Wall clock time and date at job start Tue Mar 31 2020 16:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00325 * 2 1 4 4 O 1.20820 * 119.99835 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99977 * 180.02562 * 3 2 1 6 6 H 1.09002 * 110.43639 * 59.29807 * 5 3 2 7 7 C 1.54268 * 110.48600 * 296.75847 * 5 3 2 8 8 C 1.53873 * 106.59703 * 217.58396 * 7 5 3 9 9 C 1.54265 * 106.59997 * 359.97438 * 8 7 5 10 10 C 1.54888 * 104.19721 * 23.61451 * 9 8 7 11 11 H 1.09000 * 110.75534 * 80.36765 * 10 9 8 12 12 S 1.81397 * 110.76038 * 203.74287 * 10 9 8 13 13 O 1.42102 * 110.54186 * 49.94743 * 12 10 9 14 14 O 1.42100 * 110.54385 * 186.70808 * 12 10 9 15 15 N 1.65600 * 104.44722 * 298.32567 * 12 10 9 16 16 C 1.46500 * 119.99909 * 89.99870 * 15 12 10 17 17 C 1.50701 * 109.47251 * 94.99869 * 16 15 12 18 18 H 1.08004 * 119.99613 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00253 * 180.02562 * 17 16 15 20 20 N 1.31510 * 119.99609 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00027 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46892 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47020 * 119.99610 * 21 19 17 24 24 H 1.48495 * 109.47042 * 240.00195 * 21 19 17 25 25 C 1.46498 * 120.00371 * 270.00176 * 15 12 10 26 26 C 1.52996 * 109.47552 * 120.00161 * 25 15 12 27 27 C 1.53005 * 109.47328 * 240.00037 * 25 15 12 28 28 H 1.09000 * 109.47248 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47025 * 299.99723 * 1 2 3 30 30 H 1.08997 * 109.47022 * 60.00120 * 1 2 3 31 31 H 1.09002 * 110.02813 * 336.86280 * 7 5 3 32 32 H 1.08996 * 110.03417 * 98.24671 * 7 5 3 33 33 H 1.08993 * 110.03875 * 119.28743 * 8 7 5 34 34 H 1.09005 * 110.03120 * 240.71705 * 8 7 5 35 35 H 1.09007 * 110.48635 * 142.29223 * 9 8 7 36 36 H 1.08998 * 110.48903 * 264.80414 * 9 8 7 37 37 H 1.09005 * 109.47625 * 215.00096 * 16 15 12 38 38 H 1.09004 * 109.47492 * 334.99949 * 16 15 12 39 39 H 0.97005 * 119.99215 * 180.02562 * 20 19 17 40 40 H 1.09000 * 109.47107 * 359.97438 * 25 15 12 41 41 H 1.08998 * 109.47567 * 59.99924 * 26 25 15 42 42 H 1.08994 * 109.47518 * 180.02562 * 26 25 15 43 43 H 1.09012 * 109.46901 * 299.99903 * 26 25 15 44 44 H 1.09001 * 109.46915 * 59.99496 * 27 25 15 45 45 H 1.08994 * 109.47098 * 179.97438 * 27 25 15 46 46 H 1.09000 * 109.46972 * 300.00016 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9734 0.7740 -0.8791 7 6 4.1401 0.6529 1.2894 8 6 5.3451 1.5188 1.6965 9 6 5.4621 2.6362 0.6394 10 6 4.0353 2.7499 0.0474 11 1 3.3916 3.3384 0.7012 12 16 4.0858 3.4632 -1.6197 13 8 5.0424 2.7860 -2.4230 14 8 2.7701 3.7086 -2.0972 15 7 4.7299 4.9734 -1.4035 16 6 6.1801 5.1683 -1.4750 17 6 6.5612 5.5982 -2.8683 18 1 5.7992 5.7150 -3.6247 19 6 7.8825 5.8424 -3.1773 20 7 8.8102 5.7007 -2.2560 21 14 8.3547 6.3760 -4.9041 22 1 7.1347 6.4624 -5.7464 23 1 9.0126 7.7061 -4.8487 24 1 9.2918 5.3841 -5.4898 25 6 3.8496 6.1146 -1.1408 26 6 4.2066 6.7333 0.2122 27 6 4.0280 7.1608 -2.2429 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.3871 0.6669 2.0774 32 1 4.4622 -0.3708 1.0992 33 1 5.1771 1.9529 2.6821 34 1 6.2530 0.9156 1.7036 35 1 5.7567 3.5753 1.1079 36 1 6.1770 2.3562 -0.1343 37 1 6.4790 5.9376 -0.7629 38 1 6.6849 4.2331 -1.2326 39 1 9.7398 5.8729 -2.4734 40 1 2.8131 5.7777 -1.1245 41 1 5.2430 7.0703 0.1956 42 1 3.5513 7.5820 0.4079 43 1 4.0794 5.9879 0.9974 44 1 3.7737 6.7200 -3.2068 45 1 3.3727 8.0096 -2.0476 46 1 5.0645 7.4978 -2.2596 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234603487.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:29 Heat of formation + Delta-G solvation = -163.292333 kcal Electronic energy + Delta-G solvation = -29308.255162 eV Core-core repulsion = 25325.183220 eV Total energy + Delta-G solvation = -3983.071942 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.78457 -37.97801 -36.87503 -36.58747 -36.23516 -35.22101 -32.71476 -30.68431 -30.07112 -29.19829 -27.53379 -26.90645 -26.46565 -22.99544 -22.70393 -20.84373 -20.64382 -19.98088 -18.25555 -17.78043 -17.13461 -16.99563 -16.75010 -16.37694 -16.00455 -15.30724 -14.70489 -14.44476 -14.08825 -13.81736 -13.69895 -13.55276 -13.40362 -13.11435 -12.81766 -12.41630 -12.26639 -12.23364 -12.07238 -11.70476 -11.55624 -11.44464 -11.35562 -11.31420 -11.19268 -11.10627 -10.97822 -10.94292 -10.86116 -10.72581 -10.70746 -10.42680 -10.37619 -10.29227 -10.06010 -9.75403 -9.46735 -8.38025 -7.96533 -6.01154 -4.01680 0.85280 2.05395 2.47141 3.29318 3.34030 3.42032 3.48423 3.97143 4.25864 4.43078 4.49370 4.63671 4.74913 4.87197 4.93379 5.02021 5.13013 5.13247 5.28934 5.31671 5.34261 5.35224 5.41959 5.52471 5.71683 5.73324 5.79458 5.84464 5.93557 6.04182 6.09264 6.19028 6.23312 6.24173 6.32878 6.53702 6.61403 6.84688 7.20623 7.30779 7.48601 7.58156 7.71043 7.97983 8.28950 9.00364 9.61609 11.07564 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.004307 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.030133 B = 6499.291939 C = 6836.083030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.357 6.357 3 C 0.456 3.544 4 O -0.481 6.481 5 C -0.068 4.068 6 H 0.121 0.879 7 C -0.101 4.101 8 C -0.117 4.117 9 C -0.100 4.100 10 C -0.599 4.599 11 H 0.145 0.855 12 S 2.602 3.398 13 O -0.935 6.935 14 O -0.961 6.961 15 N -0.976 5.976 16 C 0.254 3.746 17 C -0.515 4.515 18 H 0.063 0.937 19 C 0.061 3.939 20 N -0.898 5.898 21 Si 0.891 3.109 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.148 3.852 26 C -0.161 4.161 27 C -0.151 4.151 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.038 0.962 38 H 0.039 0.961 39 H 0.261 0.739 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.048 0.952 44 H 0.053 0.947 45 H 0.045 0.955 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.141 -8.813 10.499 17.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.274 6.274 3 C 0.297 3.703 4 O -0.367 6.367 5 C -0.089 4.089 6 H 0.139 0.861 7 C -0.139 4.139 8 C -0.155 4.155 9 C -0.138 4.138 10 C -0.704 4.704 11 H 0.163 0.837 12 S 2.693 3.307 13 O -0.926 6.926 14 O -0.951 6.951 15 N -0.815 5.815 16 C 0.133 3.867 17 C -0.555 4.555 18 H 0.081 0.919 19 C -0.141 4.141 20 N -0.538 5.538 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.210 1.210 25 C 0.042 3.958 26 C -0.220 4.220 27 C -0.210 4.210 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.462 -8.884 9.735 17.466 hybrid contribution 0.171 0.392 -0.247 0.493 sum -11.291 -8.492 9.488 17.019 Atomic orbital electron populations 1.23312 0.76202 1.03687 1.02879 1.86484 1.23524 1.33066 1.84276 1.23560 0.91673 0.81821 0.73241 1.90752 1.66633 1.35904 1.43370 1.21624 0.87701 0.95642 1.03904 0.86134 1.22043 0.97904 0.99896 0.94045 1.22101 0.97801 0.96566 0.99004 1.22194 0.91487 1.00749 0.99366 1.31905 1.05640 1.04008 1.28895 0.83719 1.05288 0.73991 0.74841 0.76561 1.93627 1.61315 1.74763 1.62857 1.93549 1.39873 1.84128 1.77511 1.57513 1.17014 1.20400 1.86603 1.19093 0.71924 0.97964 0.97765 1.21570 0.92640 1.44825 0.96419 0.91901 1.24894 0.96345 0.95707 0.97135 1.69921 1.00895 1.49884 1.33089 0.86537 0.78605 0.78014 0.84886 1.19686 1.21134 1.20963 1.20658 0.92930 0.87437 0.94811 1.22180 1.02991 1.00248 0.96597 1.22109 1.03624 0.97135 0.98163 0.88016 0.91853 0.91516 0.91073 0.89822 0.91146 0.90532 0.89069 0.88982 0.94377 0.94360 0.92941 0.89983 0.91158 0.92458 0.93298 0.92760 0.93623 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.36 10.56 -39.24 -0.41 -4.77 16 3 C 0.46 6.60 7.12 36.01 0.26 6.85 16 4 O -0.48 -8.25 14.92 -20.62 -0.31 -8.56 16 5 C -0.07 -0.92 2.81 -90.12 -0.25 -1.17 16 6 H 0.12 1.54 8.04 -51.93 -0.42 1.13 16 7 C -0.10 -1.02 6.36 -25.61 -0.16 -1.19 16 8 C -0.12 -1.20 6.80 -25.61 -0.17 -1.38 16 9 C -0.10 -1.36 5.65 -25.07 -0.14 -1.50 16 10 C -0.60 -9.01 2.66 -24.75 -0.07 -9.08 16 11 H 0.14 2.04 7.50 -51.93 -0.39 1.65 16 12 S 2.60 52.27 4.87 -107.50 -0.52 51.75 16 13 O -0.94 -21.85 16.55 -57.54 -0.95 -22.80 16 14 O -0.96 -21.21 15.99 -59.86 -0.96 -22.17 16 15 N -0.98 -20.00 2.63 -108.57 -0.29 -20.29 16 16 C 0.25 6.03 4.49 -5.19 -0.02 6.01 16 17 C -0.51 -13.96 7.53 -34.44 -0.26 -14.22 16 18 H 0.06 1.74 7.07 -52.48 -0.37 1.37 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.90 -25.43 13.29 55.43 0.74 -24.69 16 21 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 C 0.15 2.69 3.19 -67.93 -0.22 2.48 16 26 C -0.16 -2.44 9.16 37.16 0.34 -2.10 16 27 C -0.15 -2.82 8.21 37.16 0.30 -2.51 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 30 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 31 H 0.07 0.66 7.83 -51.93 -0.41 0.26 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.19 8.14 -51.92 -0.42 0.77 16 36 H 0.09 1.40 7.17 -51.93 -0.37 1.02 16 37 H 0.04 0.91 6.45 -51.93 -0.33 0.58 16 38 H 0.04 0.95 6.56 -51.93 -0.34 0.61 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.08 1.45 6.87 -51.93 -0.36 1.10 16 41 H 0.07 1.15 6.69 -51.93 -0.35 0.80 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 44 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.08 1.71 6.65 -51.93 -0.35 1.37 16 LS Contribution 378.14 15.07 5.70 5.70 Total: -1.00 -34.07 378.14 -8.91 -42.98 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.46 Total: 1.04 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 0.57 Total: -14.85 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.45 Total: -44.98 kcal Atomic # 8 Polarization: -55.67 SS G_CDS: -2.63 Total: -58.30 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 52.27 SS G_CDS: -0.52 Total: 51.75 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.07 -8.91 -42.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234603487.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.315 kcal (2) G-P(sol) polarization free energy of solvation -34.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds