Wall clock time and date at job start Tue Mar 31 2020 18:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35993 * 116.99766 * 2 1 4 4 C 1.38128 * 119.90006 * 0.28484 * 3 2 1 5 5 C 1.39920 * 119.87781 * 180.24086 * 4 3 2 6 6 C 1.47001 * 120.10824 * 179.81940 * 5 4 3 7 7 C 1.34995 * 119.99812 * 316.04095 * 6 5 4 8 8 C 1.46246 * 119.99865 * 349.03161 * 7 6 5 9 9 O 1.21717 * 120.00596 * 353.21402 * 8 7 6 10 10 N 1.34782 * 119.99966 * 173.21601 * 8 7 6 11 11 C 1.46490 * 120.00307 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.47319 * 35.00191 * 11 10 8 13 13 C 1.52994 * 109.47320 * 274.99832 * 11 10 8 14 14 C 1.50700 * 109.47308 * 154.99777 * 11 10 8 15 15 H 1.08004 * 119.99731 * 0.02562 * 14 11 10 16 16 C 1.37880 * 120.00289 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99615 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00121 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.46957 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47327 * 119.99947 * 18 16 14 21 21 H 1.48503 * 109.47017 * 239.99985 * 18 16 14 22 22 C 1.39895 * 119.78559 * 359.54126 * 5 4 3 23 23 C 1.38334 * 120.03793 * 0.22544 * 22 5 4 24 24 C 1.39157 * 120.01983 * 359.94327 * 23 22 5 25 25 O 1.36091 * 120.71895 * 180.20905 * 24 23 22 26 26 C 1.43157 * 116.73018 * 342.66551 * 25 24 23 27 27 C 1.53473 * 108.22983 * 46.34874 * 26 25 24 28 28 O 1.36154 * 119.22474 * 179.80268 * 23 22 5 29 29 H 1.08998 * 109.46839 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46395 * 299.99576 * 1 2 3 31 31 H 1.08992 * 109.47223 * 59.99563 * 1 2 3 32 32 H 1.07998 * 120.06183 * 359.97438 * 4 3 2 33 33 H 1.07998 * 120.00117 * 136.04779 * 6 5 4 34 34 H 1.08003 * 119.99504 * 169.03249 * 7 6 5 35 35 H 0.97004 * 119.99575 * 359.97438 * 10 8 7 36 36 H 1.09004 * 109.47467 * 179.97438 * 13 11 10 37 37 H 1.08999 * 109.46956 * 60.00005 * 13 11 10 38 38 H 1.08999 * 109.47203 * 299.99938 * 13 11 10 39 39 H 0.97004 * 119.99278 * 179.97438 * 17 16 14 40 40 H 1.08000 * 119.98347 * 180.24290 * 22 5 4 41 41 H 1.09003 * 109.71155 * 286.66293 * 26 25 24 42 42 H 1.08996 * 109.70807 * 166.03394 * 26 25 24 43 43 H 1.09000 * 109.70619 * 180.51021 * 27 26 25 44 44 H 1.08990 * 109.70891 * 59.87498 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2921 2.3688 0.0060 5 6 1.9277 3.6153 0.0009 6 6 1.1298 4.8499 0.0031 7 6 0.0525 4.9588 -0.8030 8 6 -0.1850 3.9604 -1.8449 9 8 0.6494 3.1027 -2.0676 10 7 -1.3279 3.9900 -2.5587 11 6 -1.5656 2.9903 -3.6027 12 1 -1.1359 2.0364 -3.2970 13 6 -0.9114 3.4497 -4.9072 14 6 -3.0488 2.8281 -3.8146 15 1 -3.7448 3.4118 -3.2302 16 6 -3.5174 1.9347 -4.7544 17 7 -2.6699 1.2244 -5.4663 18 14 -5.3559 1.7342 -5.0175 19 1 -6.0893 2.6415 -4.0986 20 1 -5.6947 2.0729 -6.4230 21 1 -5.7453 0.3284 -4.7394 22 6 3.3250 3.6828 -0.0005 23 6 4.0745 2.5201 -0.0016 24 6 3.4389 1.2821 -0.0001 25 8 4.1622 0.1294 0.0032 26 6 5.5389 0.2319 -0.3760 27 6 6.1538 1.4258 0.3667 28 8 5.4334 2.6051 -0.0070 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 0.2136 2.3115 0.0102 33 1 1.4056 5.6699 0.6497 34 1 -0.6339 5.7833 -0.6785 35 1 -1.9930 4.6734 -2.3811 36 1 -1.0879 2.7056 -5.6840 37 1 0.1613 3.5670 -4.7540 38 1 -1.3412 4.4036 -5.2130 39 1 -2.9996 0.5955 -6.1272 40 1 3.8190 4.6433 -0.0005 41 1 5.6130 0.3904 -1.4519 42 1 6.0648 -0.6824 -0.1015 43 1 7.2022 1.5317 0.0879 44 1 6.0726 1.2709 1.4425 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255133952.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:16 Heat of formation + Delta-G solvation = -88.309608 kcal Electronic energy + Delta-G solvation = -29287.419096 eV Core-core repulsion = 25172.154698 eV Total energy + Delta-G solvation = -4115.264399 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.15862 -39.44044 -38.68801 -37.17396 -36.55165 -34.80982 -33.07734 -32.38554 -30.65794 -29.74990 -28.97088 -27.97796 -26.84056 -25.27705 -24.91334 -23.22312 -21.99703 -21.07245 -19.99975 -19.25316 -18.57476 -17.56722 -17.48356 -16.54748 -16.38957 -15.82034 -15.61918 -15.26548 -15.17095 -14.82558 -14.71941 -14.40646 -14.19312 -13.95636 -13.70179 -13.66758 -13.04401 -12.93384 -12.72344 -12.41062 -11.98861 -11.81209 -11.70988 -11.42456 -11.13542 -11.09237 -11.03601 -10.91227 -10.77946 -10.67662 -10.43182 -10.29154 -10.25485 -9.23590 -9.05426 -8.98839 -8.57036 -8.01898 -7.59500 -7.46270 -6.14310 -4.23895 0.92843 1.65829 2.04168 3.09681 3.21479 3.27029 3.29638 3.31933 3.54983 3.96600 3.99668 4.16551 4.26304 4.40831 4.74889 4.81873 4.87895 4.96942 5.14010 5.17854 5.27236 5.37572 5.39822 5.44723 5.51715 5.55726 5.62450 5.73839 5.94057 6.06362 6.21606 6.30660 6.40625 6.69663 6.75799 6.84138 6.97182 6.97923 7.15334 7.34522 7.45831 7.56855 7.69114 7.77676 7.90656 8.13911 8.67332 8.77587 9.14883 9.44340 10.91383 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016270 B = 0.003296 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.560948 B = 8493.196844 C = 9169.602307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.308 6.308 3 C 0.128 3.872 4 C -0.114 4.114 5 C -0.018 4.018 6 C -0.045 4.045 7 C -0.192 4.192 8 C 0.517 3.483 9 O -0.539 6.539 10 N -0.702 5.702 11 C 0.265 3.735 12 H 0.048 0.952 13 C -0.146 4.146 14 C -0.534 4.534 15 H 0.061 0.939 16 C 0.066 3.934 17 N -0.882 5.882 18 Si 0.900 3.100 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.132 4.132 23 C 0.068 3.932 24 C 0.024 3.976 25 O -0.297 6.297 26 C 0.019 3.981 27 C 0.021 3.979 28 O -0.307 6.307 29 H 0.098 0.902 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.388 0.612 36 H 0.089 0.911 37 H 0.015 0.985 38 H 0.025 0.975 39 H 0.264 0.736 40 H 0.132 0.868 41 H 0.075 0.925 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.186 3.351 13.676 18.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.221 6.221 3 C 0.083 3.917 4 C -0.133 4.133 5 C -0.019 4.019 6 C -0.065 4.065 7 C -0.213 4.213 8 C 0.304 3.696 9 O -0.419 6.419 10 N -0.349 5.349 11 C 0.164 3.836 12 H 0.066 0.934 13 C -0.205 4.205 14 C -0.573 4.573 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.519 5.519 18 Si 0.728 3.272 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.151 4.151 23 C 0.023 3.977 24 C -0.021 4.021 25 O -0.211 6.211 26 C -0.057 4.057 27 C -0.054 4.054 28 O -0.221 6.221 29 H 0.116 0.884 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.220 0.780 36 H 0.107 0.893 37 H 0.034 0.966 38 H 0.044 0.956 39 H 0.074 0.926 40 H 0.150 0.850 41 H 0.093 0.907 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.876 2.339 13.316 18.670 hybrid contribution -1.424 0.343 -0.397 1.517 sum 11.452 2.681 12.919 17.472 Atomic orbital electron populations 1.23099 0.78009 1.03835 1.01905 1.86089 1.21413 1.25750 1.88872 1.17856 0.88372 0.85365 1.00155 1.20963 0.99667 0.90189 1.02458 1.18245 0.91642 0.92636 0.99378 1.22145 0.92779 0.94942 0.96649 1.23324 0.99024 1.01331 0.97582 1.18400 0.83025 0.85214 0.82989 1.90880 1.44319 1.37737 1.68971 1.46556 1.18092 1.33109 1.37145 1.18712 0.95292 0.86922 0.82708 0.93443 1.22065 0.96178 1.00671 1.01595 1.21259 0.90820 1.23813 1.21365 0.92069 1.24891 0.98182 0.95264 0.95357 1.69921 1.33799 1.24763 1.23445 0.86417 0.84757 0.78008 0.78058 1.19742 1.20880 1.20878 1.20213 0.91845 0.96178 1.06829 1.18228 0.82498 0.92275 1.04687 1.18064 0.88813 0.85010 1.10256 1.86364 1.21824 1.28385 1.84566 1.23580 0.81727 1.00287 1.00094 1.23579 0.96921 0.85009 0.99928 1.86302 1.14873 1.36031 1.84930 0.88385 0.93203 0.91401 0.84943 0.84799 0.85254 0.77956 0.89250 0.96629 0.95559 0.92634 0.85026 0.90678 0.86436 0.86439 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.40 16 2 O -0.31 -5.69 10.24 -35.17 -0.36 -6.05 16 3 C 0.13 2.38 6.69 -39.18 -0.26 2.12 16 4 C -0.11 -2.00 5.58 -38.99 -0.22 -2.22 16 5 C -0.02 -0.29 4.53 -105.10 -0.48 -0.77 16 6 C -0.05 -0.59 9.80 -37.18 -0.36 -0.95 16 7 C -0.19 -2.71 9.91 -37.52 -0.37 -3.08 16 8 C 0.52 9.94 6.75 -13.04 -0.09 9.85 16 9 O -0.54 -12.20 11.82 5.17 0.06 -12.14 16 10 N -0.70 -14.18 5.06 -56.39 -0.29 -14.46 16 11 C 0.27 6.62 2.56 -69.09 -0.18 6.44 16 12 H 0.05 1.36 7.58 -51.93 -0.39 0.97 16 13 C -0.15 -3.67 9.26 37.15 0.34 -3.32 16 14 C -0.53 -13.88 8.73 -34.44 -0.30 -14.18 16 15 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 16 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 17 N -0.88 -24.65 11.32 55.43 0.63 -24.02 16 18 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 22 C -0.13 -2.02 9.70 -38.93 -0.38 -2.40 16 23 C 0.07 1.10 6.48 -39.20 -0.25 0.84 16 24 C 0.02 0.42 6.52 -38.80 -0.25 0.17 16 25 O -0.30 -4.82 10.16 -44.92 -0.46 -5.28 16 26 C 0.02 0.21 7.26 37.40 0.27 0.48 16 27 C 0.02 0.21 7.26 37.40 0.27 0.48 16 28 O -0.31 -4.30 10.41 -33.01 -0.34 -4.64 16 29 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.05 0.66 7.64 -51.93 -0.40 0.27 16 31 H 0.07 1.22 7.66 -51.93 -0.40 0.82 16 32 H 0.13 2.33 5.24 -52.49 -0.28 2.06 16 33 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 35 H 0.39 6.76 8.52 -40.82 -0.35 6.41 16 36 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 365.94 15.07 5.51 5.51 Total: -1.00 -33.38 365.94 -7.52 -40.89 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -5.90 Total: 8.28 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -1.36 Total: -3.46 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.34 Total: -38.49 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -1.10 Total: -28.11 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.38 -7.52 -40.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255133952.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.417 kcal (2) G-P(sol) polarization free energy of solvation -33.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds