Wall clock time and date at job start Tue Mar 31 2020 17:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 116.99723 * 2 1 4 4 O 1.20828 * 119.99910 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99884 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.46880 * 180.02562 * 5 3 2 7 7 C 1.36744 * 119.99734 * 263.87949 * 6 5 3 8 8 H 1.07999 * 119.99849 * 204.14574 * 7 6 5 9 9 C 1.39068 * 119.99860 * 24.15013 * 7 6 5 10 10 N 1.31361 * 120.00279 * 4.91198 * 9 7 6 11 11 Si 1.86806 * 119.99901 * 184.91740 * 9 7 6 12 12 H 1.48500 * 109.46975 * 59.99838 * 11 9 7 13 13 H 1.48503 * 109.47116 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46969 * 299.99794 * 11 9 7 15 15 C 1.34778 * 120.00122 * 83.88580 * 6 5 3 16 16 O 1.21845 * 120.00006 * 354.95865 * 15 6 5 17 17 C 1.41335 * 119.99786 * 174.96264 * 15 6 5 18 18 C 1.35794 * 119.99698 * 173.04119 * 17 15 6 19 19 C 1.41515 * 119.99955 * 349.06543 * 18 17 15 20 20 C 1.38037 * 126.10823 * 133.05547 * 19 18 17 21 21 C 1.40291 * 106.52324 * 179.97438 * 20 19 18 22 22 C 1.35173 * 107.21636 * 359.97438 * 21 20 19 23 23 C 1.50700 * 125.48020 * 180.02562 * 22 21 20 24 24 H 1.08996 * 115.55008 * 334.41942 * 23 22 21 25 25 C 1.52996 * 117.49768 * 188.74485 * 23 22 21 26 26 C 1.53005 * 117.49659 * 120.08465 * 23 22 21 27 27 H 1.09001 * 117.49239 * 214.98309 * 26 23 22 28 28 C 1.52992 * 117.49927 * 359.97438 * 26 23 22 29 29 O 1.34044 * 109.04197 * 359.97438 * 22 21 20 30 30 H 1.09004 * 109.47069 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47301 * 299.99375 * 1 2 3 32 32 H 1.08999 * 109.47271 * 59.99589 * 1 2 3 33 33 H 1.08990 * 109.47140 * 60.00515 * 5 3 2 34 34 H 1.09001 * 109.47042 * 300.00122 * 5 3 2 35 35 H 0.97000 * 119.99937 * 180.02562 * 10 9 7 36 36 H 1.07995 * 120.00594 * 353.04271 * 17 15 6 37 37 H 1.07998 * 119.99650 * 169.06883 * 18 17 15 38 38 H 1.08001 * 126.73588 * 359.97438 * 20 19 18 39 39 H 1.08001 * 126.39098 * 179.97438 * 21 20 19 40 40 H 1.08995 * 117.50325 * 0.02562 * 25 23 22 41 41 H 1.08999 * 117.49705 * 145.02296 * 25 23 22 42 42 H 1.09003 * 109.47276 * 59.99962 * 28 26 23 43 43 H 1.09007 * 109.46972 * 180.02562 * 28 26 23 44 44 H 1.09001 * 109.47485 * 299.99979 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6798 0.0002 7 6 4.2960 3.3004 -1.1771 8 1 4.9510 4.1591 -1.1767 9 6 3.7721 2.8259 -2.3748 10 7 2.9003 1.8434 -2.3669 11 14 4.3084 3.5858 -3.9949 12 1 5.7757 3.4239 -4.1559 13 1 3.6099 2.9063 -5.1155 14 1 3.9661 5.0308 -4.0011 15 6 4.0539 3.3606 1.1611 16 8 3.6867 2.8370 2.1982 17 6 4.5556 4.6818 1.1755 18 6 4.4981 5.4175 2.3154 19 6 3.7362 4.9585 3.4161 20 6 4.1504 4.9193 4.7323 21 6 3.0793 4.3964 5.4722 22 6 2.0771 4.1432 4.6012 23 6 0.7295 3.5723 4.9602 24 1 0.7019 2.9660 5.8656 25 6 -0.1953 3.1676 3.8105 26 6 -0.5044 4.4177 4.6382 27 1 -1.3439 4.3672 5.3316 28 6 -0.2757 5.7782 3.9769 29 8 2.4744 4.4828 3.3668 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 3.9557 0.7811 -0.8908 34 1 3.9564 0.7806 0.8891 35 1 2.5353 1.5122 -3.2023 36 1 4.9847 5.1063 0.2800 37 1 5.0337 6.3530 2.3819 38 1 5.1105 5.2302 5.1169 39 1 3.0592 4.2276 6.5388 40 1 0.1711 3.3139 2.7945 41 1 -0.8316 2.2953 3.9597 42 1 0.2340 5.6378 3.0237 43 1 -1.2357 6.2659 3.8077 44 1 0.3377 6.4005 4.6286 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255113673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:29 Heat of formation + Delta-G solvation = -53.603930 kcal Electronic energy + Delta-G solvation = -30243.954818 eV Core-core repulsion = 26130.195370 eV Total energy + Delta-G solvation = -4113.759448 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.26118 -41.35578 -40.24360 -38.66716 -37.35953 -36.54507 -34.73919 -33.64501 -33.49138 -30.85474 -29.92653 -29.01610 -27.90348 -26.80049 -25.00741 -23.09492 -22.59623 -21.98570 -21.56750 -20.84861 -20.49550 -18.83913 -18.56685 -18.36062 -17.29790 -17.12056 -17.08410 -16.77582 -16.44688 -16.07800 -15.99679 -15.28597 -15.15180 -14.71221 -14.22477 -14.16277 -14.05533 -14.02492 -13.94395 -13.60552 -13.45788 -13.31479 -13.15275 -13.05355 -12.85226 -12.72747 -12.55385 -12.43532 -12.33200 -12.12611 -11.58121 -11.53132 -11.46126 -11.02575 -10.94763 -10.76012 -10.50838 -10.37307 -9.82796 -8.58140 -8.37673 -5.99123 -0.13918 1.14879 1.46232 1.49280 1.56731 1.77128 1.83204 2.03152 2.29034 2.33083 2.67996 2.90816 3.00273 3.22317 3.55420 3.74782 3.87511 4.06919 4.21891 4.26844 4.31070 4.31961 4.36552 4.37877 4.40273 4.51454 4.66004 4.67804 4.71053 4.78160 4.79517 4.81114 4.93922 5.00382 5.03185 5.08117 5.22248 5.27188 5.37331 5.41845 5.57917 5.65405 5.76493 5.86503 6.31849 6.50818 7.05047 7.25770 7.48388 7.91308 8.67997 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011907 B = 0.004964 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.938309 B = 5639.406972 C = 6912.489639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.379 6.379 3 C 0.493 3.507 4 O -0.538 6.538 5 C 0.159 3.841 6 N -0.433 5.433 7 C -0.346 4.346 8 H 0.120 0.880 9 C -0.008 4.008 10 N -0.905 5.905 11 Si 1.003 2.997 12 H -0.256 1.256 13 H -0.288 1.288 14 H -0.271 1.271 15 C 0.476 3.524 16 O -0.609 6.609 17 C -0.174 4.174 18 C -0.035 4.035 19 C 0.010 3.990 20 C -0.200 4.200 21 C -0.217 4.217 22 C 0.008 3.992 23 C -0.087 4.087 24 H 0.157 0.843 25 C -0.181 4.181 26 C -0.118 4.118 27 H 0.149 0.851 28 C -0.122 4.122 29 O -0.161 6.161 30 H 0.134 0.866 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.124 0.876 34 H 0.077 0.923 35 H 0.271 0.729 36 H 0.153 0.847 37 H 0.192 0.808 38 H 0.170 0.830 39 H 0.169 0.831 40 H 0.051 0.949 41 H 0.117 0.883 42 H 0.023 0.977 43 H 0.081 0.919 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.963 3.380 9.578 10.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.296 6.296 3 C 0.336 3.664 4 O -0.426 6.426 5 C 0.033 3.967 6 N -0.151 5.151 7 C -0.473 4.473 8 H 0.137 0.863 9 C -0.209 4.209 10 N -0.544 5.544 11 Si 0.826 3.174 12 H -0.180 1.180 13 H -0.214 1.214 14 H -0.196 1.196 15 C 0.270 3.730 16 O -0.498 6.498 17 C -0.194 4.194 18 C -0.056 4.056 19 C -0.040 4.040 20 C -0.219 4.219 21 C -0.236 4.236 22 C -0.044 4.044 23 C -0.105 4.105 24 H 0.174 0.826 25 C -0.218 4.218 26 C -0.135 4.135 27 H 0.166 0.834 28 C -0.179 4.179 29 O -0.056 6.056 30 H 0.152 0.848 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.142 0.858 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.170 0.830 37 H 0.209 0.791 38 H 0.188 0.812 39 H 0.186 0.814 40 H 0.070 0.930 41 H 0.135 0.865 42 H 0.042 0.958 43 H 0.100 0.900 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.648 3.243 9.614 10.486 hybrid contribution -0.024 -0.095 -1.348 1.352 sum -2.671 3.148 8.266 9.239 Atomic orbital electron populations 1.23244 0.76408 1.04712 1.00934 1.86421 1.23954 1.34068 1.85200 1.23946 0.92482 0.80639 0.69351 1.90482 1.67274 1.37652 1.47159 1.20471 0.87245 0.85958 1.03020 1.43480 1.56543 1.08389 1.06684 1.20092 1.28558 1.15410 0.83283 0.86260 1.26262 0.94538 0.96790 1.03280 1.69738 1.28435 1.27488 1.28788 0.84835 0.78856 0.78017 0.75700 1.18004 1.21356 1.19574 1.17580 0.83108 0.88574 0.83735 1.90703 1.54546 1.71464 1.33100 1.22535 1.02957 0.94131 0.99785 1.21030 0.95491 0.99924 0.89123 1.20063 0.85132 1.02723 0.96132 1.22311 1.01290 1.07215 0.91114 1.21516 0.93166 1.07863 1.01006 1.21918 0.97439 1.02964 0.82098 1.20865 0.84328 1.04284 1.01001 0.82574 1.23026 1.03101 1.00629 0.95010 1.22640 0.97792 0.91418 1.01687 0.83354 1.21346 1.02148 0.95437 0.98993 1.84173 1.28678 1.61427 1.31303 0.84788 0.93394 0.93829 0.85803 0.90552 0.91863 0.82993 0.79080 0.81209 0.81384 0.92975 0.86487 0.95825 0.89977 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.46 10.56 113.37 1.20 2.66 16 2 O -0.38 -17.26 10.57 -51.39 -0.54 -17.81 16 3 C 0.49 26.00 6.00 71.24 0.43 26.43 16 4 O -0.54 -31.85 15.73 21.96 0.35 -31.51 16 5 C 0.16 8.13 5.09 85.63 0.44 8.57 16 6 N -0.43 -22.65 2.17 -649.95 -1.41 -24.06 16 7 C -0.35 -17.42 9.08 84.13 0.76 -16.66 16 8 H 0.12 5.40 5.92 -2.91 -0.02 5.38 16 9 C -0.01 -0.40 5.21 84.96 0.44 0.04 16 10 N -0.91 -47.85 8.68 21.68 0.19 -47.67 16 11 Si 1.00 39.29 29.56 68.60 2.03 41.32 16 12 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 13 H -0.29 -11.42 7.11 99.48 0.71 -10.71 16 14 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 15 C 0.48 24.30 6.97 85.00 0.59 24.89 16 16 O -0.61 -33.58 12.67 17.78 0.23 -33.36 16 17 C -0.17 -7.25 9.19 22.46 0.21 -7.04 16 18 C -0.04 -1.25 9.94 22.51 0.22 -1.02 16 19 C 0.01 0.38 4.94 23.03 0.11 0.49 16 20 C -0.20 -6.73 10.90 22.72 0.25 -6.48 16 21 C -0.22 -7.10 10.76 22.06 0.24 -6.86 16 22 C 0.01 0.29 5.89 24.98 0.15 0.43 16 23 C -0.09 -2.65 6.23 -11.54 -0.07 -2.72 16 24 H 0.16 3.68 8.14 -2.39 -0.02 3.66 16 25 C -0.18 -6.00 9.81 30.62 0.30 -5.70 16 26 C -0.12 -3.07 6.41 -10.77 -0.07 -3.14 16 27 H 0.15 2.69 8.14 -2.39 -0.02 2.67 16 28 C -0.12 -3.46 9.15 71.98 0.66 -2.80 16 29 O -0.16 -7.22 7.53 16.16 0.12 -7.10 16 30 H 0.13 3.43 8.14 -2.39 -0.02 3.41 16 31 H 0.05 1.72 8.13 -2.39 -0.02 1.71 16 32 H 0.04 1.65 8.13 -2.39 -0.02 1.63 16 33 H 0.12 6.30 6.39 -2.39 -0.02 6.29 16 34 H 0.08 3.76 7.69 -2.39 -0.02 3.74 16 35 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 36 H 0.15 5.61 6.07 -2.91 -0.02 5.59 16 37 H 0.19 4.60 8.06 -2.91 -0.02 4.57 16 38 H 0.17 4.47 8.06 -2.91 -0.02 4.45 16 39 H 0.17 4.25 8.06 -2.91 -0.02 4.22 16 40 H 0.05 2.33 7.86 -2.39 -0.02 2.31 16 41 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16 42 H 0.02 0.84 7.25 -2.39 -0.02 0.82 16 43 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 44 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -75.70 373.13 7.83 -67.87 By element: Atomic # 1 Polarization: 40.21 SS G_CDS: 1.02 Total: 41.23 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 5.85 Total: 11.09 kcal Atomic # 7 Polarization: -70.51 SS G_CDS: -1.22 Total: -71.73 kcal Atomic # 8 Polarization: -89.92 SS G_CDS: 0.15 Total: -89.77 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -75.70 7.83 -67.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255113673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.261 kcal (2) G-P(sol) polarization free energy of solvation -75.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds