Wall clock time and date at job start Tue Mar 31 2020 18:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35991 * 117.00010 * 2 1 4 4 C 1.38133 * 119.90078 * 0.31652 * 3 2 1 5 5 C 1.39925 * 119.87863 * 180.27253 * 4 3 2 6 6 C 1.47000 * 120.10574 * 179.76816 * 5 4 3 7 7 C 1.34988 * 120.00079 * 359.72804 * 6 5 4 8 8 C 1.46253 * 120.00015 * 179.97438 * 7 6 5 9 9 O 1.21718 * 119.99669 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00191 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00376 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46725 * 35.00314 * 11 10 8 13 13 C 1.52997 * 109.47188 * 275.00479 * 11 10 8 14 14 C 1.50697 * 109.47081 * 155.00043 * 11 10 8 15 15 H 1.07999 * 120.00055 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99687 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00458 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 119.99926 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.46872 * 59.99743 * 18 16 14 20 20 H 1.48503 * 109.47008 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.46914 * 299.99916 * 18 16 14 22 22 C 1.39891 * 119.78074 * 359.49697 * 5 4 3 23 23 C 1.38322 * 120.04337 * 0.22254 * 22 5 4 24 24 C 1.39156 * 120.02146 * 359.96869 * 23 22 5 25 25 O 1.36096 * 120.71933 * 180.20922 * 24 23 22 26 26 C 1.43158 * 116.72711 * 342.66405 * 25 24 23 27 27 C 1.53463 * 108.23555 * 46.34903 * 26 25 24 28 28 O 1.36164 * 119.22668 * 179.82384 * 23 22 5 29 29 H 1.08998 * 109.46958 * 60.00311 * 1 2 3 30 30 H 1.09000 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46845 * 299.99850 * 1 2 3 32 32 H 1.08005 * 120.05442 * 0.02562 * 4 3 2 33 33 H 1.07994 * 119.99692 * 179.72333 * 6 5 4 34 34 H 1.08002 * 120.00274 * 359.97438 * 7 6 5 35 35 H 0.97006 * 119.99702 * 0.02562 * 10 8 7 36 36 H 1.09002 * 109.47153 * 299.99573 * 13 11 10 37 37 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 38 38 H 1.09004 * 109.47261 * 59.99745 * 13 11 10 39 39 H 0.96999 * 120.00480 * 179.97438 * 17 16 14 40 40 H 1.08006 * 119.97508 * 180.24579 * 22 5 4 41 41 H 1.09006 * 109.70956 * 286.66033 * 26 25 24 42 42 H 1.09006 * 109.70492 * 166.03575 * 26 25 24 43 43 H 1.08998 * 109.71348 * 180.50453 * 27 26 25 44 44 H 1.08998 * 109.70804 * 59.87416 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2921 2.3689 0.0066 5 6 1.9278 3.6154 0.0008 6 6 1.1299 4.8500 0.0027 7 6 -0.2183 4.7823 0.0044 8 6 -1.0121 6.0107 0.0068 9 8 -0.4570 7.0939 0.0068 10 7 -2.3582 5.9432 0.0080 11 6 -3.1534 7.1736 0.0110 12 1 -2.6441 7.9367 -0.5776 13 6 -3.3231 7.6676 1.4490 14 6 -4.5081 6.8976 -0.5886 15 1 -4.7525 5.9048 -0.9367 16 6 -5.4355 7.9125 -0.6928 17 7 -5.1381 9.1212 -0.2685 18 14 -7.1151 7.5703 -1.4354 19 1 -7.8088 6.5312 -0.6326 20 1 -7.9211 8.8175 -1.4325 21 1 -6.9507 7.0898 -2.8308 22 6 3.3251 3.6827 -0.0010 23 6 4.0744 2.5201 -0.0017 24 6 3.4389 1.2821 0.0000 25 8 4.1622 0.1293 0.0036 26 6 5.5389 0.2318 -0.3755 27 6 6.1538 1.4258 0.3669 28 8 5.4334 2.6050 -0.0071 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2136 2.3115 0.0122 33 1 1.6224 5.8111 0.0027 34 1 -0.7108 3.8212 0.0040 35 1 -2.8005 5.0798 0.0077 36 1 -3.8323 6.9046 2.0377 37 1 -3.9144 8.5834 1.4511 38 1 -2.3432 7.8673 1.8827 39 1 -5.7905 9.8353 -0.3422 40 1 3.8190 4.6432 -0.0014 41 1 5.6131 0.3900 -1.4515 42 1 6.0648 -0.6826 -0.1007 43 1 7.2023 1.5317 0.0883 44 1 6.0726 1.2711 1.4428 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194716138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:09 Heat of formation + Delta-G solvation = -125.200327 kcal Electronic energy + Delta-G solvation = -27576.075759 eV Core-core repulsion = 23459.211659 eV Total energy + Delta-G solvation = -4116.864100 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.38017 -40.63354 -40.29709 -38.54591 -37.89646 -36.73785 -34.57061 -34.27558 -31.75704 -31.24777 -30.65543 -29.22961 -28.15640 -27.33298 -26.18605 -24.64211 -23.24096 -22.56811 -21.47984 -20.66222 -19.81214 -19.05093 -18.60923 -18.46444 -17.69492 -17.33509 -17.05229 -16.80791 -16.32320 -16.00930 -15.97931 -15.79592 -15.68404 -15.63098 -15.29458 -14.97285 -14.41794 -14.24890 -14.12198 -13.72896 -13.66826 -13.42889 -12.98742 -12.87097 -12.76247 -12.69523 -12.60972 -12.38131 -12.26757 -12.24168 -12.13988 -11.87132 -11.54864 -11.11187 -10.84686 -10.58209 -10.55761 -9.74831 -9.32867 -8.80546 -8.16172 -6.33946 -0.58280 0.20129 0.90140 1.46252 1.48552 1.56303 1.93078 2.12104 2.29539 2.36269 2.38183 2.67812 2.72457 3.14168 3.32326 3.56559 3.72075 3.83655 3.98340 3.99173 4.12640 4.15012 4.24460 4.34394 4.41494 4.43278 4.56850 4.61588 4.75821 4.76826 4.83303 4.85243 4.93548 4.98315 5.09991 5.24091 5.36622 5.46808 5.51098 5.61827 5.70872 5.78049 5.93137 6.10551 6.11046 6.45544 6.73499 6.97895 7.33281 7.55903 8.90046 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021795 B = 0.002154 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.417690 B =12996.331704 C =13987.901620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.322 6.322 3 C 0.125 3.875 4 C -0.187 4.187 5 C -0.027 4.027 6 C -0.023 4.023 7 C -0.190 4.190 8 C 0.525 3.475 9 O -0.607 6.607 10 N -0.698 5.698 11 C 0.269 3.731 12 H -0.002 1.002 13 C -0.134 4.134 14 C -0.547 4.547 15 H 0.075 0.925 16 C 0.012 3.988 17 N -0.918 5.918 18 Si 0.974 3.026 19 H -0.263 1.263 20 H -0.287 1.287 21 H -0.271 1.271 22 C -0.133 4.133 23 C 0.079 3.921 24 C 0.013 3.987 25 O -0.314 6.314 26 C 0.012 3.988 27 C 0.013 3.987 28 O -0.315 6.315 29 H 0.067 0.933 30 H 0.121 0.879 31 H 0.068 0.932 32 H 0.163 0.837 33 H 0.128 0.872 34 H 0.161 0.839 35 H 0.407 0.593 36 H 0.042 0.958 37 H 0.067 0.933 38 H 0.011 0.989 39 H 0.265 0.735 40 H 0.150 0.850 41 H 0.080 0.920 42 H 0.155 0.845 43 H 0.158 0.842 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.453 -23.091 1.101 30.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.235 6.235 3 C 0.079 3.921 4 C -0.205 4.205 5 C -0.028 4.028 6 C -0.043 4.043 7 C -0.211 4.211 8 C 0.315 3.685 9 O -0.491 6.491 10 N -0.345 5.345 11 C 0.165 3.835 12 H 0.016 0.984 13 C -0.193 4.193 14 C -0.585 4.585 15 H 0.094 0.906 16 C -0.188 4.188 17 N -0.556 5.556 18 Si 0.799 3.201 19 H -0.187 1.187 20 H -0.213 1.213 21 H -0.196 1.196 22 C -0.151 4.151 23 C 0.034 3.966 24 C -0.033 4.033 25 O -0.229 6.229 26 C -0.063 4.063 27 C -0.061 4.061 28 O -0.230 6.230 29 H 0.086 0.914 30 H 0.140 0.860 31 H 0.086 0.914 32 H 0.181 0.819 33 H 0.146 0.854 34 H 0.178 0.822 35 H 0.243 0.757 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.030 0.970 39 H 0.074 0.926 40 H 0.168 0.832 41 H 0.098 0.902 42 H 0.172 0.828 43 H 0.175 0.825 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 19.849 -22.386 1.123 29.940 hybrid contribution -1.052 0.191 -0.308 1.113 sum 18.797 -22.195 0.815 29.097 Atomic orbital electron populations 1.23455 0.76119 1.05947 1.02652 1.86136 1.23452 1.25345 1.88591 1.18107 0.88808 0.85758 0.99427 1.21446 1.01414 0.89915 1.07766 1.18370 0.91975 0.92071 1.00372 1.22189 0.93353 0.96816 0.91933 1.23018 0.94625 0.97342 1.06078 1.18966 0.83062 0.90002 0.76456 1.90748 1.72368 1.32376 1.53639 1.46185 1.05538 1.11082 1.71715 1.18364 0.89488 0.82343 0.93302 0.98431 1.21902 0.97909 1.02026 0.97438 1.21515 0.98242 0.97217 1.41527 0.90649 1.25836 1.02857 0.94571 0.95512 1.70050 1.36716 1.02023 1.46833 0.85368 0.78274 0.77543 0.78960 1.18737 1.21307 1.19561 1.20666 0.92038 0.97519 1.04926 1.18434 0.83858 0.91936 1.02422 1.18378 0.89405 0.85792 1.09681 1.86350 1.24183 1.27834 1.84515 1.24000 0.79469 1.02411 1.00375 1.24022 0.98353 0.83142 1.00578 1.86339 1.13754 1.38451 1.84444 0.91407 0.86047 0.91350 0.81945 0.85377 0.82204 0.75711 0.93935 0.91459 0.96957 0.92552 0.83218 0.90224 0.82775 0.82496 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.32 -6.89 10.24 -78.68 -0.81 -7.70 16 3 C 0.13 2.88 6.69 22.53 0.15 3.03 16 4 C -0.19 -3.95 8.39 22.65 0.19 -3.76 16 5 C -0.03 -0.64 5.87 -20.17 -0.12 -0.76 16 6 C -0.02 -0.62 9.45 23.82 0.23 -0.39 16 7 C -0.19 -5.43 9.41 23.61 0.22 -5.21 16 8 C 0.53 21.37 7.70 86.33 0.66 22.03 16 9 O -0.61 -30.46 15.89 -4.41 -0.07 -30.53 16 10 N -0.70 -29.08 5.06 -450.51 -2.28 -31.36 16 11 C 0.27 14.08 2.56 44.24 0.11 14.19 16 12 H 0.00 -0.14 7.57 -2.39 -0.02 -0.16 16 13 C -0.13 -6.87 9.26 71.98 0.67 -6.21 16 14 C -0.55 -28.88 8.73 25.60 0.22 -28.66 16 15 H 0.08 3.67 7.74 -2.91 -0.02 3.64 16 16 C 0.01 0.66 5.30 84.66 0.45 1.11 16 17 N -0.92 -52.90 11.32 21.45 0.24 -52.66 16 18 Si 0.97 41.77 29.54 68.60 2.03 43.80 16 19 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 20 H -0.29 -12.30 7.11 99.48 0.71 -11.60 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 22 C -0.13 -3.04 9.70 22.69 0.22 -2.82 16 23 C 0.08 1.79 6.48 22.51 0.15 1.94 16 24 C 0.01 0.31 6.52 22.78 0.15 0.46 16 25 O -0.31 -6.64 10.16 -70.84 -0.72 -7.36 16 26 C 0.01 0.14 7.26 72.14 0.52 0.66 16 27 C 0.01 0.14 7.26 72.14 0.52 0.67 16 28 O -0.32 -6.12 10.41 -83.20 -0.87 -6.98 16 29 H 0.07 0.76 7.67 -2.39 -0.02 0.74 16 30 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 0.76 7.64 -2.39 -0.02 0.74 16 32 H 0.16 2.67 4.37 -2.91 -0.01 2.66 16 33 H 0.13 3.76 7.52 -2.91 -0.02 3.73 16 34 H 0.16 3.24 6.07 -2.91 -0.02 3.22 16 35 H 0.41 13.82 8.52 -92.70 -0.79 13.03 16 36 H 0.04 1.98 8.14 -2.39 -0.02 1.97 16 37 H 0.07 3.77 6.07 -2.39 -0.01 3.75 16 38 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 39 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 40 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 41 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.15 0.65 8.14 -2.38 -0.02 0.63 16 43 H 0.16 0.52 8.14 -2.39 -0.02 0.51 16 44 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -76.07 370.85 3.24 -72.83 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.26 Total: 22.41 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: 5.46 Total: -2.44 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -2.04 Total: -84.02 kcal Atomic # 8 Polarization: -50.11 SS G_CDS: -2.46 Total: -52.57 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -76.07 3.24 -72.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194716138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.370 kcal (2) G-P(sol) polarization free energy of solvation -76.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds