Wall clock time and date at job start Tue Mar 31 2020 16:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46876 * 2 1 4 4 N 1.46496 * 109.47298 * 180.02562 * 3 2 1 5 5 C 1.46503 * 120.00230 * 270.00413 * 4 3 2 6 6 C 1.50701 * 109.46852 * 269.99969 * 5 4 3 7 7 O 1.20825 * 120.00123 * 359.97438 * 6 5 4 8 8 O 1.34228 * 120.00241 * 179.97438 * 6 5 4 9 9 C 1.34773 * 120.00415 * 89.99682 * 4 3 2 10 10 O 1.21729 * 119.99956 * 0.02562 * 9 4 3 11 11 C 1.46254 * 120.00587 * 179.97438 * 9 4 3 12 12 C 1.35023 * 120.00310 * 180.02562 * 11 9 4 13 13 C 1.46957 * 119.99860 * 180.02562 * 12 11 9 14 14 C 1.40027 * 120.10332 * 359.72219 * 13 12 11 15 15 C 1.37603 * 119.89524 * 179.78470 * 14 13 12 16 16 C 1.39167 * 120.10115 * 0.49349 * 15 14 13 17 17 O 1.35577 * 119.89656 * 179.76261 * 16 15 14 18 18 C 1.34777 * 116.99965 * 174.42496 * 17 16 15 19 19 H 1.08007 * 120.00251 * 5.04759 * 18 17 16 20 20 C 1.38716 * 120.00175 * 185.05653 * 18 17 16 21 21 N 1.31509 * 119.99959 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00367 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47523 * 89.99901 * 22 20 18 24 24 H 1.48503 * 109.47340 * 209.99896 * 22 20 18 25 25 H 1.48498 * 109.47130 * 329.99591 * 22 20 18 26 26 C 1.39178 * 120.20663 * 359.73926 * 16 15 14 27 27 C 1.37591 * 120.10059 * 0.02562 * 26 16 15 28 28 H 1.08999 * 109.47209 * 299.99424 * 1 2 3 29 29 H 1.08992 * 109.47837 * 60.00145 * 1 2 3 30 30 H 1.09006 * 109.46787 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47209 * 240.00575 * 2 1 3 32 32 H 1.08997 * 109.47746 * 120.00338 * 2 1 3 33 33 H 1.09003 * 109.47171 * 60.00125 * 3 2 1 34 34 H 1.09002 * 109.47204 * 300.00194 * 3 2 1 35 35 H 1.09001 * 109.47076 * 29.99229 * 5 4 3 36 36 H 1.08991 * 109.47650 * 149.99631 * 5 4 3 37 37 H 0.96699 * 117.00576 * 179.97438 * 8 6 5 38 38 H 1.07997 * 119.99745 * 0.27828 * 11 9 4 39 39 H 1.07997 * 119.99788 * 359.97438 * 12 11 9 40 40 H 1.07994 * 120.04844 * 0.02562 * 14 13 12 41 41 H 1.08003 * 119.94376 * 180.23112 * 15 14 13 42 42 H 0.97000 * 120.00320 * 179.97438 * 21 20 18 43 43 H 1.07997 * 119.94866 * 180.02562 * 26 16 15 44 44 H 1.07998 * 120.05327 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.2380 1.4424 1.2678 6 6 4.4892 2.8632 1.7030 7 8 4.0967 3.7816 1.0231 8 8 5.1491 3.1084 2.8458 9 6 4.1783 1.4428 -1.1680 10 8 3.5693 1.4433 -2.2220 11 6 5.6409 1.4435 -1.1687 12 6 6.3155 1.4442 -2.3383 13 6 7.7851 1.4443 -2.3388 14 6 8.4879 1.4495 -1.1277 15 6 9.8639 1.4451 -1.1332 16 6 10.5570 1.4458 -2.3400 17 8 11.9128 1.4463 -2.3405 18 6 12.5242 1.3303 -3.5360 19 1 11.9389 1.3245 -4.4437 20 6 13.9053 1.2182 -3.6007 21 7 14.6182 1.2257 -2.4956 22 14 14.7527 1.0567 -5.2576 23 1 15.0867 2.4074 -5.7766 24 1 15.9991 0.2646 -5.1011 25 1 13.8463 0.3697 -6.2123 26 6 9.8628 1.4455 -3.5462 27 6 8.4869 1.4450 -3.5506 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6765 1.9564 -0.8900 35 1 3.6492 0.9285 2.0276 36 1 5.1903 0.9287 1.1370 37 1 5.2866 4.0356 3.0832 38 1 6.1812 1.4393 -0.2336 39 1 5.7751 1.4438 -3.2733 40 1 7.9507 1.4531 -0.1908 41 1 10.4067 1.4454 -0.1995 42 1 15.5839 1.1469 -2.5408 43 1 10.4049 1.4456 -4.4803 44 1 7.9490 1.4443 -4.4871 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236934550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:36 Heat of formation + Delta-G solvation = -134.069431 kcal Electronic energy + Delta-G solvation = -27307.753169 eV Core-core repulsion = 23190.504476 eV Total energy + Delta-G solvation = -4117.248693 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.66085 -40.87039 -40.47773 -38.55567 -37.37415 -36.80765 -34.92710 -34.39016 -33.82260 -31.98881 -29.95004 -29.62599 -27.71905 -27.08439 -24.51842 -23.71991 -23.11936 -22.66297 -21.43317 -20.17015 -19.44918 -19.14058 -18.88754 -18.56919 -17.61611 -17.33426 -16.62417 -16.46608 -16.42532 -16.02307 -15.74010 -15.64082 -15.58265 -15.21363 -14.87756 -14.60151 -14.21997 -14.13956 -14.02812 -13.65011 -13.54850 -13.34062 -13.12654 -12.97518 -12.73498 -12.71513 -12.58588 -12.49618 -12.30524 -12.21421 -12.13294 -11.77636 -11.59917 -11.23037 -11.13775 -10.98458 -10.60114 -9.92463 -9.91014 -8.71417 -8.52846 -6.18776 -0.31037 0.57051 1.07154 1.20517 1.35853 1.44949 1.52756 1.65681 2.14728 2.16229 2.47753 2.85105 3.16253 3.39873 3.47629 3.85191 3.94783 3.99796 4.04834 4.09247 4.21054 4.22180 4.34108 4.40868 4.43486 4.45170 4.55818 4.63581 4.73994 4.91920 4.93655 5.00278 5.11431 5.16922 5.18793 5.27871 5.29626 5.33440 5.50611 5.57522 5.62384 5.64850 5.76772 5.96480 6.07874 6.20613 6.91510 6.98410 7.09632 7.67958 8.69008 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020500 B = 0.002132 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.535333 B =13127.057228 C =14052.938482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.116 3.884 4 N -0.596 5.596 5 C 0.112 3.888 6 C 0.459 3.541 7 O -0.549 6.549 8 O -0.508 6.508 9 C 0.556 3.444 10 O -0.582 6.582 11 C -0.259 4.259 12 C 0.025 3.975 13 C -0.174 4.174 14 C -0.036 4.036 15 C -0.205 4.205 16 C 0.132 3.868 17 O -0.217 6.217 18 C -0.417 4.417 19 H 0.106 0.894 20 C -0.018 4.018 21 N -0.912 5.912 22 Si 1.018 2.982 23 H -0.263 1.263 24 H -0.271 1.271 25 H -0.253 1.253 26 C -0.249 4.249 27 C -0.038 4.038 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.058 0.942 35 H 0.165 0.835 36 H 0.148 0.852 37 H 0.427 0.573 38 H 0.149 0.851 39 H 0.125 0.875 40 H 0.158 0.842 41 H 0.125 0.875 42 H 0.275 0.725 43 H 0.125 0.875 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.325 -1.958 10.451 25.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.006 4.006 4 N -0.327 5.327 5 C -0.013 4.013 6 C 0.301 3.699 7 O -0.439 6.439 8 O -0.321 6.321 9 C 0.350 3.650 10 O -0.464 6.464 11 C -0.279 4.279 12 C 0.005 3.995 13 C -0.175 4.175 14 C -0.053 4.053 15 C -0.224 4.224 16 C 0.080 3.920 17 O -0.122 6.122 18 C -0.492 4.492 19 H 0.123 0.877 20 C -0.217 4.217 21 N -0.549 5.549 22 Si 0.837 3.163 23 H -0.188 1.188 24 H -0.195 1.195 25 H -0.176 1.176 26 C -0.268 4.268 27 C -0.056 4.056 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.077 0.923 35 H 0.183 0.817 36 H 0.165 0.835 37 H 0.289 0.711 38 H 0.166 0.834 39 H 0.143 0.857 40 H 0.175 0.825 41 H 0.143 0.857 42 H 0.084 0.916 43 H 0.143 0.857 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -23.431 -2.100 9.901 25.524 hybrid contribution 0.932 0.924 -0.656 1.467 sum -22.499 -1.176 9.246 24.353 Atomic orbital electron populations 1.21678 0.94083 1.02546 1.02201 1.21834 0.97027 0.95644 1.02550 1.21634 0.77720 0.98041 1.03206 1.47530 1.07327 1.72933 1.04937 1.21469 1.02756 0.89666 0.87359 1.24570 0.73398 0.93873 0.78030 1.90777 1.49848 1.48189 1.55110 1.84479 1.69785 1.38186 1.39657 1.18558 0.88693 0.74630 0.83153 1.90772 1.71241 1.52172 1.32207 1.22781 0.91970 1.13080 1.00075 1.22212 0.91389 0.87260 0.98630 1.18757 0.92349 1.12926 0.93457 1.21236 0.91765 0.94081 0.98264 1.20415 0.94646 1.11794 0.95579 1.20187 0.84026 0.92459 0.95375 1.83885 1.15110 1.79411 1.33831 1.21892 0.90998 1.52742 0.83593 0.87716 1.26603 0.95844 0.95540 1.03732 1.70142 1.07412 1.47453 1.29873 0.84589 0.77723 0.79178 0.74798 1.18837 1.19516 1.17622 1.21202 0.95392 1.12517 0.97700 1.21310 0.92492 0.93537 0.98281 0.91178 0.93510 0.91646 0.93697 0.89602 0.88675 0.92297 0.81745 0.83494 0.71112 0.83405 0.85713 0.82500 0.85671 0.91562 0.85696 0.83844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 71.98 0.71 -0.87 16 2 C -0.13 -1.76 6.26 30.59 0.19 -1.57 16 3 C 0.12 1.93 5.41 86.38 0.47 2.40 16 4 N -0.60 -11.09 1.96 -831.36 -1.63 -12.72 16 5 C 0.11 1.17 5.71 85.63 0.49 1.66 16 6 C 0.46 6.97 8.40 71.24 0.60 7.57 16 7 O -0.55 -13.68 17.19 21.97 0.38 -13.30 16 8 O -0.51 -5.05 13.42 -51.40 -0.69 -5.74 16 9 C 0.56 14.64 7.60 86.33 0.66 15.30 16 10 O -0.58 -19.84 15.81 -4.44 -0.07 -19.91 16 11 C -0.26 -6.22 8.61 23.61 0.20 -6.02 16 12 C 0.02 0.69 9.45 23.82 0.23 0.91 16 13 C -0.17 -5.45 5.87 -20.12 -0.12 -5.56 16 14 C -0.04 -1.10 9.40 22.55 0.21 -0.89 16 15 C -0.21 -8.04 9.97 22.34 0.22 -7.82 16 16 C 0.13 6.22 6.66 22.72 0.15 6.37 16 17 O -0.22 -12.47 9.74 -20.30 -0.20 -12.67 16 18 C -0.42 -23.27 9.48 67.93 0.64 -22.62 16 19 H 0.11 5.35 5.18 -2.91 -0.02 5.34 16 20 C -0.02 -1.00 5.49 84.86 0.47 -0.53 16 21 N -0.91 -53.88 13.67 21.62 0.30 -53.58 16 22 Si 1.02 41.29 29.55 68.60 2.03 43.31 16 23 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 24 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 25 H -0.25 -9.53 7.11 99.48 0.71 -8.83 16 26 C -0.25 -10.39 9.14 22.34 0.20 -10.18 16 27 C -0.04 -1.30 9.78 22.55 0.22 -1.08 16 28 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.09 1.16 8.07 -2.39 -0.02 1.14 16 34 H 0.06 1.34 7.42 -2.39 -0.02 1.32 16 35 H 0.17 0.40 8.07 -2.39 -0.02 0.38 16 36 H 0.15 1.03 6.09 -2.39 -0.01 1.02 16 37 H 0.43 1.69 9.10 -74.06 -0.67 1.02 16 38 H 0.15 2.68 4.21 -2.91 -0.01 2.67 16 39 H 0.13 3.52 7.52 -2.91 -0.02 3.50 16 40 H 0.16 3.48 6.16 -2.91 -0.02 3.46 16 41 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 42 H 0.28 14.86 8.31 -92.71 -0.77 14.09 16 43 H 0.13 5.27 5.62 -2.91 -0.02 5.26 16 44 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -80.66 382.39 6.04 -74.62 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.38 Total: 22.93 kcal Atomic # 6 Polarization: -28.49 SS G_CDS: 5.55 Total: -22.94 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: -1.33 Total: -66.30 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: -0.58 Total: -51.62 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Total: -80.66 6.04 -74.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236934550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.450 kcal (2) G-P(sol) polarization free energy of solvation -80.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds