Wall clock time and date at job start Tue Mar 31 2020 16:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00325 * 2 1 4 4 O 1.20820 * 119.99835 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99977 * 180.02562 * 3 2 1 6 6 H 1.09002 * 110.43639 * 59.29807 * 5 3 2 7 7 C 1.54268 * 110.48600 * 296.75847 * 5 3 2 8 8 C 1.53873 * 106.59703 * 217.58396 * 7 5 3 9 9 C 1.54265 * 106.59997 * 359.97438 * 8 7 5 10 10 C 1.54888 * 104.19721 * 23.61451 * 9 8 7 11 11 H 1.09000 * 110.75534 * 80.36765 * 10 9 8 12 12 S 1.81397 * 110.76038 * 203.74287 * 10 9 8 13 13 O 1.42102 * 110.54186 * 49.94743 * 12 10 9 14 14 O 1.42100 * 110.54385 * 186.70808 * 12 10 9 15 15 N 1.65600 * 104.44722 * 298.32567 * 12 10 9 16 16 C 1.46500 * 119.99909 * 89.99870 * 15 12 10 17 17 C 1.50701 * 109.47251 * 94.99869 * 16 15 12 18 18 H 1.08004 * 119.99613 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00253 * 180.02562 * 17 16 15 20 20 N 1.31510 * 119.99609 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00027 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46892 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47020 * 119.99610 * 21 19 17 24 24 H 1.48495 * 109.47042 * 240.00195 * 21 19 17 25 25 C 1.46498 * 120.00371 * 270.00176 * 15 12 10 26 26 C 1.52996 * 109.47552 * 120.00161 * 25 15 12 27 27 C 1.53005 * 109.47328 * 240.00037 * 25 15 12 28 28 H 1.09000 * 109.47248 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47025 * 299.99723 * 1 2 3 30 30 H 1.08997 * 109.47022 * 60.00120 * 1 2 3 31 31 H 1.09002 * 110.02813 * 336.86280 * 7 5 3 32 32 H 1.08996 * 110.03417 * 98.24671 * 7 5 3 33 33 H 1.08993 * 110.03875 * 119.28743 * 8 7 5 34 34 H 1.09005 * 110.03120 * 240.71705 * 8 7 5 35 35 H 1.09007 * 110.48635 * 142.29223 * 9 8 7 36 36 H 1.08998 * 110.48903 * 264.80414 * 9 8 7 37 37 H 1.09005 * 109.47625 * 215.00096 * 16 15 12 38 38 H 1.09004 * 109.47492 * 334.99949 * 16 15 12 39 39 H 0.97005 * 119.99215 * 180.02562 * 20 19 17 40 40 H 1.09000 * 109.47107 * 359.97438 * 25 15 12 41 41 H 1.08998 * 109.47567 * 59.99924 * 26 25 15 42 42 H 1.08994 * 109.47518 * 180.02562 * 26 25 15 43 43 H 1.09012 * 109.46901 * 299.99903 * 26 25 15 44 44 H 1.09001 * 109.46915 * 59.99496 * 27 25 15 45 45 H 1.08994 * 109.47098 * 179.97438 * 27 25 15 46 46 H 1.09000 * 109.46972 * 300.00016 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9734 0.7740 -0.8791 7 6 4.1401 0.6529 1.2894 8 6 5.3451 1.5188 1.6965 9 6 5.4621 2.6362 0.6394 10 6 4.0353 2.7499 0.0474 11 1 3.3916 3.3384 0.7012 12 16 4.0858 3.4632 -1.6197 13 8 5.0424 2.7860 -2.4230 14 8 2.7701 3.7086 -2.0972 15 7 4.7299 4.9734 -1.4035 16 6 6.1801 5.1683 -1.4750 17 6 6.5612 5.5982 -2.8683 18 1 5.7992 5.7150 -3.6247 19 6 7.8825 5.8424 -3.1773 20 7 8.8102 5.7007 -2.2560 21 14 8.3547 6.3760 -4.9041 22 1 7.1347 6.4624 -5.7464 23 1 9.0126 7.7061 -4.8487 24 1 9.2918 5.3841 -5.4898 25 6 3.8496 6.1146 -1.1408 26 6 4.2066 6.7333 0.2122 27 6 4.0280 7.1608 -2.2429 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.3871 0.6669 2.0774 32 1 4.4622 -0.3708 1.0992 33 1 5.1771 1.9529 2.6821 34 1 6.2530 0.9156 1.7036 35 1 5.7567 3.5753 1.1079 36 1 6.1770 2.3562 -0.1343 37 1 6.4790 5.9376 -0.7629 38 1 6.6849 4.2331 -1.2326 39 1 9.7398 5.8729 -2.4734 40 1 2.8131 5.7777 -1.1245 41 1 5.2430 7.0703 0.1956 42 1 3.5513 7.5820 0.4079 43 1 4.0794 5.9879 0.9974 44 1 3.7737 6.7200 -3.2068 45 1 3.3727 8.0096 -2.0476 46 1 5.0645 7.4978 -2.2596 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234603487.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:28 Heat of formation + Delta-G solvation = -185.866769 kcal Electronic energy + Delta-G solvation = -29309.234063 eV Core-core repulsion = 25325.183220 eV Total energy + Delta-G solvation = -3984.050843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.85263 -39.00721 -38.46077 -38.12014 -37.44844 -36.91701 -34.74495 -32.27328 -31.12008 -30.25040 -28.80723 -28.33410 -27.87020 -24.75281 -23.94335 -22.02659 -21.80752 -21.20309 -19.69350 -19.11527 -18.62797 -18.41052 -18.04290 -17.94174 -17.24045 -16.93701 -16.36914 -15.62553 -15.38562 -15.18348 -14.99282 -14.74541 -14.71629 -14.38084 -14.10193 -13.96842 -13.69636 -13.51971 -13.36101 -13.13724 -13.07414 -12.96053 -12.92697 -12.73993 -12.59968 -12.52222 -12.35677 -12.27386 -12.21277 -12.12883 -12.05540 -11.87033 -11.71575 -11.57038 -11.47189 -11.31032 -11.25208 -10.49025 -9.67011 -8.12621 -6.18584 -0.69518 0.95782 1.37906 1.41051 1.49166 1.51813 1.76731 2.44993 2.75477 3.01247 3.12120 3.19242 3.45178 3.60190 3.81350 3.93541 4.07371 4.19969 4.26365 4.26897 4.29712 4.30456 4.34357 4.38984 4.56246 4.63238 4.67862 4.83433 4.90837 4.94376 4.96221 5.06596 5.11760 5.17156 5.18543 5.21538 5.28699 5.35738 5.45192 5.58798 5.71008 5.84880 6.05919 6.24628 6.52155 6.87045 7.46751 8.94833 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.004307 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.030133 B = 6499.291939 C = 6836.083030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.354 6.354 3 C 0.456 3.544 4 O -0.515 6.515 5 C -0.079 4.079 6 H 0.122 0.878 7 C -0.093 4.093 8 C -0.109 4.109 9 C -0.106 4.106 10 C -0.567 4.567 11 H 0.162 0.838 12 S 2.590 3.410 13 O -0.982 6.982 14 O -0.990 6.990 15 N -0.983 5.983 16 C 0.272 3.728 17 C -0.528 4.528 18 H 0.045 0.955 19 C 0.016 3.984 20 N -0.921 5.921 21 Si 0.942 3.058 22 H -0.277 1.277 23 H -0.272 1.272 24 H -0.281 1.281 25 C 0.138 3.862 26 C -0.153 4.153 27 C -0.149 4.149 28 H 0.139 0.861 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.037 0.963 38 H 0.026 0.974 39 H 0.264 0.736 40 H 0.087 0.913 41 H 0.054 0.946 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.028 0.972 45 H 0.080 0.920 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.825 -9.756 12.775 19.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.270 6.270 3 C 0.299 3.701 4 O -0.403 6.403 5 C -0.100 4.100 6 H 0.140 0.860 7 C -0.131 4.131 8 C -0.147 4.147 9 C -0.144 4.144 10 C -0.679 4.679 11 H 0.179 0.821 12 S 2.688 3.312 13 O -0.973 6.973 14 O -0.981 6.981 15 N -0.821 5.821 16 C 0.149 3.851 17 C -0.568 4.568 18 H 0.064 0.936 19 C -0.183 4.183 20 N -0.562 5.562 21 Si 0.768 3.232 22 H -0.202 1.202 23 H -0.197 1.197 24 H -0.207 1.207 25 C 0.032 3.968 26 C -0.212 4.212 27 C -0.208 4.208 28 H 0.157 0.843 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.126 0.874 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.055 0.945 38 H 0.043 0.957 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.073 0.927 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.047 0.953 45 H 0.098 0.902 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.155 -9.801 11.948 19.661 hybrid contribution 0.264 0.603 -0.936 1.144 sum -11.891 -9.198 11.013 18.635 Atomic orbital electron populations 1.23661 0.74426 1.06143 1.02719 1.86475 1.25229 1.31672 1.83593 1.23724 0.91990 0.81991 0.72387 1.90740 1.67377 1.37016 1.45168 1.21842 0.87647 0.94325 1.06181 0.86010 1.22123 0.97957 1.00774 0.92275 1.22129 0.98696 0.95412 0.98500 1.22298 0.89541 1.02687 0.99874 1.31487 1.07617 1.05251 1.23580 0.82072 1.05265 0.72815 0.74622 0.78460 1.93563 1.62192 1.75410 1.66116 1.93502 1.40520 1.84478 1.79581 1.57350 1.15777 1.21606 1.87362 1.18670 0.73721 0.96888 0.95828 1.21832 0.92513 1.44687 0.97737 0.93640 1.25537 0.96470 0.96012 1.00261 1.69983 1.01148 1.50662 1.34395 0.85753 0.78043 0.78234 0.81161 1.20187 1.19699 1.20695 1.20926 0.92782 0.86726 0.96351 1.22110 1.02552 1.01517 0.94989 1.22075 1.02846 0.98490 0.97390 0.84287 0.91209 0.92574 0.89492 0.87423 0.89034 0.88920 0.88554 0.91133 0.94502 0.95657 0.92657 0.89479 0.92694 0.89684 0.91454 0.95251 0.90152 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.56 113.37 1.20 1.58 16 2 O -0.35 -7.91 10.56 -51.35 -0.54 -8.45 16 3 C 0.46 12.55 7.12 71.24 0.51 13.05 16 4 O -0.51 -17.23 14.92 23.77 0.35 -16.88 16 5 C -0.08 -1.99 2.81 -10.47 -0.03 -2.02 16 6 H 0.12 3.05 8.04 -2.39 -0.02 3.03 16 7 C -0.09 -1.55 6.36 31.32 0.20 -1.35 16 8 C -0.11 -1.87 6.80 31.32 0.21 -1.65 16 9 C -0.11 -2.72 5.65 31.67 0.18 -2.54 16 10 C -0.57 -16.52 2.66 31.88 0.08 -16.44 16 11 H 0.16 4.25 7.50 -2.39 -0.02 4.23 16 12 S 2.59 107.17 4.87 -56.49 -0.28 106.89 16 13 O -0.98 -48.19 16.55 -127.65 -2.11 -50.30 16 14 O -0.99 -45.23 15.99 -125.43 -2.01 -47.24 16 15 N -0.98 -41.33 2.63 -497.40 -1.31 -42.64 16 16 C 0.27 13.32 4.49 85.63 0.38 13.71 16 17 C -0.53 -29.66 7.53 25.60 0.19 -29.47 16 18 H 0.05 2.65 7.07 -2.91 -0.02 2.63 16 19 C 0.02 0.91 5.46 84.66 0.46 1.37 16 20 N -0.92 -52.89 13.29 21.45 0.28 -52.60 16 21 Si 0.94 45.25 29.54 68.60 2.03 47.28 16 22 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 25 C 0.14 5.01 3.19 44.99 0.14 5.16 16 26 C -0.15 -4.40 9.16 71.98 0.66 -3.74 16 27 C -0.15 -5.65 8.21 71.98 0.59 -5.06 16 28 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 30 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 31 H 0.09 1.23 7.83 -2.39 -0.02 1.21 16 32 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 36 H 0.07 2.15 7.17 -2.39 -0.02 2.14 16 37 H 0.04 1.81 6.45 -2.38 -0.02 1.79 16 38 H 0.03 1.31 6.56 -2.39 -0.02 1.29 16 39 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 40 H 0.09 3.08 6.87 -2.39 -0.02 3.06 16 41 H 0.05 1.76 6.69 -2.39 -0.02 1.74 16 42 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 44 H 0.03 1.21 7.93 -2.39 -0.02 1.19 16 45 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.06 2.56 6.65 -2.39 -0.02 2.54 16 Total: -1.00 -76.62 378.14 2.17 -74.45 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.96 Total: 16.91 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: 4.78 Total: -27.41 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -1.02 Total: -95.24 kcal Atomic # 8 Polarization: -118.56 SS G_CDS: -4.31 Total: -122.87 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 16 Polarization: 107.17 SS G_CDS: -0.28 Total: 106.89 kcal Total: -76.62 2.17 -74.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234603487.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.415 kcal (2) G-P(sol) polarization free energy of solvation -76.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds