Wall clock time and date at job start Tue Mar 31 2020 18:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47304 * 2 1 4 4 C 1.53003 * 109.47037 * 239.99774 * 2 1 3 5 5 N 1.46500 * 109.46962 * 65.00124 * 4 2 1 6 6 C 1.46504 * 119.99770 * 269.99875 * 5 4 2 7 7 C 1.34770 * 120.00149 * 90.00003 * 5 4 2 8 8 O 1.21722 * 119.99697 * 0.02562 * 7 5 4 9 9 C 1.46250 * 120.00046 * 179.97438 * 7 5 4 10 10 C 1.35031 * 119.99722 * 180.02562 * 9 7 5 11 11 C 1.46959 * 119.99896 * 180.27394 * 10 9 7 12 12 C 1.40027 * 120.10017 * 359.45143 * 11 10 9 13 13 C 1.37601 * 119.89863 * 179.78912 * 12 11 10 14 14 C 1.39178 * 120.09610 * 0.48118 * 13 12 11 15 15 O 1.35575 * 119.89259 * 179.76441 * 14 13 12 16 16 C 1.34788 * 116.99533 * 174.42515 * 15 14 13 17 17 H 1.08001 * 120.00124 * 5.05799 * 16 15 14 18 18 C 1.38720 * 119.99795 * 185.06035 * 16 15 14 19 19 N 1.31507 * 119.99773 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 119.99984 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47193 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47306 * 119.99699 * 20 18 16 23 23 H 1.48503 * 109.47196 * 239.99770 * 20 18 16 24 24 C 1.39170 * 120.20621 * 359.74800 * 14 13 12 25 25 C 1.37600 * 120.10262 * 0.02562 * 24 14 13 26 26 C 1.50705 * 109.47046 * 120.00059 * 2 1 3 27 27 O 1.20822 * 120.00114 * 119.99412 * 26 2 1 28 28 O 1.34231 * 119.99785 * 300.00026 * 26 2 1 29 29 H 1.09007 * 109.46941 * 300.00014 * 1 2 3 30 30 H 1.08999 * 109.47022 * 59.99876 * 1 2 3 31 31 H 1.09000 * 109.47304 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47037 * 305.00138 * 4 2 1 33 33 H 1.08997 * 109.47324 * 185.00465 * 4 2 1 34 34 H 1.08999 * 109.47078 * 269.99792 * 6 5 4 35 35 H 1.09002 * 109.47281 * 30.00575 * 6 5 4 36 36 H 1.09001 * 109.46981 * 150.00257 * 6 5 4 37 37 H 1.07990 * 120.00180 * 359.97438 * 9 7 5 38 38 H 1.08000 * 120.00105 * 359.97438 * 10 9 7 39 39 H 1.08005 * 120.04944 * 359.97438 * 12 11 10 40 40 H 1.07995 * 119.95289 * 180.22906 * 13 12 11 41 41 H 0.97004 * 119.99419 * 180.02562 * 19 18 16 42 42 H 1.07998 * 119.95118 * 179.97438 * 24 14 13 43 43 H 1.07997 * 120.05056 * 180.02562 * 25 24 14 44 44 H 0.96700 * 116.99813 * 180.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4424 6 6 0.3745 -0.2424 -3.1028 7 6 2.4715 0.9868 -2.9325 8 8 3.5335 1.2171 -2.3841 9 6 2.0848 1.7417 -4.1239 10 6 2.9057 2.6946 -4.6152 11 6 2.5145 3.4574 -5.8089 12 6 1.2962 3.1898 -6.4452 13 6 0.9320 3.9094 -7.5600 14 6 1.7771 4.8952 -8.0612 15 8 1.4163 5.5985 -9.1626 16 6 2.2213 6.6152 -9.5302 17 1 3.1491 6.7865 -9.0046 18 6 1.8580 7.4415 -10.5835 19 7 0.7285 7.2326 -11.2237 20 14 2.9732 8.8510 -11.0924 21 1 4.1744 8.8718 -10.2195 22 1 3.3907 8.6665 -12.5055 23 1 2.2407 10.1356 -10.9564 24 6 2.9911 5.1613 -7.4349 25 6 3.3615 4.4499 -6.3169 26 6 2.0324 -0.7104 1.2305 27 8 2.7269 -1.6929 1.1197 28 8 1.7081 -0.2518 2.4496 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6054 -1.7199 -1.2951 33 1 3.1263 -0.7996 -1.2056 34 1 0.5171 -1.0128 -3.8606 35 1 -0.3485 -0.5886 -2.3641 36 1 0.0042 0.6676 -3.5749 37 1 1.1432 1.5364 -4.6112 38 1 3.8476 2.8996 -4.1281 39 1 0.6419 2.4217 -6.0597 40 1 -0.0091 3.7063 -8.0492 41 1 0.4746 7.8102 -11.9605 42 1 3.6439 5.9268 -7.8276 43 1 4.3036 4.6574 -5.8313 44 1 2.0541 -0.7406 3.2089 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000237568127.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:04 Heat of formation + Delta-G solvation = -112.019400 kcal Electronic energy + Delta-G solvation = -26866.512445 eV Core-core repulsion = 22750.219912 eV Total energy + Delta-G solvation = -4116.292532 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.88315 -39.82015 -39.17179 -37.02893 -36.65484 -36.16283 -33.73505 -33.06997 -32.28327 -30.45824 -28.73171 -27.96206 -26.09815 -25.60160 -25.02315 -22.93877 -22.13023 -21.08804 -20.05702 -18.76755 -18.41340 -18.03206 -17.40475 -17.28220 -17.04245 -16.14829 -15.76626 -15.48571 -14.96221 -14.79379 -14.42124 -14.25075 -13.95079 -13.83929 -13.71273 -13.38645 -13.26480 -13.11237 -12.96402 -12.87792 -12.58235 -12.20549 -11.93537 -11.89113 -11.83820 -11.75421 -11.65919 -11.42143 -11.16397 -11.09653 -10.81634 -10.68036 -10.54813 -9.79721 -9.63090 -9.51814 -8.94768 -8.83129 -8.40918 -7.14296 -6.67605 -4.22271 1.02273 1.83173 2.11034 2.42209 2.53674 3.01878 3.03379 3.09137 3.10212 3.51111 3.80330 4.28428 4.37862 4.48542 4.65903 4.74047 4.86724 4.90125 5.00526 5.01259 5.11494 5.22523 5.24223 5.33735 5.38476 5.46795 5.52950 5.58524 5.62380 5.65352 5.74958 5.98573 6.09175 6.10520 6.22896 6.43933 6.48062 6.58429 6.76488 6.89242 7.10356 7.20349 7.23823 7.32686 7.50161 7.61264 7.77931 8.22086 8.77369 9.44044 10.49022 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.032935 B = 0.001726 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.948386 B =16219.257813 C =16560.094923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 H 0.115 0.885 4 C 0.133 3.867 5 N -0.618 5.618 6 C 0.072 3.928 7 C 0.557 3.443 8 O -0.554 6.554 9 C -0.287 4.287 10 C 0.041 3.959 11 C -0.200 4.200 12 C -0.042 4.042 13 C -0.200 4.200 14 C 0.167 3.833 15 O -0.162 6.162 16 C -0.393 4.393 17 H 0.098 0.902 18 C 0.041 3.959 19 N -0.851 5.851 20 Si 0.945 3.055 21 H -0.264 1.264 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.242 4.242 25 C -0.034 4.034 26 C 0.489 3.511 27 O -0.515 6.515 28 O -0.515 6.515 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.274 0.726 42 H 0.131 0.869 43 H 0.114 0.886 44 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.289 -12.974 19.155 23.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 H 0.133 0.867 4 C 0.010 3.990 5 N -0.351 5.351 6 C -0.071 4.071 7 C 0.351 3.649 8 O -0.434 6.434 9 C -0.308 4.308 10 C 0.022 3.978 11 C -0.201 4.201 12 C -0.060 4.060 13 C -0.219 4.219 14 C 0.111 3.889 15 O -0.063 6.063 16 C -0.468 4.468 17 H 0.115 0.885 18 C -0.165 4.165 19 N -0.484 5.484 20 Si 0.769 3.231 21 H -0.188 1.188 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.261 4.261 25 C -0.053 4.053 26 C 0.331 3.669 27 O -0.403 6.403 28 O -0.327 6.327 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.084 0.916 42 H 0.149 0.851 43 H 0.132 0.868 44 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -2.049 -12.812 18.663 22.730 hybrid contribution 0.680 0.344 0.250 0.802 sum -1.369 -12.468 18.913 22.694 Atomic orbital electron populations 1.21907 0.91728 1.02840 1.03976 1.21480 0.98695 1.02180 0.89829 0.86721 1.21171 1.02391 0.93686 0.81799 1.47626 1.20738 1.38396 1.28388 1.22009 0.84723 1.02408 0.97961 1.18495 0.83096 0.78927 0.84392 1.90782 1.23641 1.67265 1.61749 1.22503 1.03765 1.04043 1.00451 1.22321 0.96352 0.88798 0.90377 1.18454 0.98170 1.03575 0.99879 1.20863 0.94709 0.96771 0.93695 1.20151 1.01121 1.00596 1.00007 1.19616 0.92126 0.91031 0.86172 1.83906 1.47970 1.39479 1.34935 1.21534 1.02819 1.05769 1.16700 0.88457 1.25402 0.97052 0.98524 0.95516 1.70023 1.20884 1.37442 1.20035 0.85578 0.79171 0.79387 0.78954 1.18847 1.19905 1.19901 1.21104 0.99037 1.05894 1.00106 1.20993 0.97272 0.92862 0.94129 1.23363 0.76629 0.82205 0.84711 1.90734 1.35851 1.26363 1.87316 1.84539 1.72194 1.59078 1.16862 0.91102 0.90307 0.92000 0.89722 0.88747 0.92353 0.90849 0.90153 0.85538 0.85974 0.86478 0.86111 0.91627 0.85108 0.86807 0.73145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 8.11 37.16 0.30 -0.60 16 2 C -0.10 -0.86 3.03 -91.76 -0.28 -1.14 16 3 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.13 1.30 4.25 -4.04 -0.02 1.28 16 5 N -0.62 -6.28 2.70 -183.28 -0.49 -6.78 16 6 C 0.07 0.49 9.22 59.85 0.55 1.04 16 7 C 0.56 7.59 7.60 -13.04 -0.10 7.49 16 8 O -0.55 -9.44 15.81 5.17 0.08 -9.36 16 9 C -0.29 -3.76 8.61 -37.50 -0.32 -4.09 16 10 C 0.04 0.61 9.45 -37.19 -0.35 0.26 16 11 C -0.20 -3.31 5.87 -105.03 -0.62 -3.92 16 12 C -0.04 -0.69 9.40 -39.14 -0.37 -1.06 16 13 C -0.20 -3.88 9.97 -39.47 -0.39 -4.28 16 14 C 0.17 3.77 6.66 -38.89 -0.26 3.51 16 15 O -0.16 -4.34 9.74 0.70 0.01 -4.33 16 16 C -0.39 -10.32 9.48 30.91 0.29 -10.02 16 17 H 0.10 2.35 5.18 -52.49 -0.27 2.08 16 18 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 19 N -0.85 -23.58 13.67 55.48 0.76 -22.82 16 20 Si 0.95 19.34 29.55 -169.99 -5.02 14.32 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 C -0.24 -4.93 9.14 -39.47 -0.36 -5.29 16 25 C -0.03 -0.60 9.78 -39.15 -0.38 -0.98 16 26 C 0.49 4.47 7.63 36.01 0.27 4.75 16 27 O -0.51 -6.17 16.68 -18.75 -0.31 -6.48 16 28 O -0.52 -3.47 13.33 -39.26 -0.52 -3.99 16 29 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 30 H 0.08 0.46 5.89 -51.93 -0.31 0.15 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.69 8.07 -51.92 -0.42 0.27 16 33 H 0.09 1.16 7.23 -51.93 -0.38 0.79 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.35 5.98 -51.93 -0.31 0.03 16 36 H 0.08 0.52 6.09 -51.93 -0.32 0.20 16 37 H 0.13 1.40 4.21 -52.49 -0.22 1.18 16 38 H 0.12 1.81 7.52 -52.49 -0.39 1.41 16 39 H 0.12 1.53 6.16 -52.48 -0.32 1.21 16 40 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 41 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 42 H 0.13 2.65 5.62 -52.49 -0.29 2.35 16 43 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.41 1.06 9.10 45.56 0.41 1.48 16 LS Contribution 374.53 15.07 5.64 5.64 Total: -1.00 -33.07 374.53 -6.48 -39.54 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -4.49 Total: 6.33 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -2.13 Total: -12.08 kcal Atomic # 7 Polarization: -29.86 SS G_CDS: 0.26 Total: -29.60 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.75 Total: -24.16 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.07 -6.48 -39.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237568127.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.477 kcal (2) G-P(sol) polarization free energy of solvation -33.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds