Wall clock time and date at job start Tue Mar 31 2020 16:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34225 * 117.00003 * 2 1 4 4 O 1.20830 * 120.00164 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99961 * 180.02562 * 3 2 1 6 6 H 1.09000 * 110.01479 * 300.05851 * 5 3 2 7 7 C 1.54265 * 110.03103 * 61.45216 * 5 3 2 8 8 C 1.54895 * 104.31360 * 95.60990 * 7 5 3 9 9 C 1.55241 * 102.58884 * 37.92911 * 8 7 5 10 10 C 1.53884 * 110.03151 * 178.61773 * 5 3 2 11 11 H 1.09002 * 110.03150 * 0.04842 * 10 5 3 12 12 S 1.81396 * 110.02915 * 121.42920 * 10 5 3 13 13 O 1.42093 * 110.54763 * 292.01060 * 12 10 5 14 14 O 1.42101 * 110.54214 * 68.76499 * 12 10 5 15 15 N 1.65604 * 104.44575 * 180.38684 * 12 10 5 16 16 C 1.46499 * 120.00047 * 84.23284 * 15 12 10 17 17 C 1.50701 * 109.47399 * 94.20740 * 16 15 12 18 18 H 1.08004 * 119.99733 * 0.52814 * 17 16 15 19 19 C 1.37869 * 120.00419 * 180.52991 * 17 16 15 20 20 N 1.31506 * 120.00518 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99704 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47112 * 89.99793 * 21 19 17 23 23 H 1.48494 * 109.46916 * 209.99942 * 21 19 17 24 24 H 1.48497 * 109.47212 * 329.99956 * 21 19 17 25 25 C 1.46503 * 119.99860 * 264.22850 * 15 12 10 26 26 C 1.53002 * 109.46885 * 120.00412 * 25 15 12 27 27 C 1.52994 * 109.47154 * 240.00108 * 25 15 12 28 28 H 1.08991 * 109.47419 * 60.00048 * 1 2 3 29 29 H 1.09004 * 109.47129 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46559 * 299.99955 * 1 2 3 31 31 H 1.09003 * 110.48336 * 214.34873 * 7 5 3 32 32 H 1.08993 * 110.48960 * 336.85992 * 7 5 3 33 33 H 1.09001 * 110.75400 * 156.31983 * 8 7 5 34 34 H 1.08995 * 110.75233 * 279.69464 * 8 7 5 35 35 H 1.08997 * 110.46941 * 203.39648 * 9 8 7 36 36 H 1.08999 * 110.58208 * 80.82860 * 9 8 7 37 37 H 1.08999 * 109.47027 * 214.20790 * 16 15 12 38 38 H 1.09000 * 109.47099 * 334.20381 * 16 15 12 39 39 H 0.96998 * 120.00845 * 180.02562 * 20 19 17 40 40 H 1.09000 * 109.47306 * 0.02562 * 25 15 12 41 41 H 1.08996 * 109.47468 * 59.99520 * 26 25 15 42 42 H 1.08996 * 109.47155 * 179.97438 * 26 25 15 43 43 H 1.08995 * 109.47095 * 299.99842 * 26 25 15 44 44 H 1.09002 * 109.47371 * 60.00347 * 27 25 15 45 45 H 1.09003 * 109.47365 * 180.02562 * 27 25 15 46 46 H 1.09007 * 109.47473 * 300.00012 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9661 0.7819 0.8856 7 6 4.1298 0.6110 -1.2741 8 6 4.3371 1.7879 -2.2596 9 6 4.8387 2.9244 -1.3287 10 6 4.0171 2.7457 -0.0353 11 1 3.1473 3.4025 -0.0509 12 16 5.0475 3.1141 1.4114 13 8 4.2716 3.0686 2.6009 14 8 6.2928 2.4354 1.3225 15 7 5.4412 4.7137 1.2416 16 6 4.5171 5.7493 1.7105 17 6 4.8911 6.1594 3.1115 18 1 5.7382 5.7012 3.6004 19 6 4.1519 7.1195 3.7693 20 7 4.4779 7.4771 4.9921 21 14 2.6872 7.9125 2.9235 22 1 1.4619 7.1254 3.2141 23 1 2.5159 9.2990 3.4269 24 1 2.9194 7.9434 1.4571 25 6 6.7137 5.0932 0.6227 26 6 6.4426 5.9384 -0.6235 27 6 7.5433 5.9053 1.6191 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 5.0795 0.1207 -1.0603 32 1 3.4147 -0.1047 -1.6795 33 1 5.0894 1.5374 -3.0075 34 1 3.3958 2.0644 -2.7344 35 1 4.6399 3.8986 -1.7754 36 1 5.9030 2.8099 -1.1234 37 1 4.5762 6.6148 1.0505 38 1 3.4999 5.3577 1.7058 39 1 3.9577 8.1523 5.4551 40 1 7.2623 4.1948 0.3398 41 1 5.8938 6.8367 -0.3410 42 1 7.3893 6.2211 -1.0838 43 1 5.8516 5.3598 -1.3334 44 1 7.7365 5.3032 2.5070 45 1 8.4899 6.1880 1.1585 46 1 6.9946 6.8038 1.9017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234567533.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:25 Heat of formation + Delta-G solvation = -184.074122 kcal Electronic energy + Delta-G solvation = -29321.427854 eV Core-core repulsion = 25337.454746 eV Total energy + Delta-G solvation = -3983.973108 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.95423 -39.04034 -38.52074 -38.18932 -37.47517 -36.99484 -34.72441 -32.48071 -31.15648 -30.28875 -29.30661 -28.39322 -27.84944 -24.36286 -24.06489 -22.09491 -21.91341 -21.12282 -19.75610 -19.21881 -19.00794 -18.42620 -18.06330 -17.88673 -17.30179 -17.05805 -16.31113 -15.96716 -15.53265 -15.42532 -14.97560 -14.69958 -14.64655 -14.41010 -14.26750 -13.94481 -13.71864 -13.62578 -13.31127 -13.20438 -13.07589 -13.04959 -13.03429 -12.69737 -12.61703 -12.54082 -12.40272 -12.25879 -12.14955 -12.05400 -11.99967 -11.91205 -11.77508 -11.65062 -11.51135 -11.40979 -11.22926 -10.73608 -9.69614 -8.23946 -6.25330 -0.79640 0.93588 1.33122 1.37648 1.43974 1.47004 1.72240 2.35613 2.78536 2.93114 3.05632 3.10138 3.42871 3.55592 3.79268 3.90959 4.03341 4.10306 4.23243 4.24515 4.27435 4.34221 4.35177 4.39144 4.55637 4.63971 4.65820 4.81336 4.83747 4.89191 4.96368 4.98541 5.04725 5.08452 5.13086 5.16858 5.19019 5.30853 5.36159 5.53713 5.60855 5.70396 5.92988 6.38081 6.50168 6.77280 7.34438 8.93541 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012482 B = 0.005215 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.633794 B = 5367.340593 C = 6528.911337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.353 6.353 3 C 0.471 3.529 4 O -0.527 6.527 5 C -0.073 4.073 6 H 0.107 0.893 7 C -0.110 4.110 8 C -0.111 4.111 9 C -0.104 4.104 10 C -0.584 4.584 11 H 0.151 0.849 12 S 2.595 3.405 13 O -0.996 6.996 14 O -0.974 6.974 15 N -0.978 5.978 16 C 0.233 3.767 17 C -0.517 4.517 18 H 0.034 0.966 19 C 0.006 3.994 20 N -0.950 5.950 21 Si 0.929 3.071 22 H -0.279 1.279 23 H -0.279 1.279 24 H -0.227 1.227 25 C 0.138 3.862 26 C -0.160 4.160 27 C -0.151 4.151 28 H 0.069 0.931 29 H 0.140 0.860 30 H 0.054 0.946 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.022 0.978 39 H 0.264 0.736 40 H 0.105 0.895 41 H 0.051 0.949 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.020 0.980 45 H 0.083 0.917 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.020 -14.009 -21.998 26.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.269 6.269 3 C 0.314 3.686 4 O -0.416 6.416 5 C -0.094 4.094 6 H 0.125 0.875 7 C -0.148 4.148 8 C -0.149 4.149 9 C -0.142 4.142 10 C -0.695 4.695 11 H 0.169 0.831 12 S 2.693 3.307 13 O -0.986 6.986 14 O -0.964 6.964 15 N -0.816 5.816 16 C 0.108 3.892 17 C -0.556 4.556 18 H 0.053 0.947 19 C -0.190 4.190 20 N -0.592 5.592 21 Si 0.752 3.248 22 H -0.205 1.205 23 H -0.205 1.205 24 H -0.149 1.149 25 C 0.033 3.967 26 C -0.218 4.218 27 C -0.209 4.209 28 H 0.088 0.912 29 H 0.158 0.842 30 H 0.073 0.927 31 H 0.127 0.873 32 H 0.119 0.881 33 H 0.131 0.869 34 H 0.091 0.909 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.040 0.960 39 H 0.073 0.927 40 H 0.123 0.877 41 H 0.070 0.930 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.040 0.960 45 H 0.102 0.898 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.020 -14.157 -21.130 25.515 hybrid contribution -1.419 0.967 0.876 1.927 sum -3.438 -13.190 -20.254 24.414 Atomic orbital electron populations 1.23660 0.74335 1.06186 1.02668 1.86464 1.25273 1.31619 1.83548 1.23538 0.92010 0.81662 0.71408 1.90657 1.67392 1.37340 1.46225 1.21464 0.88481 0.94139 1.05344 0.87518 1.22578 1.03342 0.98551 0.90302 1.22603 1.02714 0.92451 0.97118 1.22477 0.98648 1.02828 0.90251 1.31252 1.15526 1.03758 1.18982 0.83094 1.05284 0.75128 0.73754 0.76570 1.93579 1.73919 1.86061 1.45090 1.93488 1.41010 1.73988 1.87909 1.57156 1.27532 1.22322 1.74576 1.19176 0.87638 0.88537 0.93824 1.21654 1.13740 1.20625 0.99595 0.94745 1.25801 1.00377 0.97518 0.95348 1.70059 1.42142 1.33202 1.13767 0.85990 0.79463 0.77879 0.81433 1.20466 1.20454 1.14943 1.21063 0.82669 0.99589 0.93345 1.22240 1.03548 1.00205 0.95853 1.22078 1.00009 1.00571 0.98283 0.91203 0.84236 0.92666 0.87295 0.88090 0.86937 0.90859 0.87691 0.88878 0.92066 0.96035 0.92697 0.87682 0.92956 0.89188 0.90256 0.96039 0.89805 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.56 113.37 1.20 1.59 16 2 O -0.35 -7.76 10.28 -51.37 -0.53 -8.29 16 3 C 0.47 12.76 7.18 71.23 0.51 13.27 16 4 O -0.53 -17.58 14.96 21.95 0.33 -17.25 16 5 C -0.07 -1.79 3.09 -10.81 -0.03 -1.82 16 6 H 0.11 2.60 7.60 -2.39 -0.02 2.58 16 7 C -0.11 -1.66 6.34 31.67 0.20 -1.46 16 8 C -0.11 -1.46 6.94 32.01 0.22 -1.24 16 9 C -0.10 -1.92 5.88 31.79 0.19 -1.73 16 10 C -0.58 -16.08 3.23 31.32 0.10 -15.98 16 11 H 0.15 4.56 6.40 -2.39 -0.02 4.54 16 12 S 2.59 100.47 4.48 -56.49 -0.25 100.22 16 13 O -1.00 -50.51 17.18 -127.65 -2.19 -52.70 16 14 O -0.97 -37.53 15.76 -127.65 -2.01 -39.54 16 15 N -0.98 -38.65 2.63 -497.41 -1.31 -39.95 16 16 C 0.23 10.84 3.62 85.63 0.31 11.15 16 17 C -0.52 -30.30 8.08 25.60 0.21 -30.09 16 18 H 0.03 2.28 7.38 -2.91 -0.02 2.26 16 19 C 0.01 0.38 5.47 84.65 0.46 0.85 16 20 N -0.95 -61.55 13.96 21.44 0.30 -61.25 16 21 Si 0.93 44.35 27.46 68.60 1.88 46.24 16 22 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.23 -9.35 6.56 99.48 0.65 -8.70 16 25 C 0.14 4.45 3.22 44.99 0.14 4.59 16 26 C -0.16 -3.74 9.16 71.98 0.66 -3.08 16 27 C -0.15 -5.56 8.23 71.98 0.59 -4.97 16 28 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 29 H 0.14 1.18 8.14 -2.39 -0.02 1.17 16 30 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.10 1.21 7.62 -2.39 -0.02 1.19 16 33 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.10 1.63 6.69 -2.39 -0.02 1.61 16 36 H 0.09 1.61 7.31 -2.39 -0.02 1.59 16 37 H 0.06 2.57 5.54 -2.39 -0.01 2.56 16 38 H 0.02 1.02 7.20 -2.39 -0.02 1.01 16 39 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 40 H 0.11 3.00 6.71 -2.39 -0.02 2.99 16 41 H 0.05 1.39 6.69 -2.39 -0.02 1.38 16 42 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.08 1.44 6.10 -2.39 -0.01 1.43 16 44 H 0.02 0.89 7.95 -2.39 -0.02 0.87 16 45 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.05 2.28 6.70 -2.38 -0.02 2.27 16 Total: -1.00 -85.33 371.76 1.90 -83.43 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.92 Total: 18.03 kcal Atomic # 6 Polarization: -33.68 SS G_CDS: 4.76 Total: -28.92 kcal Atomic # 7 Polarization: -100.20 SS G_CDS: -1.01 Total: -101.21 kcal Atomic # 8 Polarization: -113.38 SS G_CDS: -4.41 Total: -117.79 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.88 Total: 46.24 kcal Atomic # 16 Polarization: 100.47 SS G_CDS: -0.25 Total: 100.22 kcal Total: -85.33 1.90 -83.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234567533.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.641 kcal (2) G-P(sol) polarization free energy of solvation -85.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds