0.078 0.922 30 H 0.120 0.880 31 H 0.077 0.923 32 H 0.162 0.838 33 H 0.158 0.842 34 H 0.140 0.860 35 H 0.221 0.779 36 H 0.045 0.955 37 H 0.109 0.891 38 H 0.034 0.966 39 H 0.075 0.925 40 H 0.161 0.839 41 H 0.095 0.905 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 19.630 -19.370 1.335 27.610 hybrid contribution -1.220 -0.627 -0.378 1.423 sum 18.410 -19.997 0.957 27.198 Atomic orbital electron populations 1.23159 0.77965 1.04269 1.01835 1.86151 1.21461 1.25594 1.88639 1.17937 0.88500 0.85273 0.99100 1.21297 1.00504 0.90578 1.08970 1.18510 0.91905 0.92515 0.98472 1.22170 0.93513 0.96460 0.94755 1.23273 0.94944 0.98488 1.03179 1.18208 0.83300 0.88873 0.78153 1.90776 1.71638 1.29915 1.51471 1.46468 1.05227 1.11739 1.71337 1.18763 0.89482 0.81574 0.94042 0.93261 1.22078 0.98477 1.02688 0.97310 1.21173 0.98071 0.96491 1.41571 0.92126 1.24894 0.98798 0.94878 0.95171 1.69889 1.35415 1.01022 1.45716 0.86499 0.83256 0.77622 0.79651 1.20174 1.21126 1.20176 1.20509 0.91963 0.96911 1.05445 1.18391 0.83027 0.92153 1.02399 1.18123 0.88870 0.85292 1.10412 1.86383 1.22104 1.27981 1.84508 1.23637 0.81331 1.00644 1.00066 1.23667 0.97144 0.84527 1.00298 1.86361 1.14449 1.36375 1.84427 0.92235 0.87979 0.92255 0.83789 0.84200 0.85996 0.77854 0.95465 0.89117 0.96583 0.92496 0.83913 0.90509 0.86049 0.85952 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.53 10.24 -35.16 -0.36 -3.89 16 3 C 0.14 1.68 6.69 -39.18 -0.26 1.42 16 4 C -0.19 -2.24 8.39 -38.99 -0.33 -2.57 16 5 C -0.01 -0.17 5.87 -105.10 -0.62 -0.78 16 6 C -0.05 -0.68 9.45 -37.19 -0.35 -1.03 16 7 C -0.18 -2.64 9.41 -37.52 -0.35 -2.99 16 8 C 0.53 10.63 7.70 -13.04 -0.10 10.53 16 9 O -0.56 -13.43 15.89 5.17 0.08 -13.35 16 10 N -0.70 -14.62 5.06 -56.38 -0.29 -14.90 16 11 C 0.26 6.73 2.56 -69.09 -0.18 6.55 16 12 H 0.05 1.46 7.57 -51.93 -0.39 1.06 16 13 C -0.15 -3.68 9.26 37.16 0.34 -3.33 16 14 C -0.53 -14.13 8.73 -34.44 -0.30 -14.43 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 17 N -0.88 -24.89 11.32 55.43 0.63 -24.26 16 18 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 C -0.13 -1.53 9.70 -38.93 -0.38 -1.91 16 23 C 0.09 1.01 6.48 -39.21 -0.25 0.76 16 24 C 0.02 0.23 6.52 -38.80 -0.25 -0.03 16 25 O -0.30 -3.34 10.16 -44.93 -0.46 -3.80 16 26 C 0.02 0.13 7.26 37.40 0.27 0.40 16 27 C 0.02 0.12 7.26 37.40 0.27 0.40 16 28 O -0.30 -3.14 10.41 -33.04 -0.34 -3.48 16 29 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 30 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.41 7.64 -51.93 -0.40 0.01 16 32 H 0.14 1.39 4.37 -52.48 -0.23 1.16 16 33 H 0.14 2.02 7.52 -52.49 -0.39 1.62 16 34 H 0.12 1.41 6.07 -52.49 -0.32 1.09 16 35 H 0.39 6.87 8.52 -40.82 -0.35 6.52 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.14 1.50 8.06 -52.48 -0.42 1.07 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.12 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 370.85 15.07 5.59 5.59 Total: -1.00 -33.95 370.85 -7.47 -41.43 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.72 Total: 5.31 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -1.59 Total: -4.18 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.34 Total: -39.16 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -1.08 Total: -24.52 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.95 -7.47 -41.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194716138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.968 kcal (2) G-P(sol) polarization free energy of solvation -33.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds