Wall clock time and date at job start Tue Mar 31 2020 16:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34226 * 117.00291 * 2 1 4 4 O 1.20826 * 119.99795 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00128 * 179.97438 * 3 2 1 6 6 H 1.08994 * 110.05807 * 30.60274 * 5 3 2 7 7 C 1.54262 * 110.03070 * 152.01964 * 5 3 2 8 8 C 1.54895 * 104.19773 * 142.89637 * 7 5 3 9 9 C 1.54894 * 102.74562 * 322.05543 * 8 7 5 10 10 C 1.53879 * 110.03272 * 269.18675 * 5 3 2 11 11 H 1.08994 * 110.07245 * 121.40799 * 10 5 3 12 12 S 1.81396 * 110.03232 * 359.97438 * 10 5 3 13 13 O 1.42102 * 110.53968 * 69.70083 * 12 10 5 14 14 O 1.42098 * 110.54674 * 292.94886 * 12 10 5 15 15 N 1.65599 * 104.44853 * 181.32374 * 12 10 5 16 16 C 1.46501 * 120.00006 * 90.00414 * 15 12 10 17 17 C 1.50704 * 109.47320 * 94.99575 * 16 15 12 18 18 H 1.08005 * 119.99918 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00321 * 180.27239 * 17 16 15 20 20 N 1.31523 * 119.99598 * 359.73326 * 19 17 16 21 21 Si 1.86792 * 120.00155 * 179.72607 * 19 17 16 22 22 H 1.48496 * 109.47250 * 60.00792 * 21 19 17 23 23 H 1.48502 * 109.46969 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47293 * 300.00528 * 21 19 17 25 25 C 1.46504 * 120.00302 * 270.00149 * 15 12 10 26 26 C 1.52995 * 109.46892 * 120.00012 * 25 15 12 27 27 C 1.53002 * 109.47233 * 240.00157 * 25 15 12 28 28 H 1.08999 * 109.47062 * 299.99866 * 1 2 3 29 29 H 1.08997 * 109.47109 * 59.99876 * 1 2 3 30 30 H 1.09006 * 109.46898 * 179.97438 * 1 2 3 31 31 H 1.09007 * 110.49009 * 24.21881 * 7 5 3 32 32 H 1.09001 * 110.59762 * 261.62651 * 7 5 3 33 33 H 1.09004 * 110.75849 * 203.74788 * 8 7 5 34 34 H 1.08990 * 110.91528 * 80.44092 * 8 7 5 35 35 H 1.09002 * 110.48701 * 279.26454 * 9 8 7 36 36 H 1.08998 * 110.48819 * 156.61868 * 9 8 7 37 37 H 1.08999 * 109.46950 * 334.99831 * 16 15 12 38 38 H 1.09002 * 109.47151 * 215.00063 * 16 15 12 39 39 H 0.96998 * 119.99365 * 179.97438 * 20 19 17 40 40 H 1.08997 * 109.46728 * 359.97438 * 25 15 12 41 41 H 1.08997 * 109.47521 * 60.00379 * 26 25 15 42 42 H 1.09007 * 109.47086 * 180.02562 * 26 25 15 43 43 H 1.09003 * 109.47601 * 299.99871 * 26 25 15 44 44 H 1.09008 * 109.47007 * 59.99704 * 27 25 15 45 45 H 1.08998 * 109.46937 * 179.97438 * 27 25 15 46 46 H 1.08996 * 109.46847 * 300.00053 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9859 0.4142 -0.5203 7 6 4.0273 2.5804 -0.6795 8 6 5.2608 3.0237 0.1459 9 6 4.8527 2.6565 1.5943 10 6 4.0911 1.3231 1.4463 11 1 4.7651 0.4860 1.6278 12 16 2.7034 1.2680 2.6132 13 8 2.0903 -0.0139 2.5987 14 8 1.9252 2.4533 2.5191 15 7 3.4144 1.3639 4.1057 16 6 3.6443 2.6715 4.7250 17 6 2.4984 2.9988 5.6475 18 1 1.6809 2.3023 5.7615 19 6 2.4912 4.1898 6.3422 20 7 3.4869 5.0378 6.2037 21 14 1.0672 4.5989 7.4798 22 1 0.9681 3.5644 8.5405 23 1 1.2973 5.9270 8.1030 24 1 -0.1961 4.6307 6.6998 25 6 3.8137 0.1410 4.8068 26 6 5.3219 0.1690 5.0624 27 6 3.0716 0.0533 6.1420 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.2425 3.3352 -0.6279 32 1 4.3088 2.3942 -1.7159 33 1 5.4237 4.0973 0.0509 34 1 6.1503 2.4712 -0.1565 35 1 4.2011 3.4235 2.0131 36 1 5.7368 2.5237 2.2178 37 1 3.7150 3.4336 3.9490 38 1 4.5733 2.6455 5.2945 39 1 3.4816 5.8759 6.6922 40 1 3.5644 -0.7262 4.1954 41 1 5.5707 1.0362 5.6741 42 1 5.6190 -0.7411 5.5837 43 1 5.8505 0.2315 4.1112 44 1 1.9970 0.0334 5.9599 45 1 3.3683 -0.8568 6.6634 46 1 3.3205 0.9205 6.7536 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234604724.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:33 Heat of formation + Delta-G solvation = -152.227705 kcal Electronic energy + Delta-G solvation = -30074.826065 eV Core-core repulsion = 26092.233921 eV Total energy + Delta-G solvation = -3982.592144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.82484 -37.94370 -36.93562 -36.41641 -36.22501 -35.21269 -32.72616 -30.72215 -30.05968 -29.11898 -27.35384 -26.93077 -26.51727 -22.92584 -22.62275 -21.02791 -20.52029 -19.97907 -18.44880 -17.76807 -17.16521 -17.00753 -16.37589 -16.21127 -15.74540 -15.27509 -15.11782 -14.49597 -14.24020 -13.73760 -13.60473 -13.55695 -13.21313 -13.08510 -12.62059 -12.27694 -12.10418 -12.07645 -11.97535 -11.74932 -11.64741 -11.48841 -11.34496 -11.18610 -11.11071 -11.07838 -11.00528 -10.84768 -10.79456 -10.74064 -10.64354 -10.57137 -10.42633 -10.28486 -9.96021 -9.77489 -9.50661 -8.37176 -7.99730 -6.01136 -4.02037 0.77227 1.91085 2.60301 3.27895 3.36682 3.40276 3.46134 4.06957 4.21166 4.45211 4.50895 4.59906 4.85812 4.97445 5.13902 5.18443 5.21928 5.27998 5.31148 5.32544 5.35912 5.38432 5.58494 5.64801 5.65406 5.72284 5.77298 5.91782 5.96949 5.99090 6.09092 6.18148 6.25856 6.27827 6.36071 6.49023 6.56993 6.79269 7.17067 7.28855 7.45788 7.61977 7.68018 7.97336 8.27860 8.98792 9.61094 11.07675 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013016 B = 0.005209 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.724195 B = 5373.813607 C = 5415.245856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.340 6.340 3 C 0.395 3.605 4 O -0.451 6.451 5 C -0.053 4.053 6 H 0.117 0.883 7 C -0.118 4.118 8 C -0.113 4.113 9 C -0.101 4.101 10 C -0.606 4.606 11 H 0.140 0.860 12 S 2.583 3.417 13 O -0.961 6.961 14 O -0.914 6.914 15 N -0.976 5.976 16 C 0.255 3.745 17 C -0.517 4.517 18 H 0.061 0.939 19 C 0.062 3.938 20 N -0.898 5.898 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.147 3.853 26 C -0.163 4.163 27 C -0.152 4.152 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.263 0.737 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.048 0.952 44 H 0.053 0.947 45 H 0.046 0.954 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.949 -10.093 -11.997 16.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.257 6.257 3 C 0.234 3.766 4 O -0.336 6.336 5 C -0.074 4.074 6 H 0.135 0.865 7 C -0.156 4.156 8 C -0.151 4.151 9 C -0.139 4.139 10 C -0.711 4.711 11 H 0.158 0.842 12 S 2.673 3.327 13 O -0.951 6.951 14 O -0.903 6.903 15 N -0.816 5.816 16 C 0.133 3.867 17 C -0.556 4.556 18 H 0.079 0.921 19 C -0.140 4.140 20 N -0.537 5.537 21 Si 0.719 3.281 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.201 1.201 25 C 0.040 3.960 26 C -0.221 4.221 27 C -0.211 4.211 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.871 -9.670 -12.116 15.978 hybrid contribution -0.279 0.237 0.504 0.624 sum 3.592 -9.433 -11.611 15.385 Atomic orbital electron populations 1.23355 0.75861 1.04074 1.02731 1.86575 1.23925 1.31943 1.83211 1.24365 0.92950 0.82760 0.76540 1.90813 1.66436 1.35652 1.40653 1.21313 0.86614 1.03474 0.95962 0.86451 1.22531 0.99429 0.94798 0.98812 1.22426 0.96939 1.01822 0.93932 1.22211 1.00590 0.92570 0.98532 1.31418 1.21896 1.08035 1.09735 0.84176 1.05993 0.76590 0.74879 0.75190 1.93556 1.72939 1.42291 1.86327 1.93713 1.63982 1.47494 1.85157 1.57603 1.78817 1.13741 1.31443 1.19105 0.97565 0.76236 0.93767 1.21466 1.06255 1.03268 1.24650 0.92081 1.24893 0.96050 0.95956 0.97114 1.69901 1.31220 1.09893 1.42733 0.86655 0.83156 0.77438 0.80816 1.20219 1.21263 1.20113 1.20670 0.94018 0.86215 0.95067 1.22197 0.95873 1.02496 1.01581 1.22113 1.00373 1.01858 0.96738 0.91259 0.91903 0.87716 0.88689 0.90271 0.90148 0.90963 0.88997 0.89391 0.94362 0.94381 0.92777 0.90156 0.91058 0.92337 0.93304 0.92772 0.93540 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 101.05 1.07 1.53 16 2 O -0.34 -5.53 9.25 -45.42 -0.42 -5.95 16 3 C 0.40 6.79 4.62 36.00 0.17 6.95 16 4 O -0.45 -8.99 13.79 -25.61 -0.35 -9.34 16 5 C -0.05 -0.73 3.40 -90.65 -0.31 -1.04 16 6 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 7 C -0.12 -1.44 6.31 -25.07 -0.16 -1.60 16 8 C -0.11 -1.28 6.91 -24.73 -0.17 -1.46 16 9 C -0.10 -1.46 5.95 -25.07 -0.15 -1.61 16 10 C -0.61 -9.07 3.63 -25.61 -0.09 -9.17 16 11 H 0.14 1.65 8.14 -51.93 -0.42 1.23 16 12 S 2.58 52.85 3.26 -107.50 -0.35 52.50 16 13 O -0.96 -20.27 14.91 -65.03 -0.97 -21.23 16 14 O -0.91 -22.76 14.48 -65.83 -0.95 -23.71 16 15 N -0.98 -20.11 2.60 -108.57 -0.28 -20.39 16 16 C 0.25 6.17 4.43 -5.19 -0.02 6.14 16 17 C -0.52 -14.23 7.53 -34.44 -0.26 -14.49 16 18 H 0.06 1.71 7.07 -52.48 -0.37 1.34 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.90 -25.84 13.29 55.43 0.74 -25.10 16 21 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 C 0.15 2.59 3.19 -67.93 -0.22 2.37 16 26 C -0.16 -2.36 9.16 37.16 0.34 -2.02 16 27 C -0.15 -2.77 8.21 37.16 0.30 -2.47 16 28 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 29 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 30 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.09 1.36 6.85 -51.92 -0.36 1.01 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 1.62 5.95 -51.93 -0.31 1.31 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.04 0.98 5.95 -51.93 -0.31 0.68 16 38 H 0.04 0.92 6.45 -51.93 -0.33 0.59 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.08 1.32 6.87 -51.93 -0.36 0.96 16 41 H 0.07 1.15 6.69 -51.93 -0.35 0.80 16 42 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.05 1.06 7.93 -51.92 -0.41 0.65 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.08 1.72 6.65 -51.93 -0.35 1.38 16 LS Contribution 368.20 15.07 5.55 5.55 Total: -1.00 -34.56 368.20 -9.01 -43.57 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -7.35 Total: 2.37 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: 0.40 Total: -15.22 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.45 Total: -45.49 kcal Atomic # 8 Polarization: -57.54 SS G_CDS: -2.70 Total: -60.24 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 52.85 SS G_CDS: -0.35 Total: 52.50 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.56 -9.01 -43.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234604724.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.659 kcal (2) G-P(sol) polarization free energy of solvation -34.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds