Wall clock time and date at job start Tue Mar 31 2020 18:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47304 * 2 1 4 4 C 1.53003 * 109.47037 * 239.99774 * 2 1 3 5 5 N 1.46500 * 109.46962 * 65.00124 * 4 2 1 6 6 C 1.46504 * 119.99770 * 269.99875 * 5 4 2 7 7 C 1.34770 * 120.00149 * 90.00003 * 5 4 2 8 8 O 1.21722 * 119.99697 * 0.02562 * 7 5 4 9 9 C 1.46250 * 120.00046 * 179.97438 * 7 5 4 10 10 C 1.35031 * 119.99722 * 180.02562 * 9 7 5 11 11 C 1.46959 * 119.99896 * 180.27394 * 10 9 7 12 12 C 1.40027 * 120.10017 * 359.45143 * 11 10 9 13 13 C 1.37601 * 119.89863 * 179.78912 * 12 11 10 14 14 C 1.39178 * 120.09610 * 0.48118 * 13 12 11 15 15 O 1.35575 * 119.89259 * 179.76441 * 14 13 12 16 16 C 1.34788 * 116.99533 * 174.42515 * 15 14 13 17 17 H 1.08001 * 120.00124 * 5.05799 * 16 15 14 18 18 C 1.38720 * 119.99795 * 185.06035 * 16 15 14 19 19 N 1.31507 * 119.99773 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 119.99984 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47193 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47306 * 119.99699 * 20 18 16 23 23 H 1.48503 * 109.47196 * 239.99770 * 20 18 16 24 24 C 1.39170 * 120.20621 * 359.74800 * 14 13 12 25 25 C 1.37600 * 120.10262 * 0.02562 * 24 14 13 26 26 C 1.50705 * 109.47046 * 120.00059 * 2 1 3 27 27 O 1.20822 * 120.00114 * 119.99412 * 26 2 1 28 28 O 1.34231 * 119.99785 * 300.00026 * 26 2 1 29 29 H 1.09007 * 109.46941 * 300.00014 * 1 2 3 30 30 H 1.08999 * 109.47022 * 59.99876 * 1 2 3 31 31 H 1.09000 * 109.47304 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47037 * 305.00138 * 4 2 1 33 33 H 1.08997 * 109.47324 * 185.00465 * 4 2 1 34 34 H 1.08999 * 109.47078 * 269.99792 * 6 5 4 35 35 H 1.09002 * 109.47281 * 30.00575 * 6 5 4 36 36 H 1.09001 * 109.46981 * 150.00257 * 6 5 4 37 37 H 1.07990 * 120.00180 * 359.97438 * 9 7 5 38 38 H 1.08000 * 120.00105 * 359.97438 * 10 9 7 39 39 H 1.08005 * 120.04944 * 359.97438 * 12 11 10 40 40 H 1.07995 * 119.95289 * 180.22906 * 13 12 11 41 41 H 0.97004 * 119.99419 * 180.02562 * 19 18 16 42 42 H 1.07998 * 119.95118 * 179.97438 * 24 14 13 43 43 H 1.07997 * 120.05056 * 180.02562 * 25 24 14 44 44 H 0.96700 * 116.99813 * 180.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4424 6 6 0.3745 -0.2424 -3.1028 7 6 2.4715 0.9868 -2.9325 8 8 3.5335 1.2171 -2.3841 9 6 2.0848 1.7417 -4.1239 10 6 2.9057 2.6946 -4.6152 11 6 2.5145 3.4574 -5.8089 12 6 1.2962 3.1898 -6.4452 13 6 0.9320 3.9094 -7.5600 14 6 1.7771 4.8952 -8.0612 15 8 1.4163 5.5985 -9.1626 16 6 2.2213 6.6152 -9.5302 17 1 3.1491 6.7865 -9.0046 18 6 1.8580 7.4415 -10.5835 19 7 0.7285 7.2326 -11.2237 20 14 2.9732 8.8510 -11.0924 21 1 4.1744 8.8718 -10.2195 22 1 3.3907 8.6665 -12.5055 23 1 2.2407 10.1356 -10.9564 24 6 2.9911 5.1613 -7.4349 25 6 3.3615 4.4499 -6.3169 26 6 2.0324 -0.7104 1.2305 27 8 2.7269 -1.6929 1.1197 28 8 1.7081 -0.2518 2.4496 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6054 -1.7199 -1.2951 33 1 3.1263 -0.7996 -1.2056 34 1 0.5171 -1.0128 -3.8606 35 1 -0.3485 -0.5886 -2.3641 36 1 0.0042 0.6676 -3.5749 37 1 1.1432 1.5364 -4.6112 38 1 3.8476 2.8996 -4.1281 39 1 0.6419 2.4217 -6.0597 40 1 -0.0091 3.7063 -8.0492 41 1 0.4746 7.8102 -11.9605 42 1 3.6439 5.9268 -7.8276 43 1 4.3036 4.6574 -5.8313 44 1 2.0541 -0.7406 3.2089 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237568127.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:03 Heat of formation + Delta-G solvation = -133.548335 kcal Electronic energy + Delta-G solvation = -26867.446009 eV Core-core repulsion = 22750.219912 eV Total energy + Delta-G solvation = -4117.226097 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.64146 -40.92406 -40.64278 -38.52488 -37.47005 -36.99687 -34.85031 -34.34472 -33.79244 -31.95408 -29.93188 -28.78708 -27.57028 -26.73997 -25.78159 -24.20114 -23.57874 -22.09683 -21.13148 -20.13878 -19.38340 -19.10215 -18.81191 -18.32378 -18.05682 -16.90531 -16.82166 -16.41230 -16.30960 -16.21950 -15.92925 -15.60156 -15.28287 -14.88503 -14.73486 -14.63977 -14.29646 -14.07653 -13.99695 -13.66575 -13.56261 -13.53233 -13.30748 -13.02711 -12.72976 -12.69995 -12.58823 -12.55660 -12.37963 -12.21051 -12.10679 -12.09088 -11.54654 -11.20175 -11.11423 -10.90322 -10.56618 -9.87764 -9.73072 -8.66808 -8.51863 -6.17688 -0.24909 0.60040 1.12450 1.12592 1.36400 1.45159 1.54000 1.74974 2.15472 2.29177 2.41798 2.86970 3.18891 3.43519 3.58398 3.61003 3.82343 3.95151 4.06900 4.09425 4.22952 4.28907 4.35538 4.40215 4.48466 4.56600 4.66241 4.67309 4.80499 4.84253 4.92472 4.95762 5.00243 5.04677 5.20773 5.24508 5.28535 5.35319 5.49821 5.55447 5.61690 5.65453 5.82090 5.98275 6.11711 6.37169 6.92434 6.92862 7.17522 7.70042 8.70324 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.032935 B = 0.001726 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.948386 B =16219.257813 C =16560.094923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.101 0.899 4 C 0.133 3.867 5 N -0.607 5.607 6 C 0.060 3.940 7 C 0.547 3.453 8 O -0.593 6.593 9 C -0.246 4.246 10 C 0.017 3.983 11 C -0.170 4.170 12 C -0.035 4.035 13 C -0.206 4.206 14 C 0.130 3.870 15 O -0.219 6.219 16 C -0.416 4.416 17 H 0.105 0.895 18 C -0.018 4.018 19 N -0.913 5.913 20 Si 1.018 2.982 21 H -0.252 1.252 22 H -0.268 1.268 23 H -0.268 1.268 24 C -0.250 4.250 25 C -0.041 4.041 26 C 0.494 3.506 27 O -0.549 6.549 28 O -0.510 6.510 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.157 0.843 38 H 0.122 0.878 39 H 0.162 0.838 40 H 0.125 0.875 41 H 0.275 0.725 42 H 0.123 0.877 43 H 0.142 0.858 44 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.852 -14.972 22.050 26.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 H 0.119 0.881 4 C 0.009 3.991 5 N -0.338 5.338 6 C -0.082 4.082 7 C 0.341 3.659 8 O -0.476 6.476 9 C -0.267 4.267 10 C -0.003 4.003 11 C -0.171 4.171 12 C -0.053 4.053 13 C -0.225 4.225 14 C 0.078 3.922 15 O -0.125 6.125 16 C -0.492 4.492 17 H 0.122 0.878 18 C -0.217 4.217 19 N -0.550 5.550 20 Si 0.837 3.163 21 H -0.175 1.175 22 H -0.193 1.193 23 H -0.193 1.193 24 C -0.269 4.269 25 C -0.059 4.059 26 C 0.337 3.663 27 O -0.439 6.439 28 O -0.323 6.323 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.174 0.826 38 H 0.140 0.860 39 H 0.180 0.820 40 H 0.143 0.857 41 H 0.084 0.916 42 H 0.141 0.859 43 H 0.160 0.840 44 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -2.628 -14.869 21.646 26.392 hybrid contribution 0.857 0.480 -0.054 0.984 sum -1.772 -14.389 21.592 26.008 Atomic orbital electron populations 1.21913 0.89370 1.03978 1.04629 1.21413 1.00503 1.00903 0.89062 0.88080 1.21181 1.00815 0.94803 0.82262 1.47678 1.21250 1.36745 1.28106 1.22357 0.83331 1.03438 0.99026 1.18666 0.83046 0.79685 0.84533 1.90782 1.25485 1.68546 1.62817 1.22837 1.03686 1.01281 0.98854 1.22190 0.97394 0.90255 0.90473 1.18765 0.97314 1.01759 0.99252 1.21284 0.95084 0.96789 0.92135 1.20437 1.01029 1.00136 1.00876 1.20204 0.93697 0.91918 0.86419 1.83887 1.49506 1.41362 1.37698 1.21926 1.03357 1.06494 1.17375 0.87766 1.26587 0.98629 1.01138 0.95359 1.70151 1.23509 1.39612 1.21709 0.84534 0.77380 0.75689 0.78680 1.17491 1.19331 1.19319 1.21191 0.98413 1.06278 1.00998 1.21307 0.98713 0.92657 0.93246 1.23444 0.75804 0.81545 0.85488 1.90728 1.37382 1.27965 1.87858 1.84496 1.71828 1.59077 1.16904 0.90633 0.89522 0.90589 0.87693 0.91871 0.91120 0.88228 0.89147 0.82576 0.86044 0.82021 0.85746 0.91607 0.85919 0.84019 0.70989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.11 71.98 0.58 -0.59 16 2 C -0.10 -1.44 3.03 -11.54 -0.04 -1.47 16 3 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 4 C 0.13 2.26 4.25 86.38 0.37 2.63 16 5 N -0.61 -10.09 2.70 -851.99 -2.30 -12.39 16 6 C 0.06 0.49 9.22 127.77 1.18 1.67 16 7 C 0.55 13.18 7.60 86.33 0.66 13.83 16 8 O -0.59 -19.26 15.81 -4.42 -0.07 -19.33 16 9 C -0.25 -5.34 8.61 23.62 0.20 -5.14 16 10 C 0.02 0.43 9.45 23.82 0.23 0.66 16 11 C -0.17 -5.12 5.87 -20.13 -0.12 -5.23 16 12 C -0.04 -1.04 9.40 22.55 0.21 -0.83 16 13 C -0.21 -7.91 9.97 22.34 0.22 -7.69 16 14 C 0.13 6.07 6.66 22.72 0.15 6.22 16 15 O -0.22 -12.55 9.74 -20.39 -0.20 -12.75 16 16 C -0.42 -23.21 9.48 67.94 0.64 -22.56 16 17 H 0.11 5.34 5.18 -2.91 -0.02 5.33 16 18 C -0.02 -1.00 5.49 84.86 0.47 -0.54 16 19 N -0.91 -53.89 13.67 21.62 0.30 -53.59 16 20 Si 1.02 41.29 29.55 68.60 2.03 43.31 16 21 H -0.25 -9.45 7.11 99.48 0.71 -8.75 16 22 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 23 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 24 C -0.25 -10.34 9.14 22.34 0.20 -10.14 16 25 C -0.04 -1.38 9.78 22.55 0.22 -1.16 16 26 C 0.49 8.12 7.63 71.24 0.54 8.66 16 27 O -0.55 -12.51 16.68 21.97 0.37 -12.14 16 28 O -0.51 -5.67 13.33 -51.43 -0.69 -6.36 16 29 H 0.07 0.60 8.11 -2.38 -0.02 0.58 16 30 H 0.09 0.60 5.89 -2.39 -0.01 0.58 16 31 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.10 1.37 8.07 -2.38 -0.02 1.35 16 33 H 0.06 1.51 7.23 -2.39 -0.02 1.49 16 34 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.10 0.37 5.98 -2.39 -0.01 0.35 16 36 H 0.09 0.61 6.09 -2.39 -0.01 0.59 16 37 H 0.16 2.43 4.21 -2.92 -0.01 2.42 16 38 H 0.12 3.27 7.52 -2.91 -0.02 3.25 16 39 H 0.16 3.29 6.16 -2.91 -0.02 3.27 16 40 H 0.12 4.61 8.06 -2.91 -0.02 4.58 16 41 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 42 H 0.12 5.18 5.62 -2.91 -0.02 5.16 16 43 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 44 H 0.43 1.24 9.10 -74.06 -0.67 0.57 16 Total: -1.00 -78.64 374.53 5.55 -73.09 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.39 Total: 21.84 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 5.72 Total: -21.68 kcal Atomic # 7 Polarization: -63.98 SS G_CDS: -2.00 Total: -65.98 kcal Atomic # 8 Polarization: -50.00 SS G_CDS: -0.59 Total: -50.58 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Total: -78.64 5.55 -73.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237568127.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.460 kcal (2) G-P(sol) polarization free energy of solvation -78.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds