Wall clock time and date at job start Tue Mar 31 2020 18:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 117.00235 * 2 1 4 4 O 1.20830 * 120.00084 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00027 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.44584 * 59.96651 * 5 3 2 7 7 C 1.53041 * 109.45893 * 299.99955 * 5 3 2 8 8 C 1.53191 * 109.31215 * 178.61619 * 7 5 3 9 9 N 1.46925 * 108.77612 * 54.63216 * 8 7 5 10 10 S 1.65599 * 120.62740 * 126.36792 * 9 8 7 11 11 O 1.42105 * 104.27797 * 206.07461 * 10 9 8 12 12 O 1.42101 * 104.27901 * 333.93169 * 10 9 8 13 13 C 1.81397 * 104.44825 * 90.00349 * 10 9 8 14 14 C 1.53009 * 109.47235 * 179.97438 * 13 10 9 15 15 C 1.52995 * 109.46990 * 179.97438 * 14 13 10 16 16 C 1.50700 * 109.47073 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99821 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00285 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00411 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99871 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47489 * 89.99584 * 20 18 16 22 22 H 1.48501 * 109.46989 * 209.99991 * 20 18 16 23 23 H 1.48501 * 109.47070 * 329.99728 * 20 18 16 24 24 C 1.46925 * 118.74022 * 306.64692 * 9 8 7 25 25 C 1.52761 * 109.00700 * 53.30724 * 24 9 8 26 26 H 1.09007 * 109.38609 * 65.51879 * 25 24 9 27 27 C 1.53003 * 109.56145 * 185.55349 * 25 24 9 28 28 H 1.09001 * 109.46949 * 59.99927 * 1 2 3 29 29 H 1.08994 * 109.47370 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46975 * 300.00237 * 1 2 3 31 31 H 1.08997 * 109.49664 * 58.66502 * 7 5 3 32 32 H 1.08999 * 109.50038 * 298.56595 * 7 5 3 33 33 H 1.09000 * 109.58504 * 294.84844 * 8 7 5 34 34 H 1.08997 * 109.58590 * 174.42266 * 8 7 5 35 35 H 1.09004 * 109.47032 * 299.99803 * 13 10 9 36 36 H 1.09000 * 109.47124 * 60.00075 * 13 10 9 37 37 H 1.08995 * 109.47216 * 300.00010 * 14 13 10 38 38 H 1.09000 * 109.46805 * 60.00123 * 14 13 10 39 39 H 1.08995 * 109.47375 * 300.00190 * 15 14 13 40 40 H 1.09000 * 109.47020 * 60.00531 * 15 14 13 41 41 H 0.96996 * 120.00603 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.58276 * 173.14177 * 24 9 8 43 43 H 1.08993 * 109.58751 * 293.56745 * 24 9 8 44 44 H 1.08999 * 109.47000 * 179.97438 * 27 25 24 45 45 H 1.09002 * 109.47188 * 299.96192 * 27 25 24 46 46 H 1.08994 * 109.47439 * 59.96312 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9553 0.7802 -0.8906 7 6 4.1138 0.5807 1.2487 8 6 5.6446 0.6325 1.2274 9 7 6.0685 2.0315 1.0797 10 16 7.1328 2.7084 2.1528 11 8 6.8391 4.0980 2.1084 12 8 6.9512 1.9590 3.3464 13 6 8.7671 2.3800 1.4374 14 6 9.8491 2.9644 2.3478 15 6 11.2275 2.6868 1.7447 16 6 12.2933 3.2629 2.6410 17 1 12.0152 3.7753 3.5501 18 6 13.6233 3.1349 2.3010 19 7 14.5534 3.6372 3.0834 20 14 14.1043 2.2479 0.7289 21 1 14.1687 3.2226 -0.3896 22 1 15.4336 1.6104 0.9072 23 1 13.0929 1.2055 0.4194 24 6 5.5253 2.8204 -0.0344 25 6 4.0000 2.7424 -0.0021 26 1 3.6317 3.2317 0.8997 27 6 3.4250 3.4435 -1.2345 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.7850 -0.4584 1.2611 32 1 3.7449 1.0900 2.1390 33 1 6.0184 0.0469 0.3875 34 1 6.0369 0.2284 2.1606 35 1 8.9130 1.3038 1.3434 36 1 8.8323 2.8429 0.4527 37 1 9.7031 4.0404 2.4413 38 1 9.7840 2.5018 3.3326 39 1 11.3734 1.6107 1.6514 40 1 11.2929 3.1490 0.7597 41 1 15.4891 3.5475 2.8441 42 1 5.8390 3.8594 0.0665 43 1 5.8891 2.4169 -0.9793 44 1 2.3368 3.3866 -1.2102 45 1 3.7341 4.4888 -1.2352 46 1 3.7945 2.9548 -2.1360 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000248967144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:01 Heat of formation + Delta-G solvation = -196.916390 kcal Electronic energy + Delta-G solvation = -27408.523598 eV Core-core repulsion = 23423.993607 eV Total energy + Delta-G solvation = -3984.529991 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.86747 -39.52032 -38.26401 -37.53930 -37.03161 -36.48947 -34.43966 -34.23703 -33.16481 -30.13989 -29.09131 -27.69460 -26.32599 -25.29025 -23.29131 -22.64229 -22.14177 -21.03448 -19.82345 -18.95623 -18.86366 -18.49553 -17.71337 -17.42720 -17.24406 -17.15521 -16.22357 -16.21081 -15.59214 -15.30081 -15.10632 -15.02103 -14.87097 -14.68517 -14.24526 -14.03174 -13.64027 -13.57403 -13.50673 -13.26487 -13.21298 -13.17654 -13.00080 -12.91990 -12.68341 -12.63983 -12.53353 -12.44800 -11.98423 -11.83419 -11.82297 -11.68860 -11.63323 -11.48438 -11.40212 -11.22586 -11.10515 -10.76720 -9.93642 -8.28987 -6.35273 -0.77638 1.14571 1.38127 1.41020 1.52663 1.66304 1.76847 2.37584 2.83954 3.06073 3.13993 3.42125 3.61098 3.71256 3.74795 3.90163 3.98442 4.04808 4.22406 4.31681 4.32999 4.35362 4.36073 4.53839 4.61145 4.61360 4.69959 4.72998 4.73860 4.84741 4.87235 4.87866 4.96250 5.03381 5.12753 5.14042 5.31870 5.33877 5.35174 5.46978 5.55274 5.63443 5.67440 6.25882 6.73128 6.73312 7.29364 8.87997 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.027161 B = 0.002396 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.659286 B =11683.778755 C =11735.339692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.464 3.536 4 O -0.531 6.531 5 C -0.070 4.070 6 H 0.146 0.854 7 C -0.122 4.122 8 C 0.111 3.889 9 N -0.999 5.999 10 S 2.611 3.389 11 O -0.992 6.992 12 O -0.989 6.989 13 C -0.604 4.604 14 C -0.105 4.105 15 C -0.004 4.004 16 C -0.545 4.545 17 H 0.027 0.973 18 C -0.002 4.002 19 N -0.953 5.953 20 Si 0.958 3.042 21 H -0.265 1.265 22 H -0.286 1.286 23 H -0.235 1.235 24 C 0.118 3.882 25 C -0.087 4.087 26 H 0.054 0.946 27 C -0.158 4.158 28 H 0.062 0.938 29 H 0.130 0.870 30 H 0.055 0.945 31 H 0.113 0.887 32 H 0.051 0.949 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.158 0.842 36 H 0.156 0.844 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.034 0.966 40 H 0.032 0.968 41 H 0.267 0.733 42 H 0.090 0.910 43 H 0.112 0.888 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.937 -12.218 -14.437 33.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.309 3.691 4 O -0.421 6.421 5 C -0.089 4.089 6 H 0.163 0.837 7 C -0.161 4.161 8 C -0.013 4.013 9 N -0.838 5.838 10 S 2.709 3.291 11 O -0.982 6.982 12 O -0.979 6.979 13 C -0.736 4.736 14 C -0.144 4.144 15 C -0.043 4.043 16 C -0.583 4.583 17 H 0.046 0.954 18 C -0.198 4.198 19 N -0.594 5.594 20 Si 0.780 3.220 21 H -0.190 1.190 22 H -0.212 1.212 23 H -0.158 1.158 24 C -0.007 4.007 25 C -0.108 4.108 26 H 0.072 0.928 27 C -0.215 4.215 28 H 0.081 0.919 29 H 0.148 0.852 30 H 0.074 0.926 31 H 0.131 0.869 32 H 0.070 0.930 33 H 0.133 0.867 34 H 0.114 0.886 35 H 0.176 0.824 36 H 0.174 0.826 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.075 0.925 42 H 0.108 0.892 43 H 0.130 0.870 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -28.259 -11.469 -13.592 33.389 hybrid contribution 0.667 0.240 -0.161 0.727 sum -27.592 -11.228 -13.753 32.811 Atomic orbital electron populations 1.23508 0.75175 1.05583 1.02264 1.86502 1.24618 1.32856 1.83607 1.24188 0.92703 0.81100 0.71131 1.90613 1.68019 1.37115 1.46317 1.21200 0.85772 0.98455 1.03430 0.83683 1.21891 0.96016 1.02662 0.95516 1.21772 0.94174 0.80269 1.05086 1.57616 1.59299 1.22018 1.44846 1.04736 0.76957 0.73140 0.74226 1.93522 1.83886 1.33982 1.86855 1.93519 1.85766 1.73017 1.45620 1.30528 1.17575 1.13112 1.12359 1.21188 0.94979 1.00299 0.97983 1.19500 0.91372 0.97362 0.96037 1.21571 0.92029 1.36491 1.08216 0.95429 1.26163 0.96351 0.96113 1.01223 1.70089 1.01113 1.47727 1.40421 0.85556 0.78088 0.79826 0.78552 1.18973 1.21235 1.15834 1.21671 0.92278 0.96660 0.90043 1.21228 0.95599 0.93727 1.00238 0.92784 1.22024 1.02281 1.00737 0.96476 0.91916 0.85152 0.92568 0.86888 0.92975 0.86725 0.88643 0.82372 0.82562 0.92216 0.92077 0.94729 0.94984 0.92458 0.89177 0.87010 0.91577 0.92228 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.36 -5.00 10.44 -51.41 -0.54 -5.53 16 3 C 0.46 7.78 6.96 71.24 0.50 8.28 16 4 O -0.53 -12.14 13.33 21.95 0.29 -11.84 16 5 C -0.07 -0.87 2.14 -11.51 -0.02 -0.89 16 6 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 7 C -0.12 -1.52 5.30 30.67 0.16 -1.35 16 8 C 0.11 1.38 6.43 86.36 0.56 1.93 16 9 N -1.00 -17.52 3.23 -513.86 -1.66 -19.18 16 10 S 2.61 69.42 5.45 -56.49 -0.31 69.11 16 11 O -0.99 -33.38 16.58 -127.65 -2.12 -35.49 16 12 O -0.99 -32.36 16.59 -127.65 -2.12 -34.48 16 13 C -0.60 -14.92 6.18 71.99 0.44 -14.48 16 14 C -0.11 -3.96 5.16 30.60 0.16 -3.80 16 15 C 0.00 -0.19 4.04 29.85 0.12 -0.06 16 16 C -0.55 -31.48 9.66 25.60 0.25 -31.23 16 17 H 0.03 1.77 7.99 -2.91 -0.02 1.75 16 18 C 0.00 -0.12 5.47 84.65 0.46 0.35 16 19 N -0.95 -60.10 13.96 21.45 0.30 -59.80 16 20 Si 0.96 42.63 27.47 68.60 1.88 44.52 16 21 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 22 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.24 -9.26 6.54 99.48 0.65 -8.61 16 24 C 0.12 1.74 5.69 86.22 0.49 2.23 16 25 C -0.09 -1.42 2.04 -10.86 -0.02 -1.44 16 26 H 0.05 1.21 8.13 -2.38 -0.02 1.19 16 27 C -0.16 -2.32 8.86 71.98 0.64 -1.68 16 28 H 0.06 0.61 8.13 -2.39 -0.02 0.59 16 29 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.62 8.13 -2.39 -0.02 0.60 16 31 H 0.11 0.92 8.08 -2.39 -0.02 0.90 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.10 1.38 6.86 -2.39 -0.02 1.36 16 35 H 0.16 2.98 8.14 -2.39 -0.02 2.96 16 36 H 0.16 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.03 1.44 7.20 -2.39 -0.02 1.42 16 40 H 0.03 1.32 7.57 -2.39 -0.02 1.30 16 41 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 42 H 0.09 1.59 6.85 -2.39 -0.02 1.57 16 43 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 1.24 5.41 -2.39 -0.01 1.23 16 45 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -83.52 378.52 1.56 -81.96 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.90 Total: 11.42 kcal Atomic # 6 Polarization: -45.61 SS G_CDS: 4.93 Total: -40.68 kcal Atomic # 7 Polarization: -77.62 SS G_CDS: -1.36 Total: -78.98 kcal Atomic # 8 Polarization: -82.87 SS G_CDS: -4.48 Total: -87.35 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.88 Total: 44.52 kcal Atomic # 16 Polarization: 69.42 SS G_CDS: -0.31 Total: 69.11 kcal Total: -83.52 1.56 -81.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248967144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.956 kcal (2) G-P(sol) polarization free energy of solvation -83.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds