Wall clock time and date at job start Tue Mar 31 2020 16:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46876 * 2 1 4 4 N 1.46496 * 109.47298 * 180.02562 * 3 2 1 5 5 C 1.46503 * 120.00230 * 270.00413 * 4 3 2 6 6 C 1.50701 * 109.46852 * 269.99969 * 5 4 3 7 7 O 1.20825 * 120.00123 * 359.97438 * 6 5 4 8 8 O 1.34228 * 120.00241 * 179.97438 * 6 5 4 9 9 C 1.34773 * 120.00415 * 89.99682 * 4 3 2 10 10 O 1.21729 * 119.99956 * 0.02562 * 9 4 3 11 11 C 1.46254 * 120.00587 * 179.97438 * 9 4 3 12 12 C 1.35023 * 120.00310 * 180.02562 * 11 9 4 13 13 C 1.46957 * 119.99860 * 180.02562 * 12 11 9 14 14 C 1.40027 * 120.10332 * 359.72219 * 13 12 11 15 15 C 1.37603 * 119.89524 * 179.78470 * 14 13 12 16 16 C 1.39167 * 120.10115 * 0.49349 * 15 14 13 17 17 O 1.35577 * 119.89656 * 179.76261 * 16 15 14 18 18 C 1.34777 * 116.99965 * 174.42496 * 17 16 15 19 19 H 1.08007 * 120.00251 * 5.04759 * 18 17 16 20 20 C 1.38716 * 120.00175 * 185.05653 * 18 17 16 21 21 N 1.31509 * 119.99959 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00367 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47523 * 89.99901 * 22 20 18 24 24 H 1.48503 * 109.47340 * 209.99896 * 22 20 18 25 25 H 1.48498 * 109.47130 * 329.99591 * 22 20 18 26 26 C 1.39178 * 120.20663 * 359.73926 * 16 15 14 27 27 C 1.37591 * 120.10059 * 0.02562 * 26 16 15 28 28 H 1.08999 * 109.47209 * 299.99424 * 1 2 3 29 29 H 1.08992 * 109.47837 * 60.00145 * 1 2 3 30 30 H 1.09006 * 109.46787 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47209 * 240.00575 * 2 1 3 32 32 H 1.08997 * 109.47746 * 120.00338 * 2 1 3 33 33 H 1.09003 * 109.47171 * 60.00125 * 3 2 1 34 34 H 1.09002 * 109.47204 * 300.00194 * 3 2 1 35 35 H 1.09001 * 109.47076 * 29.99229 * 5 4 3 36 36 H 1.08991 * 109.47650 * 149.99631 * 5 4 3 37 37 H 0.96699 * 117.00576 * 179.97438 * 8 6 5 38 38 H 1.07997 * 119.99745 * 0.27828 * 11 9 4 39 39 H 1.07997 * 119.99788 * 359.97438 * 12 11 9 40 40 H 1.07994 * 120.04844 * 0.02562 * 14 13 12 41 41 H 1.08003 * 119.94376 * 180.23112 * 15 14 13 42 42 H 0.97000 * 120.00320 * 179.97438 * 21 20 18 43 43 H 1.07997 * 119.94866 * 180.02562 * 26 16 15 44 44 H 1.07998 * 120.05327 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.2380 1.4424 1.2678 6 6 4.4892 2.8632 1.7030 7 8 4.0967 3.7816 1.0231 8 8 5.1491 3.1084 2.8458 9 6 4.1783 1.4428 -1.1680 10 8 3.5693 1.4433 -2.2220 11 6 5.6409 1.4435 -1.1687 12 6 6.3155 1.4442 -2.3383 13 6 7.7851 1.4443 -2.3388 14 6 8.4879 1.4495 -1.1277 15 6 9.8639 1.4451 -1.1332 16 6 10.5570 1.4458 -2.3400 17 8 11.9128 1.4463 -2.3405 18 6 12.5242 1.3303 -3.5360 19 1 11.9389 1.3245 -4.4437 20 6 13.9053 1.2182 -3.6007 21 7 14.6182 1.2257 -2.4956 22 14 14.7527 1.0567 -5.2576 23 1 15.0867 2.4074 -5.7766 24 1 15.9991 0.2646 -5.1011 25 1 13.8463 0.3697 -6.2123 26 6 9.8628 1.4455 -3.5462 27 6 8.4869 1.4450 -3.5506 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6765 1.9564 -0.8900 35 1 3.6492 0.9285 2.0276 36 1 5.1903 0.9287 1.1370 37 1 5.2866 4.0356 3.0832 38 1 6.1812 1.4393 -0.2336 39 1 5.7751 1.4438 -3.2733 40 1 7.9507 1.4531 -0.1908 41 1 10.4067 1.4454 -0.1995 42 1 15.5839 1.1469 -2.5408 43 1 10.4049 1.4456 -4.4803 44 1 7.9490 1.4443 -4.4871 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236934550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:37 Heat of formation + Delta-G solvation = -112.517487 kcal Electronic energy + Delta-G solvation = -27306.818607 eV Core-core repulsion = 23190.504476 eV Total energy + Delta-G solvation = -4116.314131 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.80415 -39.59170 -39.16485 -37.00471 -36.52000 -35.95857 -33.84865 -33.07672 -32.28600 -30.46235 -28.96756 -28.49949 -26.46495 -25.58794 -23.31588 -22.42283 -22.19300 -21.68334 -20.19185 -18.78465 -18.44429 -18.09171 -17.58003 -17.13916 -16.81315 -16.39043 -15.77308 -15.25319 -14.83362 -14.72928 -14.70649 -14.42514 -14.02943 -13.85614 -13.57328 -13.37612 -13.32588 -13.09885 -12.89440 -12.61208 -12.31754 -12.17467 -11.91232 -11.81580 -11.77264 -11.68340 -11.62750 -11.14607 -11.11289 -10.97248 -10.94030 -10.70660 -10.55920 -9.81755 -9.63994 -9.52080 -9.04457 -8.87273 -8.41183 -7.15059 -6.67585 -4.22212 1.00729 1.91940 2.10987 2.33431 2.56336 2.99730 3.02992 3.04896 3.08432 3.55991 3.80379 4.44057 4.48108 4.53884 4.70304 4.80708 4.82474 4.90231 4.96243 5.02173 5.03784 5.18776 5.23716 5.41740 5.49789 5.52854 5.54895 5.62885 5.74871 5.86146 5.95752 5.98327 6.08405 6.20628 6.22817 6.43097 6.46038 6.56316 6.75921 6.88243 7.09527 7.16067 7.21767 7.27992 7.60873 7.61835 7.77713 8.18769 8.77116 9.43685 10.48891 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020500 B = 0.002132 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.535333 B =13127.057228 C =14052.938482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C 0.118 3.882 4 N -0.603 5.603 5 C 0.121 3.879 6 C 0.453 3.547 7 O -0.500 6.500 8 O -0.517 6.517 9 C 0.566 3.434 10 O -0.544 6.544 11 C -0.293 4.293 12 C 0.047 3.953 13 C -0.201 4.201 14 C -0.042 4.042 15 C -0.199 4.199 16 C 0.168 3.832 17 O -0.161 6.161 18 C -0.393 4.393 19 H 0.098 0.902 20 C 0.041 3.959 21 N -0.851 5.851 22 Si 0.945 3.055 23 H -0.271 1.271 24 H -0.275 1.275 25 H -0.265 1.265 26 C -0.242 4.242 27 C -0.033 4.033 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.412 0.588 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.274 0.726 43 H 0.132 0.868 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.163 -1.331 8.936 22.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C -0.004 4.004 4 N -0.336 5.336 5 C -0.005 4.005 6 C 0.292 3.708 7 O -0.386 6.386 8 O -0.329 6.329 9 C 0.360 3.640 10 O -0.423 6.423 11 C -0.314 4.314 12 C 0.027 3.973 13 C -0.202 4.202 14 C -0.060 4.060 15 C -0.218 4.218 16 C 0.111 3.889 17 O -0.062 6.062 18 C -0.468 4.468 19 H 0.115 0.885 20 C -0.165 4.165 21 N -0.484 5.484 22 Si 0.769 3.231 23 H -0.196 1.196 24 H -0.200 1.200 25 H -0.189 1.189 26 C -0.261 4.261 27 C -0.051 4.051 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.139 0.861 36 H 0.146 0.854 37 H 0.271 0.729 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.084 0.916 43 H 0.149 0.851 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -20.194 -1.474 8.324 21.892 hybrid contribution 0.606 0.691 -0.457 1.027 sum -19.588 -0.783 7.867 21.123 Atomic orbital electron populations 1.21684 0.95105 1.01934 1.01943 1.21905 0.96178 0.97051 1.02726 1.21512 0.78510 0.96923 1.03437 1.47487 1.06574 1.74888 1.04639 1.21006 1.01321 0.90167 0.88019 1.24316 0.74427 0.93799 0.78227 1.90769 1.47659 1.46654 1.53518 1.84511 1.70804 1.36666 1.40947 1.18385 0.88432 0.74592 0.82555 1.90777 1.70567 1.50524 1.30469 1.22442 0.91834 1.17622 0.99458 1.22312 0.92588 0.84675 0.97696 1.18451 0.91352 1.16735 0.93682 1.20843 0.92951 0.95694 0.96499 1.20142 0.93350 1.12076 0.96274 1.19610 0.84614 0.91271 0.93414 1.83902 1.13288 1.75482 1.33512 1.21484 0.90275 1.52002 0.83069 0.88500 1.25405 0.95396 0.95983 0.99710 1.70011 1.07225 1.43762 1.27354 0.85639 0.78920 0.78907 0.79622 1.19620 1.20026 1.18925 1.21102 0.94158 1.12365 0.98507 1.20991 0.93581 0.94169 0.96374 0.92739 0.92409 0.92424 0.91194 0.91887 0.90985 0.89482 0.86060 0.85388 0.72901 0.86138 0.85809 0.86659 0.86081 0.91560 0.85073 0.86753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.14 -1.13 6.26 -26.73 -0.17 -1.30 16 3 C 0.12 1.14 5.41 -4.04 -0.02 1.12 16 4 N -0.60 -6.65 1.96 -176.76 -0.35 -7.00 16 5 C 0.12 0.94 5.71 -5.19 -0.03 0.91 16 6 C 0.45 4.36 8.40 36.01 0.30 4.66 16 7 O -0.50 -6.89 17.19 -18.75 -0.32 -7.21 16 8 O -0.52 -3.68 13.42 -39.25 -0.53 -4.21 16 9 C 0.57 8.23 7.60 -13.04 -0.10 8.13 16 10 O -0.54 -9.62 15.81 5.16 0.08 -9.54 16 11 C -0.29 -4.11 8.61 -37.51 -0.32 -4.43 16 12 C 0.05 0.72 9.45 -37.19 -0.35 0.37 16 13 C -0.20 -3.43 5.87 -105.02 -0.62 -4.04 16 14 C -0.04 -0.70 9.40 -39.14 -0.37 -1.07 16 15 C -0.20 -3.94 9.97 -39.47 -0.39 -4.33 16 16 C 0.17 3.82 6.66 -38.89 -0.26 3.56 16 17 O -0.16 -4.34 9.74 0.73 0.01 -4.33 16 18 C -0.39 -10.36 9.48 30.91 0.29 -10.07 16 19 H 0.10 2.35 5.18 -52.48 -0.27 2.07 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 21 N -0.85 -23.64 13.67 55.48 0.76 -22.88 16 22 Si 0.95 19.40 29.55 -169.99 -5.02 14.38 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 26 C -0.24 -4.98 9.14 -39.47 -0.36 -5.34 16 27 C -0.03 -0.58 9.78 -39.15 -0.38 -0.96 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 34 H 0.09 1.02 7.42 -51.93 -0.39 0.64 16 35 H 0.12 0.54 8.07 -51.93 -0.42 0.12 16 36 H 0.13 0.85 6.09 -51.93 -0.32 0.53 16 37 H 0.41 1.55 9.10 45.56 0.41 1.96 16 38 H 0.12 1.44 4.21 -52.49 -0.22 1.22 16 39 H 0.12 1.89 7.52 -52.49 -0.39 1.50 16 40 H 0.12 1.59 6.16 -52.49 -0.32 1.26 16 41 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 42 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.13 2.67 5.62 -52.49 -0.29 2.37 16 44 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 382.39 15.07 5.76 5.76 Total: -1.00 -33.93 382.39 -6.84 -40.77 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -4.72 Total: 6.67 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -2.51 Total: -12.42 kcal Atomic # 7 Polarization: -30.29 SS G_CDS: 0.41 Total: -29.88 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.76 Total: -25.28 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.93 -6.84 -40.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236934550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.748 kcal (2) G-P(sol) polarization free energy of solvation -33.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds