Wall clock time and date at job start Tue Mar 31 2020 16:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34225 * 117.00003 * 2 1 4 4 O 1.20830 * 120.00164 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99961 * 180.02562 * 3 2 1 6 6 H 1.09000 * 110.01479 * 300.05851 * 5 3 2 7 7 C 1.54265 * 110.03103 * 61.45216 * 5 3 2 8 8 C 1.54895 * 104.31360 * 95.60990 * 7 5 3 9 9 C 1.55241 * 102.58884 * 37.92911 * 8 7 5 10 10 C 1.53884 * 110.03151 * 178.61773 * 5 3 2 11 11 H 1.09002 * 110.03150 * 0.04842 * 10 5 3 12 12 S 1.81396 * 110.02915 * 121.42920 * 10 5 3 13 13 O 1.42093 * 110.54763 * 292.01060 * 12 10 5 14 14 O 1.42101 * 110.54214 * 68.76499 * 12 10 5 15 15 N 1.65604 * 104.44575 * 180.38684 * 12 10 5 16 16 C 1.46499 * 120.00047 * 84.23284 * 15 12 10 17 17 C 1.50701 * 109.47399 * 94.20740 * 16 15 12 18 18 H 1.08004 * 119.99733 * 0.52814 * 17 16 15 19 19 C 1.37869 * 120.00419 * 180.52991 * 17 16 15 20 20 N 1.31506 * 120.00518 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99704 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47112 * 89.99793 * 21 19 17 23 23 H 1.48494 * 109.46916 * 209.99942 * 21 19 17 24 24 H 1.48497 * 109.47212 * 329.99956 * 21 19 17 25 25 C 1.46503 * 119.99860 * 264.22850 * 15 12 10 26 26 C 1.53002 * 109.46885 * 120.00412 * 25 15 12 27 27 C 1.52994 * 109.47154 * 240.00108 * 25 15 12 28 28 H 1.08991 * 109.47419 * 60.00048 * 1 2 3 29 29 H 1.09004 * 109.47129 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46559 * 299.99955 * 1 2 3 31 31 H 1.09003 * 110.48336 * 214.34873 * 7 5 3 32 32 H 1.08993 * 110.48960 * 336.85992 * 7 5 3 33 33 H 1.09001 * 110.75400 * 156.31983 * 8 7 5 34 34 H 1.08995 * 110.75233 * 279.69464 * 8 7 5 35 35 H 1.08997 * 110.46941 * 203.39648 * 9 8 7 36 36 H 1.08999 * 110.58208 * 80.82860 * 9 8 7 37 37 H 1.08999 * 109.47027 * 214.20790 * 16 15 12 38 38 H 1.09000 * 109.47099 * 334.20381 * 16 15 12 39 39 H 0.96998 * 120.00845 * 180.02562 * 20 19 17 40 40 H 1.09000 * 109.47306 * 0.02562 * 25 15 12 41 41 H 1.08996 * 109.47468 * 59.99520 * 26 25 15 42 42 H 1.08996 * 109.47155 * 179.97438 * 26 25 15 43 43 H 1.08995 * 109.47095 * 299.99842 * 26 25 15 44 44 H 1.09002 * 109.47371 * 60.00347 * 27 25 15 45 45 H 1.09003 * 109.47365 * 180.02562 * 27 25 15 46 46 H 1.09007 * 109.47473 * 300.00012 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9661 0.7819 0.8856 7 6 4.1298 0.6110 -1.2741 8 6 4.3371 1.7879 -2.2596 9 6 4.8387 2.9244 -1.3287 10 6 4.0171 2.7457 -0.0353 11 1 3.1473 3.4025 -0.0509 12 16 5.0475 3.1141 1.4114 13 8 4.2716 3.0686 2.6009 14 8 6.2928 2.4354 1.3225 15 7 5.4412 4.7137 1.2416 16 6 4.5171 5.7493 1.7105 17 6 4.8911 6.1594 3.1115 18 1 5.7382 5.7012 3.6004 19 6 4.1519 7.1195 3.7693 20 7 4.4779 7.4771 4.9921 21 14 2.6872 7.9125 2.9235 22 1 1.4619 7.1254 3.2141 23 1 2.5159 9.2990 3.4269 24 1 2.9194 7.9434 1.4571 25 6 6.7137 5.0932 0.6227 26 6 6.4426 5.9384 -0.6235 27 6 7.5433 5.9053 1.6191 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 5.0795 0.1207 -1.0603 32 1 3.4147 -0.1047 -1.6795 33 1 5.0894 1.5374 -3.0075 34 1 3.3958 2.0644 -2.7344 35 1 4.6399 3.8986 -1.7754 36 1 5.9030 2.8099 -1.1234 37 1 4.5762 6.6148 1.0505 38 1 3.4999 5.3577 1.7058 39 1 3.9577 8.1523 5.4551 40 1 7.2623 4.1948 0.3398 41 1 5.8938 6.8367 -0.3410 42 1 7.3893 6.2211 -1.0838 43 1 5.8516 5.3598 -1.3334 44 1 7.7365 5.3032 2.5070 45 1 8.4899 6.1880 1.1585 46 1 6.9946 6.8038 1.9017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234567533.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:26 Heat of formation + Delta-G solvation = -158.030871 kcal Electronic energy + Delta-G solvation = -29320.298534 eV Core-core repulsion = 25337.454746 eV Total energy + Delta-G solvation = -3982.843788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.91811 -38.08032 -37.06135 -36.63080 -36.37366 -35.37474 -32.63768 -30.86559 -30.23786 -29.32421 -27.66493 -27.36842 -26.59434 -23.09244 -22.41377 -21.18182 -20.69431 -19.94383 -18.44083 -17.81189 -17.30515 -17.01524 -16.77737 -16.68490 -16.13593 -15.50461 -15.10931 -14.66219 -14.18743 -13.87922 -13.79379 -13.65686 -13.32149 -13.04991 -12.86199 -12.65212 -12.39957 -12.16649 -12.08255 -11.96189 -11.66043 -11.59657 -11.57888 -11.42252 -11.36162 -11.28922 -11.14659 -11.04814 -10.99539 -10.91219 -10.74754 -10.47867 -10.44821 -10.28909 -10.14385 -9.91667 -9.35159 -8.52100 -8.06448 -6.01325 -3.98251 0.67782 2.00842 2.42994 3.15560 3.31527 3.36247 3.39824 3.89542 4.07080 4.31632 4.43721 4.48963 4.72291 4.77415 4.89589 4.90940 4.97892 4.99304 5.15321 5.24149 5.28480 5.30884 5.33839 5.41274 5.55504 5.60746 5.63773 5.68587 5.79236 5.83348 5.92269 6.01160 6.14717 6.18430 6.24564 6.42820 6.51059 6.73143 6.82970 7.08242 7.26310 7.46161 7.54132 7.64481 8.56669 9.06524 9.58143 11.12050 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012482 B = 0.005215 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.633794 B = 5367.340593 C = 6528.911337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.470 3.530 4 O -0.492 6.492 5 C -0.059 4.059 6 H 0.108 0.892 7 C -0.114 4.114 8 C -0.118 4.118 9 C -0.098 4.098 10 C -0.615 4.615 11 H 0.159 0.841 12 S 2.605 3.395 13 O -0.929 6.929 14 O -0.963 6.963 15 N -0.970 5.970 16 C 0.224 3.776 17 C -0.518 4.518 18 H 0.083 0.917 19 C 0.073 3.927 20 N -0.896 5.896 21 Si 0.864 3.136 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.265 1.265 25 C 0.148 3.852 26 C -0.166 4.166 27 C -0.152 4.152 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.038 0.962 38 H 0.024 0.976 39 H 0.263 0.737 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.046 0.954 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.492 -12.994 -17.172 21.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.312 3.688 4 O -0.378 6.378 5 C -0.079 4.079 6 H 0.125 0.875 7 C -0.152 4.152 8 C -0.156 4.156 9 C -0.136 4.136 10 C -0.720 4.720 11 H 0.176 0.824 12 S 2.695 3.305 13 O -0.919 6.919 14 O -0.954 6.954 15 N -0.808 5.808 16 C 0.101 3.899 17 C -0.557 4.557 18 H 0.101 0.899 19 C -0.129 4.129 20 N -0.535 5.535 21 Si 0.691 3.309 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.190 1.190 25 C 0.041 3.959 26 C -0.225 4.225 27 C -0.211 4.211 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.055 0.945 38 H 0.042 0.958 39 H 0.073 0.927 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.556 -13.131 -16.326 21.009 hybrid contribution -1.639 0.828 -0.659 1.951 sum -3.195 -12.303 -16.985 21.215 Atomic orbital electron populations 1.23325 0.76024 1.03780 1.02890 1.86470 1.23640 1.32959 1.84221 1.23332 0.91621 0.81546 0.72339 1.90672 1.66587 1.36185 1.44340 1.21197 0.88694 0.95003 1.03032 0.87450 1.22444 1.02315 0.98079 0.92324 1.22559 1.01661 0.94144 0.97275 1.22229 0.98800 1.00645 0.91944 1.31641 1.16939 1.02468 1.20950 0.82364 1.05333 0.75159 0.74032 0.75937 1.93660 1.72868 1.85375 1.40010 1.93518 1.40333 1.74164 1.87358 1.57269 1.26639 1.23012 1.73924 1.19454 0.87200 0.86906 0.96346 1.21377 1.15555 1.21528 0.97246 0.89918 1.24836 0.96895 0.96550 0.94652 1.69881 1.40165 1.31825 1.11613 0.87043 0.84290 0.79148 0.80397 1.19963 1.21068 1.18966 1.20737 0.84052 0.98431 0.92650 1.22275 1.01636 1.01315 0.97297 1.22106 0.98072 1.02259 0.98639 0.91829 0.87928 0.91509 0.88951 0.89844 0.90110 0.91132 0.89377 0.89747 0.94452 0.95772 0.92679 0.89429 0.91492 0.92130 0.92873 0.92474 0.93519 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.25 10.28 -39.24 -0.40 -4.65 16 3 C 0.47 6.68 7.18 36.00 0.26 6.94 16 4 O -0.49 -8.37 14.96 -18.75 -0.28 -8.65 16 5 C -0.06 -0.77 3.09 -90.65 -0.28 -1.05 16 6 H 0.11 1.33 7.60 -51.93 -0.39 0.94 16 7 C -0.11 -1.08 6.34 -25.07 -0.16 -1.24 16 8 C -0.12 -1.07 6.94 -24.54 -0.17 -1.24 16 9 C -0.10 -1.10 5.88 -24.88 -0.15 -1.25 16 10 C -0.61 -8.98 3.23 -25.61 -0.08 -9.06 16 11 H 0.16 2.48 6.40 -51.93 -0.33 2.15 16 12 S 2.60 49.70 4.48 -107.50 -0.48 49.22 16 13 O -0.93 -22.24 17.18 -57.54 -0.99 -23.23 16 14 O -0.96 -18.53 15.76 -57.54 -0.91 -19.43 16 15 N -0.97 -19.09 2.63 -108.57 -0.29 -19.38 16 16 C 0.22 5.17 3.62 -5.19 -0.02 5.15 16 17 C -0.52 -14.45 8.08 -34.44 -0.28 -14.73 16 18 H 0.08 2.53 7.38 -52.48 -0.39 2.14 16 19 C 0.07 2.10 5.47 -17.83 -0.10 2.01 16 20 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 21 Si 0.86 21.29 27.46 -169.99 -4.67 16.63 16 22 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.26 -6.03 6.56 56.52 0.37 -5.66 16 25 C 0.15 2.46 3.22 -67.93 -0.22 2.24 16 26 C -0.17 -2.25 9.16 37.16 0.34 -1.90 16 27 C -0.15 -2.75 8.23 37.15 0.31 -2.44 16 28 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.68 7.62 -51.93 -0.40 0.28 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.90 6.69 -51.93 -0.35 0.55 16 36 H 0.08 0.91 7.31 -51.93 -0.38 0.53 16 37 H 0.04 0.81 5.54 -51.93 -0.29 0.53 16 38 H 0.02 0.57 7.20 -51.93 -0.37 0.20 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 40 H 0.09 1.34 6.71 -51.93 -0.35 0.99 16 41 H 0.07 1.00 6.69 -51.93 -0.35 0.65 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.61 6.10 -51.93 -0.32 0.29 16 44 H 0.06 1.14 7.95 -51.93 -0.41 0.72 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.08 1.72 6.70 -51.93 -0.35 1.37 16 LS Contribution 371.76 15.07 5.60 5.60 Total: -1.00 -35.84 371.76 -8.34 -44.17 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -7.22 Total: 1.71 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: 0.52 Total: -15.21 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.49 Total: -46.15 kcal Atomic # 8 Polarization: -53.39 SS G_CDS: -2.58 Total: -55.97 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.63 kcal Atomic # 16 Polarization: 49.70 SS G_CDS: -0.48 Total: 49.22 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.84 -8.34 -44.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234567533.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.860 kcal (2) G-P(sol) polarization free energy of solvation -35.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds