Wall clock time and date at job start Tue Mar 31 2020 18:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 117.00235 * 2 1 4 4 O 1.20830 * 120.00084 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00027 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.44584 * 59.96651 * 5 3 2 7 7 C 1.53041 * 109.45893 * 299.99955 * 5 3 2 8 8 C 1.53191 * 109.31215 * 178.61619 * 7 5 3 9 9 N 1.46925 * 108.77612 * 54.63216 * 8 7 5 10 10 S 1.65599 * 120.62740 * 126.36792 * 9 8 7 11 11 O 1.42105 * 104.27797 * 206.07461 * 10 9 8 12 12 O 1.42101 * 104.27901 * 333.93169 * 10 9 8 13 13 C 1.81397 * 104.44825 * 90.00349 * 10 9 8 14 14 C 1.53009 * 109.47235 * 179.97438 * 13 10 9 15 15 C 1.52995 * 109.46990 * 179.97438 * 14 13 10 16 16 C 1.50700 * 109.47073 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99821 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00285 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00411 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99871 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47489 * 89.99584 * 20 18 16 22 22 H 1.48501 * 109.46989 * 209.99991 * 20 18 16 23 23 H 1.48501 * 109.47070 * 329.99728 * 20 18 16 24 24 C 1.46925 * 118.74022 * 306.64692 * 9 8 7 25 25 C 1.52761 * 109.00700 * 53.30724 * 24 9 8 26 26 H 1.09007 * 109.38609 * 65.51879 * 25 24 9 27 27 C 1.53003 * 109.56145 * 185.55349 * 25 24 9 28 28 H 1.09001 * 109.46949 * 59.99927 * 1 2 3 29 29 H 1.08994 * 109.47370 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46975 * 300.00237 * 1 2 3 31 31 H 1.08997 * 109.49664 * 58.66502 * 7 5 3 32 32 H 1.08999 * 109.50038 * 298.56595 * 7 5 3 33 33 H 1.09000 * 109.58504 * 294.84844 * 8 7 5 34 34 H 1.08997 * 109.58590 * 174.42266 * 8 7 5 35 35 H 1.09004 * 109.47032 * 299.99803 * 13 10 9 36 36 H 1.09000 * 109.47124 * 60.00075 * 13 10 9 37 37 H 1.08995 * 109.47216 * 300.00010 * 14 13 10 38 38 H 1.09000 * 109.46805 * 60.00123 * 14 13 10 39 39 H 1.08995 * 109.47375 * 300.00190 * 15 14 13 40 40 H 1.09000 * 109.47020 * 60.00531 * 15 14 13 41 41 H 0.96996 * 120.00603 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.58276 * 173.14177 * 24 9 8 43 43 H 1.08993 * 109.58751 * 293.56745 * 24 9 8 44 44 H 1.08999 * 109.47000 * 179.97438 * 27 25 24 45 45 H 1.09002 * 109.47188 * 299.96192 * 27 25 24 46 46 H 1.08994 * 109.47439 * 59.96312 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9553 0.7802 -0.8906 7 6 4.1138 0.5807 1.2487 8 6 5.6446 0.6325 1.2274 9 7 6.0685 2.0315 1.0797 10 16 7.1328 2.7084 2.1528 11 8 6.8391 4.0980 2.1084 12 8 6.9512 1.9590 3.3464 13 6 8.7671 2.3800 1.4374 14 6 9.8491 2.9644 2.3478 15 6 11.2275 2.6868 1.7447 16 6 12.2933 3.2629 2.6410 17 1 12.0152 3.7753 3.5501 18 6 13.6233 3.1349 2.3010 19 7 14.5534 3.6372 3.0834 20 14 14.1043 2.2479 0.7289 21 1 14.1687 3.2226 -0.3896 22 1 15.4336 1.6104 0.9072 23 1 13.0929 1.2055 0.4194 24 6 5.5253 2.8204 -0.0344 25 6 4.0000 2.7424 -0.0021 26 1 3.6317 3.2317 0.8997 27 6 3.4250 3.4435 -1.2345 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.7850 -0.4584 1.2611 32 1 3.7449 1.0900 2.1390 33 1 6.0184 0.0469 0.3875 34 1 6.0369 0.2284 2.1606 35 1 8.9130 1.3038 1.3434 36 1 8.8323 2.8429 0.4527 37 1 9.7031 4.0404 2.4413 38 1 9.7840 2.5018 3.3326 39 1 11.3734 1.6107 1.6514 40 1 11.2929 3.1490 0.7597 41 1 15.4891 3.5475 2.8441 42 1 5.8390 3.8594 0.0665 43 1 5.8891 2.4169 -0.9793 44 1 2.3368 3.3866 -1.2102 45 1 3.7341 4.4888 -1.2352 46 1 3.7945 2.9548 -2.1360 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248967144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:02 Heat of formation + Delta-G solvation = -171.122597 kcal Electronic energy + Delta-G solvation = -27407.405095 eV Core-core repulsion = 23423.993607 eV Total energy + Delta-G solvation = -3983.411488 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.21332 -38.86844 -37.07808 -36.86196 -35.83419 -34.82636 -33.72217 -32.53766 -32.22599 -28.57379 -28.38018 -27.10780 -25.61556 -23.57951 -22.62392 -21.97646 -20.50859 -20.31516 -18.83668 -18.11334 -17.66294 -17.05617 -16.91444 -16.68898 -16.27065 -15.98562 -15.22901 -14.73302 -14.53043 -14.42761 -14.27412 -14.16199 -14.07162 -13.55536 -12.93652 -12.88546 -12.74092 -12.51698 -12.42294 -12.37099 -12.20536 -12.15893 -11.94226 -11.83046 -11.64511 -11.58818 -11.35519 -11.16349 -11.07775 -10.99716 -10.96268 -10.84970 -10.41706 -10.11345 -9.89678 -9.75558 -9.30121 -9.11074 -8.60057 -6.09545 -4.08974 0.30915 1.80644 2.29465 2.61734 3.25441 3.33039 3.34858 3.90676 4.04183 4.14065 4.28427 4.34370 4.39037 4.57335 4.65060 4.68622 4.76419 4.78315 4.94835 5.02568 5.03896 5.09298 5.16944 5.19882 5.23964 5.29810 5.34656 5.42476 5.44088 5.66618 5.70733 5.72374 5.77599 5.94254 5.98578 6.10403 6.19742 6.24428 6.36885 6.64916 7.10690 7.24747 7.37278 7.69642 8.46329 8.94820 9.51393 11.03698 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.027161 B = 0.002396 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.659286 B =11683.778755 C =11735.339692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.465 3.535 4 O -0.499 6.499 5 C -0.074 4.074 6 H 0.112 0.888 7 C -0.124 4.124 8 C 0.119 3.881 9 N -1.007 6.007 10 S 2.598 3.402 11 O -0.955 6.955 12 O -0.956 6.956 13 C -0.614 4.614 14 C -0.098 4.098 15 C -0.004 4.004 16 C -0.527 4.527 17 H 0.075 0.925 18 C 0.067 3.933 19 N -0.900 5.900 20 Si 0.881 3.119 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.266 1.266 24 C 0.122 3.878 25 C -0.087 4.087 26 H 0.086 0.914 27 C -0.162 4.162 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.020 0.980 40 H 0.016 0.984 41 H 0.264 0.736 42 H 0.103 0.897 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.062 0.938 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.219 -9.328 -10.789 30.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.308 3.692 4 O -0.386 6.386 5 C -0.093 4.093 6 H 0.130 0.870 7 C -0.163 4.163 8 C -0.007 4.007 9 N -0.844 5.844 10 S 2.695 3.305 11 O -0.946 6.946 12 O -0.947 6.947 13 C -0.746 4.746 14 C -0.137 4.137 15 C -0.043 4.043 16 C -0.565 4.565 17 H 0.093 0.907 18 C -0.135 4.135 19 N -0.538 5.538 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.191 1.191 24 C -0.003 4.003 25 C -0.107 4.107 26 H 0.104 0.896 27 C -0.220 4.220 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.121 0.879 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.038 0.962 40 H 0.034 0.966 41 H 0.074 0.926 42 H 0.121 0.879 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.081 0.919 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -27.511 -8.570 -9.961 30.488 hybrid contribution 0.547 -0.694 -1.394 1.650 sum -26.964 -9.263 -11.355 30.689 Atomic orbital electron populations 1.23272 0.76330 1.03735 1.02573 1.86513 1.23429 1.33573 1.84025 1.23844 0.92037 0.81253 0.72034 1.90613 1.67214 1.36047 1.44774 1.21150 0.86786 0.99266 1.02075 0.86987 1.21889 0.96190 1.01665 0.96553 1.21451 0.94096 0.81492 1.03622 1.57948 1.60373 1.20916 1.45130 1.05453 0.76543 0.74173 0.74316 1.93570 1.83192 1.31567 1.86246 1.93564 1.85148 1.72632 1.43317 1.30647 1.20141 1.11254 1.12516 1.21321 0.94766 1.00463 0.97200 1.19526 0.91253 0.97015 0.96475 1.21132 0.89952 1.36737 1.08713 0.90735 1.25033 0.96531 0.95110 0.96795 1.69908 1.00542 1.45677 1.37706 0.86768 0.77952 0.80500 0.83977 1.20226 1.21267 1.19059 1.21461 0.92639 0.97013 0.89177 1.21276 0.95391 0.92755 1.01305 0.89552 1.22086 1.03413 1.00632 0.95848 0.91916 0.88067 0.91854 0.89153 0.90548 0.90788 0.87927 0.85401 0.85414 0.91012 0.90997 0.96179 0.96619 0.92614 0.87930 0.90957 0.89855 0.91893 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.85 10.44 -39.26 -0.41 -3.26 16 3 C 0.47 4.22 6.96 36.01 0.25 4.47 16 4 O -0.50 -5.71 13.33 -18.75 -0.25 -5.96 16 5 C -0.07 -0.56 2.14 -91.73 -0.20 -0.75 16 6 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 7 C -0.12 -0.92 5.30 -26.61 -0.14 -1.06 16 8 C 0.12 0.94 6.43 -3.71 -0.02 0.92 16 9 N -1.01 -10.12 3.23 -113.77 -0.37 -10.49 16 10 S 2.60 35.87 5.45 -107.50 -0.59 35.29 16 11 O -0.96 -15.93 16.58 -57.54 -0.95 -16.89 16 12 O -0.96 -15.70 16.59 -57.54 -0.95 -16.66 16 13 C -0.61 -8.52 6.18 37.16 0.23 -8.29 16 14 C -0.10 -1.88 5.16 -26.73 -0.14 -2.02 16 15 C 0.00 -0.09 4.04 -27.89 -0.11 -0.21 16 16 C -0.53 -14.92 9.66 -34.44 -0.33 -15.26 16 17 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 18 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 19 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 20 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 24 C 0.12 1.07 5.69 -3.93 -0.02 1.05 16 25 C -0.09 -0.77 2.04 -90.72 -0.19 -0.96 16 26 H 0.09 0.93 8.13 -51.92 -0.42 0.51 16 27 C -0.16 -1.32 8.86 37.16 0.33 -0.99 16 28 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 31 H 0.09 0.52 8.08 -51.93 -0.42 0.10 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.87 6.86 -51.93 -0.36 0.51 16 35 H 0.13 1.51 8.14 -51.92 -0.42 1.09 16 36 H 0.13 1.52 8.14 -51.92 -0.42 1.09 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 40 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.10 0.98 6.85 -51.93 -0.36 0.63 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.80 5.41 -51.93 -0.28 0.52 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 378.52 15.07 5.70 5.70 Total: -1.00 -36.36 378.52 -8.77 -45.13 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -7.68 Total: -2.65 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: 0.63 Total: -19.99 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.41 Total: -37.29 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -2.57 Total: -42.77 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Atomic # 16 Polarization: 35.87 SS G_CDS: -0.59 Total: 35.29 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.36 -8.77 -45.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248967144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.990 kcal (2) G-P(sol) polarization free energy of solvation -36.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds