Wall clock time and date at job start Tue Mar 31 2020 16:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34226 * 117.00291 * 2 1 4 4 O 1.20826 * 119.99795 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00128 * 179.97438 * 3 2 1 6 6 H 1.08994 * 110.05807 * 30.60274 * 5 3 2 7 7 C 1.54262 * 110.03070 * 152.01964 * 5 3 2 8 8 C 1.54895 * 104.19773 * 142.89637 * 7 5 3 9 9 C 1.54894 * 102.74562 * 322.05543 * 8 7 5 10 10 C 1.53879 * 110.03272 * 269.18675 * 5 3 2 11 11 H 1.08994 * 110.07245 * 121.40799 * 10 5 3 12 12 S 1.81396 * 110.03232 * 359.97438 * 10 5 3 13 13 O 1.42102 * 110.53968 * 69.70083 * 12 10 5 14 14 O 1.42098 * 110.54674 * 292.94886 * 12 10 5 15 15 N 1.65599 * 104.44853 * 181.32374 * 12 10 5 16 16 C 1.46501 * 120.00006 * 90.00414 * 15 12 10 17 17 C 1.50704 * 109.47320 * 94.99575 * 16 15 12 18 18 H 1.08005 * 119.99918 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00321 * 180.27239 * 17 16 15 20 20 N 1.31523 * 119.99598 * 359.73326 * 19 17 16 21 21 Si 1.86792 * 120.00155 * 179.72607 * 19 17 16 22 22 H 1.48496 * 109.47250 * 60.00792 * 21 19 17 23 23 H 1.48502 * 109.46969 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47293 * 300.00528 * 21 19 17 25 25 C 1.46504 * 120.00302 * 270.00149 * 15 12 10 26 26 C 1.52995 * 109.46892 * 120.00012 * 25 15 12 27 27 C 1.53002 * 109.47233 * 240.00157 * 25 15 12 28 28 H 1.08999 * 109.47062 * 299.99866 * 1 2 3 29 29 H 1.08997 * 109.47109 * 59.99876 * 1 2 3 30 30 H 1.09006 * 109.46898 * 179.97438 * 1 2 3 31 31 H 1.09007 * 110.49009 * 24.21881 * 7 5 3 32 32 H 1.09001 * 110.59762 * 261.62651 * 7 5 3 33 33 H 1.09004 * 110.75849 * 203.74788 * 8 7 5 34 34 H 1.08990 * 110.91528 * 80.44092 * 8 7 5 35 35 H 1.09002 * 110.48701 * 279.26454 * 9 8 7 36 36 H 1.08998 * 110.48819 * 156.61868 * 9 8 7 37 37 H 1.08999 * 109.46950 * 334.99831 * 16 15 12 38 38 H 1.09002 * 109.47151 * 215.00063 * 16 15 12 39 39 H 0.96998 * 119.99365 * 179.97438 * 20 19 17 40 40 H 1.08997 * 109.46728 * 359.97438 * 25 15 12 41 41 H 1.08997 * 109.47521 * 60.00379 * 26 25 15 42 42 H 1.09007 * 109.47086 * 180.02562 * 26 25 15 43 43 H 1.09003 * 109.47601 * 299.99871 * 26 25 15 44 44 H 1.09008 * 109.47007 * 59.99704 * 27 25 15 45 45 H 1.08998 * 109.46937 * 179.97438 * 27 25 15 46 46 H 1.08996 * 109.46847 * 300.00053 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9859 0.4142 -0.5203 7 6 4.0273 2.5804 -0.6795 8 6 5.2608 3.0237 0.1459 9 6 4.8527 2.6565 1.5943 10 6 4.0911 1.3231 1.4463 11 1 4.7651 0.4860 1.6278 12 16 2.7034 1.2680 2.6132 13 8 2.0903 -0.0139 2.5987 14 8 1.9252 2.4533 2.5191 15 7 3.4144 1.3639 4.1057 16 6 3.6443 2.6715 4.7250 17 6 2.4984 2.9988 5.6475 18 1 1.6809 2.3023 5.7615 19 6 2.4912 4.1898 6.3422 20 7 3.4869 5.0378 6.2037 21 14 1.0672 4.5989 7.4798 22 1 0.9681 3.5644 8.5405 23 1 1.2973 5.9270 8.1030 24 1 -0.1961 4.6307 6.6998 25 6 3.8137 0.1410 4.8068 26 6 5.3219 0.1690 5.0624 27 6 3.0716 0.0533 6.1420 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.2425 3.3352 -0.6279 32 1 4.3088 2.3942 -1.7159 33 1 5.4237 4.0973 0.0509 34 1 6.1503 2.4712 -0.1565 35 1 4.2011 3.4235 2.0131 36 1 5.7368 2.5237 2.2178 37 1 3.7150 3.4336 3.9490 38 1 4.5733 2.6455 5.2945 39 1 3.4816 5.8759 6.6922 40 1 3.5644 -0.7262 4.1954 41 1 5.5707 1.0362 5.6741 42 1 5.6190 -0.7411 5.5837 43 1 5.8505 0.2315 4.1112 44 1 1.9970 0.0334 5.9599 45 1 3.3683 -0.8568 6.6634 46 1 3.3205 0.9205 6.7536 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234604724.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:32 Heat of formation + Delta-G solvation = -175.427061 kcal Electronic energy + Delta-G solvation = -30075.832064 eV Core-core repulsion = 26092.233921 eV Total energy + Delta-G solvation = -3983.598144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.09044 -39.08277 -38.47821 -38.05561 -37.54113 -36.88639 -34.78207 -32.29356 -31.19099 -30.24348 -28.84108 -28.46375 -27.86202 -24.80778 -23.90814 -22.12061 -21.92671 -21.21011 -19.81326 -19.29834 -18.67351 -18.55700 -18.15399 -17.57986 -17.07794 -16.65018 -16.62998 -16.25319 -15.47648 -15.29020 -14.96819 -14.71501 -14.70525 -14.45786 -14.11321 -13.82908 -13.69862 -13.44637 -13.20759 -13.07791 -13.04074 -12.98705 -12.91971 -12.73790 -12.70254 -12.59444 -12.37777 -12.29334 -12.15402 -12.07879 -12.05770 -11.93438 -11.85856 -11.61142 -11.53794 -11.42214 -11.20698 -10.52613 -9.68642 -8.16787 -6.23157 -0.75973 0.61739 1.34028 1.37938 1.42051 1.44749 1.78483 2.40695 2.80437 3.00204 3.13873 3.15655 3.36826 3.53434 3.91287 3.98745 4.06605 4.14984 4.18190 4.22802 4.24616 4.31596 4.34591 4.39718 4.56756 4.56905 4.63960 4.87985 4.90920 4.91171 4.95645 5.00968 5.10588 5.12528 5.15223 5.18079 5.25680 5.37367 5.44392 5.58863 5.68678 5.81874 6.04793 6.20252 6.35358 6.81889 7.41924 8.90527 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013016 B = 0.005209 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.724195 B = 5373.813607 C = 5415.245856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.343 6.343 3 C 0.385 3.615 4 O -0.492 6.492 5 C -0.057 4.057 6 H 0.170 0.830 7 C -0.120 4.120 8 C -0.103 4.103 9 C -0.111 4.111 10 C -0.573 4.573 11 H 0.190 0.810 12 S 2.564 3.436 13 O -0.979 6.979 14 O -0.978 6.978 15 N -0.983 5.983 16 C 0.274 3.726 17 C -0.529 4.529 18 H 0.044 0.956 19 C 0.014 3.986 20 N -0.922 5.922 21 Si 0.941 3.059 22 H -0.263 1.263 23 H -0.275 1.275 24 H -0.287 1.287 25 C 0.135 3.865 26 C -0.155 4.155 27 C -0.152 4.152 28 H 0.037 0.963 29 H 0.079 0.921 30 H 0.141 0.859 31 H 0.060 0.940 32 H 0.120 0.880 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.047 0.953 36 H 0.109 0.891 37 H 0.017 0.983 38 H 0.038 0.962 39 H 0.265 0.735 40 H 0.097 0.903 41 H 0.049 0.951 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.027 0.973 45 H 0.083 0.917 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.689 -12.357 -13.568 19.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.259 6.259 3 C 0.225 3.775 4 O -0.379 6.379 5 C -0.077 4.077 6 H 0.187 0.813 7 C -0.158 4.158 8 C -0.140 4.140 9 C -0.149 4.149 10 C -0.685 4.685 11 H 0.207 0.793 12 S 2.662 3.338 13 O -0.970 6.970 14 O -0.968 6.968 15 N -0.822 5.822 16 C 0.151 3.849 17 C -0.569 4.569 18 H 0.062 0.938 19 C -0.185 4.185 20 N -0.563 5.563 21 Si 0.766 3.234 22 H -0.188 1.188 23 H -0.199 1.199 24 H -0.213 1.213 25 C 0.029 3.971 26 C -0.214 4.214 27 C -0.210 4.210 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.159 0.841 31 H 0.079 0.921 32 H 0.138 0.862 33 H 0.102 0.898 34 H 0.132 0.868 35 H 0.066 0.934 36 H 0.127 0.873 37 H 0.035 0.965 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.115 0.885 41 H 0.068 0.932 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.046 0.954 45 H 0.102 0.898 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.560 -11.968 -13.619 19.281 hybrid contribution -1.173 0.870 0.915 1.724 sum 5.387 -11.098 -12.704 17.708 Atomic orbital electron populations 1.23628 0.75074 1.06288 1.02047 1.86568 1.24916 1.31640 1.82783 1.25214 0.94564 0.82349 0.75326 1.90800 1.67667 1.36952 1.42462 1.21746 0.84120 1.06542 0.95312 0.81292 1.22620 0.98808 0.93099 1.01261 1.22488 0.97845 1.02869 0.90842 1.22325 1.00315 0.90953 1.01342 1.31115 1.18838 1.10478 1.08048 0.79298 1.06119 0.77969 0.73548 0.76114 1.93517 1.74635 1.42025 1.86774 1.93641 1.67430 1.49557 1.86152 1.57425 1.79025 1.13260 1.32487 1.18612 0.96096 0.77684 0.92473 1.21771 1.06801 1.03093 1.25236 0.93764 1.25577 0.98236 0.96074 0.98621 1.69973 1.32478 1.10206 1.43633 0.85880 0.79965 0.78071 0.79446 1.18819 1.19942 1.21276 1.21019 0.96244 0.85396 0.94393 1.22147 0.93237 1.03036 1.02991 1.22096 0.98960 1.02428 0.97564 0.94425 0.90201 0.84086 0.92102 0.86174 0.89773 0.86773 0.93446 0.87288 0.96463 0.94402 0.92598 0.88515 0.93223 0.89278 0.90743 0.95413 0.89788 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 10.56 113.37 1.20 1.82 16 2 O -0.34 -10.84 9.25 -45.47 -0.42 -11.26 16 3 C 0.39 13.01 4.62 71.24 0.33 13.34 16 4 O -0.49 -20.43 13.79 28.53 0.39 -20.04 16 5 C -0.06 -1.38 3.40 -10.82 -0.04 -1.41 16 6 H 0.17 2.42 8.14 -2.39 -0.02 2.40 16 7 C -0.12 -2.57 6.31 31.67 0.20 -2.37 16 8 C -0.10 -1.93 6.91 31.89 0.22 -1.71 16 9 C -0.11 -3.00 5.95 31.67 0.19 -2.81 16 10 C -0.57 -15.54 3.63 31.32 0.11 -15.42 16 11 H 0.19 3.34 8.14 -2.39 -0.02 3.32 16 12 S 2.56 106.46 3.26 -56.49 -0.18 106.27 16 13 O -0.98 -41.55 14.91 -120.49 -1.80 -43.34 16 14 O -0.98 -52.01 14.48 -119.72 -1.73 -53.75 16 15 N -0.98 -41.08 2.60 -497.40 -1.30 -42.38 16 16 C 0.27 13.82 4.43 85.63 0.38 14.20 16 17 C -0.53 -30.57 7.53 25.60 0.19 -30.38 16 18 H 0.04 2.63 7.07 -2.91 -0.02 2.61 16 19 C 0.01 0.80 5.46 84.65 0.46 1.27 16 20 N -0.92 -54.63 13.29 21.45 0.28 -54.35 16 21 Si 0.94 46.40 29.54 68.60 2.03 48.42 16 22 H -0.26 -12.32 7.11 99.48 0.71 -11.62 16 23 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 25 C 0.13 4.61 3.19 44.99 0.14 4.75 16 26 C -0.16 -4.08 9.16 71.98 0.66 -3.42 16 27 C -0.15 -5.57 8.21 71.98 0.59 -4.98 16 28 H 0.04 1.26 8.13 -2.39 -0.02 1.24 16 29 H 0.08 1.89 8.13 -2.39 -0.02 1.87 16 30 H 0.14 2.74 8.14 -2.38 -0.02 2.72 16 31 H 0.06 1.74 6.85 -2.38 -0.02 1.73 16 32 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.05 1.74 5.95 -2.39 -0.01 1.72 16 36 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.02 0.95 5.95 -2.39 -0.01 0.93 16 38 H 0.04 1.89 6.45 -2.39 -0.02 1.88 16 39 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 40 H 0.10 2.98 6.87 -2.39 -0.02 2.97 16 41 H 0.05 1.52 6.69 -2.39 -0.02 1.51 16 42 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.03 1.11 7.93 -2.38 -0.02 1.09 16 45 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 46 H 0.06 2.37 6.65 -2.39 -0.02 2.35 16 Total: -1.00 -83.13 368.20 2.88 -80.24 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.97 Total: 17.30 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 4.64 Total: -27.13 kcal Atomic # 7 Polarization: -95.71 SS G_CDS: -1.01 Total: -96.72 kcal Atomic # 8 Polarization: -124.83 SS G_CDS: -3.56 Total: -128.39 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Atomic # 16 Polarization: 106.46 SS G_CDS: -0.18 Total: 106.27 kcal Total: -83.13 2.88 -80.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234604724.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.184 kcal (2) G-P(sol) polarization free energy of solvation -83.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds