Wall clock time and date at job start Tue Mar 31 2020 17:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 116.99723 * 2 1 4 4 O 1.20828 * 119.99910 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99884 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.46880 * 180.02562 * 5 3 2 7 7 C 1.36744 * 119.99734 * 263.87949 * 6 5 3 8 8 H 1.07999 * 119.99849 * 204.14574 * 7 6 5 9 9 C 1.39068 * 119.99860 * 24.15013 * 7 6 5 10 10 N 1.31361 * 120.00279 * 4.91198 * 9 7 6 11 11 Si 1.86806 * 119.99901 * 184.91740 * 9 7 6 12 12 H 1.48500 * 109.46975 * 59.99838 * 11 9 7 13 13 H 1.48503 * 109.47116 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46969 * 299.99794 * 11 9 7 15 15 C 1.34778 * 120.00122 * 83.88580 * 6 5 3 16 16 O 1.21845 * 120.00006 * 354.95865 * 15 6 5 17 17 C 1.41335 * 119.99786 * 174.96264 * 15 6 5 18 18 C 1.35794 * 119.99698 * 173.04119 * 17 15 6 19 19 C 1.41515 * 119.99955 * 349.06543 * 18 17 15 20 20 C 1.38037 * 126.10823 * 133.05547 * 19 18 17 21 21 C 1.40291 * 106.52324 * 179.97438 * 20 19 18 22 22 C 1.35173 * 107.21636 * 359.97438 * 21 20 19 23 23 C 1.50700 * 125.48020 * 180.02562 * 22 21 20 24 24 H 1.08996 * 115.55008 * 334.41942 * 23 22 21 25 25 C 1.52996 * 117.49768 * 188.74485 * 23 22 21 26 26 C 1.53005 * 117.49659 * 120.08465 * 23 22 21 27 27 H 1.09001 * 117.49239 * 214.98309 * 26 23 22 28 28 C 1.52992 * 117.49927 * 359.97438 * 26 23 22 29 29 O 1.34044 * 109.04197 * 359.97438 * 22 21 20 30 30 H 1.09004 * 109.47069 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47301 * 299.99375 * 1 2 3 32 32 H 1.08999 * 109.47271 * 59.99589 * 1 2 3 33 33 H 1.08990 * 109.47140 * 60.00515 * 5 3 2 34 34 H 1.09001 * 109.47042 * 300.00122 * 5 3 2 35 35 H 0.97000 * 119.99937 * 180.02562 * 10 9 7 36 36 H 1.07995 * 120.00594 * 353.04271 * 17 15 6 37 37 H 1.07998 * 119.99650 * 169.06883 * 18 17 15 38 38 H 1.08001 * 126.73588 * 359.97438 * 20 19 18 39 39 H 1.08001 * 126.39098 * 179.97438 * 21 20 19 40 40 H 1.08995 * 117.50325 * 0.02562 * 25 23 22 41 41 H 1.08999 * 117.49705 * 145.02296 * 25 23 22 42 42 H 1.09003 * 109.47276 * 59.99962 * 28 26 23 43 43 H 1.09007 * 109.46972 * 180.02562 * 28 26 23 44 44 H 1.09001 * 109.47485 * 299.99979 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6798 0.0002 7 6 4.2960 3.3004 -1.1771 8 1 4.9510 4.1591 -1.1767 9 6 3.7721 2.8259 -2.3748 10 7 2.9003 1.8434 -2.3669 11 14 4.3084 3.5858 -3.9949 12 1 5.7757 3.4239 -4.1559 13 1 3.6099 2.9063 -5.1155 14 1 3.9661 5.0308 -4.0011 15 6 4.0539 3.3606 1.1611 16 8 3.6867 2.8370 2.1982 17 6 4.5556 4.6818 1.1755 18 6 4.4981 5.4175 2.3154 19 6 3.7362 4.9585 3.4161 20 6 4.1504 4.9193 4.7323 21 6 3.0793 4.3964 5.4722 22 6 2.0771 4.1432 4.6012 23 6 0.7295 3.5723 4.9602 24 1 0.7019 2.9660 5.8656 25 6 -0.1953 3.1676 3.8105 26 6 -0.5044 4.4177 4.6382 27 1 -1.3439 4.3672 5.3316 28 6 -0.2757 5.7782 3.9769 29 8 2.4744 4.4828 3.3668 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 3.9557 0.7811 -0.8908 34 1 3.9564 0.7806 0.8891 35 1 2.5353 1.5122 -3.2023 36 1 4.9847 5.1063 0.2800 37 1 5.0337 6.3530 2.3819 38 1 5.1105 5.2302 5.1169 39 1 3.0592 4.2276 6.5388 40 1 0.1711 3.3139 2.7945 41 1 -0.8316 2.2953 3.9597 42 1 0.2340 5.6378 3.0237 43 1 -1.2357 6.2659 3.8077 44 1 0.3377 6.4005 4.6286 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255113673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:30 Heat of formation + Delta-G solvation = -37.336351 kcal Electronic energy + Delta-G solvation = -30243.249402 eV Core-core repulsion = 26130.195370 eV Total energy + Delta-G solvation = -4113.054032 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.81731 -39.47750 -38.42644 -37.42412 -35.52441 -34.63065 -33.15888 -32.20754 -31.62508 -29.22267 -28.50959 -27.59909 -26.28032 -25.01413 -23.47704 -21.60751 -21.17875 -20.53460 -19.87479 -19.31803 -18.92193 -17.22310 -16.73268 -16.47714 -15.82438 -15.48249 -15.41849 -15.12019 -14.93829 -14.45768 -14.38536 -13.56428 -13.50907 -13.17349 -12.95021 -12.68374 -12.46871 -12.38659 -12.34016 -12.26981 -12.09935 -11.74596 -11.51586 -11.40755 -11.32016 -11.23013 -11.21569 -10.79357 -10.60939 -10.46368 -10.24880 -9.80986 -9.77716 -9.59396 -9.26012 -9.02280 -8.95006 -8.65477 -7.94286 -7.12401 -6.55001 -4.09058 1.38220 2.58865 3.07606 3.12454 3.14235 3.25293 3.62953 3.71718 3.78080 4.03333 4.14800 4.44013 4.75562 4.81068 4.91941 5.04329 5.12806 5.40168 5.46094 5.61240 5.66401 5.71910 5.79487 5.81157 5.91415 5.96529 5.97299 6.02079 6.11756 6.12092 6.25175 6.35491 6.37731 6.42616 6.47928 6.53880 6.66566 6.73088 6.79530 7.02151 7.21506 7.24043 7.50162 7.61868 7.92492 8.17815 8.90709 9.17863 9.32053 9.75786 10.50498 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011907 B = 0.004964 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.938309 B = 5639.406972 C = 6912.489639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.376 6.376 3 C 0.491 3.509 4 O -0.501 6.501 5 C 0.159 3.841 6 N -0.416 5.416 7 C -0.329 4.329 8 H 0.104 0.896 9 C 0.038 3.962 10 N -0.875 5.875 11 Si 0.934 3.066 12 H -0.271 1.271 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.482 3.518 16 O -0.581 6.581 17 C -0.129 4.129 18 C -0.074 4.074 19 C 0.060 3.940 20 C -0.214 4.214 21 C -0.213 4.213 22 C 0.026 3.974 23 C -0.077 4.077 24 H 0.126 0.874 25 C -0.162 4.162 26 C -0.145 4.145 27 H 0.106 0.894 28 C -0.123 4.123 29 O -0.127 6.127 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.127 0.873 34 H 0.076 0.924 35 H 0.275 0.725 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.031 2.287 7.785 8.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.294 6.294 3 C 0.332 3.668 4 O -0.385 6.385 5 C 0.033 3.967 6 N -0.134 5.134 7 C -0.456 4.456 8 H 0.122 0.878 9 C -0.166 4.166 10 N -0.513 5.513 11 Si 0.760 3.240 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.197 1.197 15 C 0.275 3.725 16 O -0.468 6.468 17 C -0.149 4.149 18 C -0.095 4.095 19 C 0.009 3.991 20 C -0.234 4.234 21 C -0.232 4.232 22 C -0.026 4.026 23 C -0.095 4.095 24 H 0.143 0.857 25 C -0.199 4.199 26 C -0.163 4.163 27 H 0.125 0.875 28 C -0.180 4.180 29 O -0.020 6.020 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.145 0.855 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.153 0.847 37 H 0.160 0.840 38 H 0.157 0.843 39 H 0.154 0.846 40 H 0.125 0.875 41 H 0.113 0.887 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.740 2.157 7.813 8.556 hybrid contribution 0.085 0.251 -1.011 1.045 sum -2.654 2.408 6.803 7.689 Atomic orbital electron populations 1.22899 0.78908 1.01655 1.01505 1.86456 1.21500 1.35658 1.85803 1.23797 0.92128 0.80477 0.70414 1.90511 1.66429 1.36317 1.45255 1.20489 0.87439 0.85462 1.03327 1.43297 1.55741 1.08184 1.06149 1.19646 1.28012 1.14755 0.83210 0.87849 1.25351 0.94686 0.96438 1.00174 1.69617 1.27144 1.26043 1.28526 0.85880 0.78665 0.79249 0.80216 1.19650 1.20757 1.19694 1.16912 0.84031 0.87224 0.84344 1.90750 1.53437 1.70369 1.32246 1.22570 0.99558 0.95116 0.97677 1.20349 0.98493 0.99627 0.91060 1.19454 0.84682 1.00493 0.94462 1.21843 1.00212 1.09218 0.92116 1.21066 0.93986 1.08600 0.99555 1.21126 0.95694 1.03241 0.82524 1.20501 0.85058 1.03336 1.00636 0.85661 1.23183 1.01427 0.97862 0.97392 1.22468 0.97759 0.93199 1.02861 0.87547 1.21349 1.01240 0.94516 1.00877 1.84177 1.27630 1.60700 1.29518 0.89740 0.93210 0.92799 0.85492 0.90654 0.91401 0.84686 0.84012 0.84304 0.84645 0.87453 0.88678 0.91784 0.92422 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.80 10.56 101.05 1.07 1.87 16 2 O -0.38 -8.30 10.57 -39.25 -0.41 -8.72 16 3 C 0.49 12.31 6.00 36.01 0.22 12.52 16 4 O -0.50 -13.98 15.73 -18.75 -0.29 -14.27 16 5 C 0.16 3.85 5.09 -5.19 -0.03 3.82 16 6 N -0.42 -10.42 2.17 -119.44 -0.26 -10.68 16 7 C -0.33 -8.05 9.08 -15.05 -0.14 -8.18 16 8 H 0.10 2.31 5.92 -52.49 -0.31 2.00 16 9 C 0.04 0.93 5.21 -17.45 -0.09 0.84 16 10 N -0.87 -22.30 8.68 55.50 0.48 -21.82 16 11 Si 0.93 18.94 29.56 -169.99 -5.02 13.92 16 12 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 13 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 14 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 15 C 0.48 11.84 6.97 -15.08 -0.11 11.74 16 16 O -0.58 -15.34 12.67 -18.57 -0.24 -15.57 16 17 C -0.13 -2.65 9.19 -39.28 -0.36 -3.01 16 18 C -0.07 -1.35 9.94 -39.21 -0.39 -1.74 16 19 C 0.06 1.21 4.94 -38.41 -0.19 1.02 16 20 C -0.21 -3.83 10.90 -38.88 -0.42 -4.25 16 21 C -0.21 -3.71 10.76 -39.90 -0.43 -4.14 16 22 C 0.03 0.50 5.89 -35.40 -0.21 0.29 16 23 C -0.08 -1.22 6.23 -91.77 -0.57 -1.79 16 24 H 0.13 1.66 8.14 -51.93 -0.42 1.23 16 25 C -0.16 -2.64 9.81 -26.69 -0.26 -2.90 16 26 C -0.14 -2.02 6.41 -90.58 -0.58 -2.60 16 27 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 28 C -0.12 -1.77 9.15 37.15 0.34 -1.43 16 29 O -0.13 -2.77 7.53 -19.02 -0.14 -2.91 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 32 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 33 H 0.13 3.06 6.39 -51.93 -0.33 2.73 16 34 H 0.08 1.74 7.69 -51.93 -0.40 1.34 16 35 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 36 H 0.14 2.49 6.07 -52.49 -0.32 2.17 16 37 H 0.14 1.94 8.06 -52.49 -0.42 1.51 16 38 H 0.14 2.08 8.06 -52.49 -0.42 1.65 16 39 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 40 H 0.11 2.21 7.86 -51.93 -0.41 1.80 16 41 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.06 1.11 7.25 -51.93 -0.38 0.73 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 373.13 15.07 5.62 5.62 Total: -1.00 -32.24 373.13 -8.35 -40.59 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -5.93 Total: 11.79 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -2.15 Total: 2.05 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.22 Total: -32.50 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -1.09 Total: -41.47 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.24 -8.35 -40.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255113673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.252 kcal (2) G-P(sol) polarization free energy of solvation -32.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds