Wall clock time and date at job start Tue Mar 31 2020 17:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 117.00201 * 2 1 4 4 O 1.20824 * 119.99891 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00269 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.44653 * 60.03133 * 5 3 2 7 7 C 1.53038 * 109.46142 * 300.06994 * 5 3 2 8 8 C 1.53197 * 109.31499 * 178.61479 * 7 5 3 9 9 N 1.46921 * 108.77620 * 54.62954 * 8 7 5 10 10 S 1.65602 * 120.62981 * 126.39113 * 9 8 7 11 11 O 1.42098 * 104.27721 * 206.07155 * 10 9 8 12 12 O 1.42102 * 104.27873 * 333.93291 * 10 9 8 13 13 C 1.81403 * 104.44676 * 90.00173 * 10 9 8 14 14 C 1.53000 * 109.47284 * 179.97438 * 13 10 9 15 15 C 1.53000 * 109.47377 * 179.97438 * 14 13 10 16 16 C 1.50703 * 109.47098 * 179.97438 * 15 14 13 17 17 H 1.07996 * 119.99643 * 0.02562 * 16 15 14 18 18 C 1.37870 * 119.99629 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99473 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00486 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47203 * 89.99798 * 20 18 16 22 22 H 1.48499 * 109.47160 * 209.99920 * 20 18 16 23 23 H 1.48506 * 109.46883 * 329.99868 * 20 18 16 24 24 C 1.46929 * 118.74120 * 306.39816 * 9 8 7 25 25 C 1.53039 * 109.46239 * 179.97438 * 5 3 2 26 26 H 1.09002 * 109.49751 * 301.33944 * 25 5 3 27 27 C 1.53003 * 109.49634 * 61.40510 * 25 5 3 28 28 H 1.08999 * 109.46836 * 300.00078 * 1 2 3 29 29 H 1.08998 * 109.46957 * 59.99667 * 1 2 3 30 30 H 1.09003 * 109.46846 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.49750 * 298.56074 * 7 5 3 32 32 H 1.08998 * 109.50003 * 58.62938 * 7 5 3 33 33 H 1.08999 * 109.58911 * 174.42446 * 8 7 5 34 34 H 1.08997 * 109.58298 * 294.84480 * 8 7 5 35 35 H 1.08992 * 109.47120 * 300.00386 * 13 10 9 36 36 H 1.09002 * 109.47101 * 60.00272 * 13 10 9 37 37 H 1.09001 * 109.46838 * 300.00476 * 14 13 10 38 38 H 1.09002 * 109.46786 * 60.00132 * 14 13 10 39 39 H 1.08992 * 109.47167 * 300.00525 * 15 14 13 40 40 H 1.08998 * 109.46489 * 60.00434 * 15 14 13 41 41 H 0.97004 * 119.99661 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.58310 * 293.81808 * 24 9 8 43 43 H 1.08997 * 109.58897 * 173.39768 * 24 9 8 44 44 H 1.09001 * 109.47302 * 59.93174 * 27 25 5 45 45 H 1.08994 * 109.46897 * 179.97438 * 27 25 5 46 46 H 1.09001 * 109.46854 * 299.93344 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9560 0.7810 -0.8896 7 6 4.1129 0.5798 1.2497 8 6 5.6438 0.6317 1.2295 9 7 6.0677 2.0308 1.0832 10 16 7.1317 2.7067 2.1572 11 8 6.8381 4.0964 2.1138 12 8 6.9498 1.9563 3.3501 13 6 8.7662 2.3789 1.4420 14 6 9.8480 2.9624 2.3532 15 6 11.2267 2.6854 1.7504 16 6 12.2921 3.2608 2.6476 17 1 12.0136 3.7724 3.5569 18 6 13.6221 3.1339 2.3073 19 7 14.5519 3.6356 3.0906 20 14 14.1036 2.2495 0.7340 21 1 14.1675 3.2259 -0.3831 22 1 15.4332 1.6124 0.9113 23 1 13.0926 1.2070 0.4229 24 6 5.5296 2.8189 -0.0340 25 6 4.0000 2.7425 -0.0002 26 1 3.5910 3.2423 -0.8783 27 6 3.4822 3.4287 1.2655 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.7434 1.0885 2.1401 32 1 3.7837 -0.4592 1.2613 33 1 6.0355 0.2268 2.1626 34 1 6.0181 0.0467 0.3894 35 1 8.9121 1.3029 1.3472 36 1 8.8318 2.8426 0.4578 37 1 9.7018 4.0385 2.4476 38 1 9.7825 2.4991 3.3377 39 1 11.3725 1.6094 1.6562 40 1 11.2923 3.1485 0.7658 41 1 15.4877 3.5466 2.8510 42 1 5.8947 2.4123 -0.9771 43 1 5.8460 3.8572 0.0655 44 1 3.8914 2.9286 2.1433 45 1 3.7917 4.4738 1.2647 46 1 2.3939 3.3726 1.2898 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248967141.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:58 Heat of formation + Delta-G solvation = -168.373854 kcal Electronic energy + Delta-G solvation = -27626.854123 eV Core-core repulsion = 23643.561830 eV Total energy + Delta-G solvation = -3983.292294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.23897 -39.00471 -37.06530 -36.83001 -35.82104 -34.82580 -33.50266 -32.22689 -32.20970 -28.65492 -28.37190 -27.19938 -25.57107 -23.57841 -23.36408 -21.79119 -20.50758 -19.75538 -18.69737 -18.07443 -17.76382 -16.97805 -16.88409 -16.51603 -16.20268 -16.06577 -15.21328 -15.03098 -14.68629 -14.30264 -14.19026 -14.15951 -14.11558 -13.44765 -13.16625 -12.92785 -12.71595 -12.43948 -12.36493 -12.20700 -12.16737 -12.10049 -11.92308 -11.68215 -11.58770 -11.55356 -11.46969 -11.13244 -11.00818 -10.96362 -10.90446 -10.81620 -10.44406 -10.11302 -9.89535 -9.74113 -9.29990 -9.09238 -8.60081 -6.09637 -4.09032 0.31844 1.82134 2.30471 2.63292 3.25376 3.32969 3.34806 3.91541 4.06252 4.16473 4.27417 4.37588 4.38979 4.59914 4.68850 4.69414 4.77009 4.77762 4.91305 5.02670 5.03809 5.09623 5.22695 5.23921 5.25528 5.31887 5.39916 5.43671 5.52623 5.70498 5.74519 5.76253 5.81003 5.99002 6.05714 6.10761 6.24375 6.27511 6.39572 6.64814 7.10591 7.24666 7.38137 7.69594 8.46295 8.94747 9.51344 11.03616 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.029561 B = 0.002444 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.950778 B =11454.662999 C =11720.487779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.465 3.535 4 O -0.500 6.500 5 C -0.073 4.073 6 H 0.112 0.888 7 C -0.126 4.126 8 C 0.120 3.880 9 N -1.005 6.005 10 S 2.597 3.403 11 O -0.954 6.954 12 O -0.957 6.957 13 C -0.615 4.615 14 C -0.098 4.098 15 C -0.004 4.004 16 C -0.527 4.527 17 H 0.075 0.925 18 C 0.067 3.933 19 N -0.900 5.900 20 Si 0.881 3.119 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.266 1.266 24 C 0.122 3.878 25 C -0.085 4.085 26 H 0.090 0.910 27 C -0.161 4.161 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.020 0.980 40 H 0.015 0.985 41 H 0.264 0.736 42 H 0.072 0.928 43 H 0.103 0.897 44 H 0.054 0.946 45 H 0.063 0.937 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.136 -9.278 -10.163 30.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.308 3.692 4 O -0.387 6.387 5 C -0.093 4.093 6 H 0.130 0.870 7 C -0.165 4.165 8 C -0.006 4.006 9 N -0.842 5.842 10 S 2.694 3.306 11 O -0.944 6.944 12 O -0.947 6.947 13 C -0.747 4.747 14 C -0.137 4.137 15 C -0.043 4.043 16 C -0.565 4.565 17 H 0.093 0.907 18 C -0.135 4.135 19 N -0.538 5.538 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.191 1.191 24 C -0.003 4.003 25 C -0.105 4.105 26 H 0.108 0.892 27 C -0.218 4.218 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.092 0.908 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.038 0.962 40 H 0.034 0.966 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.121 0.879 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -27.437 -8.516 -9.337 30.207 hybrid contribution 0.545 -0.703 -1.427 1.681 sum -26.892 -9.219 -10.764 30.398 Atomic orbital electron populations 1.23268 0.76361 1.03712 1.02556 1.86513 1.23404 1.33604 1.84053 1.23849 0.92056 0.81255 0.72061 1.90634 1.67189 1.36122 1.44742 1.21111 0.86754 0.99341 1.02056 0.87041 1.21929 0.96216 1.01512 0.96854 1.21434 0.94086 0.81473 1.03572 1.57909 1.60409 1.20918 1.44922 1.05471 0.76502 0.74238 0.74351 1.93570 1.83134 1.31466 1.86212 1.93565 1.85148 1.72613 1.43377 1.30656 1.20268 1.11226 1.12516 1.21318 0.94786 1.00455 0.97181 1.19527 0.91256 0.97012 0.96474 1.21131 0.89957 1.36781 1.08659 0.90736 1.25034 0.96533 0.95106 0.96804 1.69916 1.00547 1.45694 1.37674 0.86767 0.77955 0.80489 0.83982 1.20223 1.21262 1.19058 1.21533 0.92707 0.97052 0.89037 1.21308 0.95403 0.92758 1.01011 0.89154 1.22085 1.02486 1.00875 0.96374 0.91878 0.91928 0.88083 0.90194 0.89317 0.88002 0.90824 0.85443 0.85435 0.91023 0.91028 0.96184 0.96622 0.92620 0.90972 0.87907 0.92705 0.91779 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.86 10.44 -39.26 -0.41 -3.27 16 3 C 0.46 4.20 6.97 36.01 0.25 4.45 16 4 O -0.50 -5.74 13.50 -18.75 -0.25 -5.99 16 5 C -0.07 -0.54 2.37 -91.73 -0.22 -0.76 16 6 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 7 C -0.13 -0.93 4.96 -26.61 -0.13 -1.07 16 8 C 0.12 0.94 6.43 -3.71 -0.02 0.91 16 9 N -1.00 -9.91 2.66 -113.52 -0.30 -10.21 16 10 S 2.60 35.67 5.45 -107.50 -0.59 35.08 16 11 O -0.95 -15.63 16.59 -57.54 -0.95 -16.59 16 12 O -0.96 -15.66 16.59 -57.54 -0.95 -16.62 16 13 C -0.62 -8.54 6.18 37.16 0.23 -8.31 16 14 C -0.10 -1.88 5.16 -26.73 -0.14 -2.02 16 15 C 0.00 -0.09 4.04 -27.88 -0.11 -0.21 16 16 C -0.53 -14.93 9.66 -34.44 -0.33 -15.26 16 17 H 0.07 2.26 7.99 -52.49 -0.42 1.85 16 18 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 19 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 20 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 24 C 0.12 1.03 5.82 -3.71 -0.02 1.01 16 25 C -0.08 -0.73 2.36 -90.50 -0.21 -0.94 16 26 H 0.09 0.72 8.07 -51.93 -0.42 0.30 16 27 C -0.16 -1.74 8.40 37.16 0.31 -1.43 16 28 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 29 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.71 6.34 -51.93 -0.33 0.38 16 32 H 0.09 0.51 8.08 -51.93 -0.42 0.09 16 33 H 0.10 0.86 6.86 -51.93 -0.36 0.50 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.13 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.13 1.51 8.14 -51.92 -0.42 1.09 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 40 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.10 0.95 6.86 -51.93 -0.36 0.59 16 44 H 0.05 0.63 5.98 -51.93 -0.31 0.32 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.07 0.85 5.64 -51.93 -0.29 0.56 16 LS Contribution 374.22 15.07 5.64 5.64 Total: -1.00 -36.27 374.22 -8.63 -44.90 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -7.49 Total: -2.20 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: 0.57 Total: -20.52 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.47 Total: -37.01 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -2.57 Total: -42.47 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Atomic # 16 Polarization: 35.67 SS G_CDS: -0.59 Total: 35.08 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.27 -8.63 -44.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248967141.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.471 kcal (2) G-P(sol) polarization free energy of solvation -36.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds