Wall clock time and date at job start Tue Mar 31 2020 18:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35993 * 116.99766 * 2 1 4 4 C 1.38128 * 119.90006 * 0.28484 * 3 2 1 5 5 C 1.39920 * 119.87781 * 180.24086 * 4 3 2 6 6 C 1.47001 * 120.10824 * 179.81940 * 5 4 3 7 7 C 1.34995 * 119.99812 * 316.04095 * 6 5 4 8 8 C 1.46246 * 119.99865 * 349.03161 * 7 6 5 9 9 O 1.21717 * 120.00596 * 353.21402 * 8 7 6 10 10 N 1.34782 * 119.99966 * 173.21601 * 8 7 6 11 11 C 1.46490 * 120.00307 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.47319 * 35.00191 * 11 10 8 13 13 C 1.52994 * 109.47320 * 274.99832 * 11 10 8 14 14 C 1.50700 * 109.47308 * 154.99777 * 11 10 8 15 15 H 1.08004 * 119.99731 * 0.02562 * 14 11 10 16 16 C 1.37880 * 120.00289 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99615 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00121 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.46957 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47327 * 119.99947 * 18 16 14 21 21 H 1.48503 * 109.47017 * 239.99985 * 18 16 14 22 22 C 1.39895 * 119.78559 * 359.54126 * 5 4 3 23 23 C 1.38334 * 120.03793 * 0.22544 * 22 5 4 24 24 C 1.39157 * 120.01983 * 359.94327 * 23 22 5 25 25 O 1.36091 * 120.71895 * 180.20905 * 24 23 22 26 26 C 1.43157 * 116.73018 * 342.66551 * 25 24 23 27 27 C 1.53473 * 108.22983 * 46.34874 * 26 25 24 28 28 O 1.36154 * 119.22474 * 179.80268 * 23 22 5 29 29 H 1.08998 * 109.46839 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46395 * 299.99576 * 1 2 3 31 31 H 1.08992 * 109.47223 * 59.99563 * 1 2 3 32 32 H 1.07998 * 120.06183 * 359.97438 * 4 3 2 33 33 H 1.07998 * 120.00117 * 136.04779 * 6 5 4 34 34 H 1.08003 * 119.99504 * 169.03249 * 7 6 5 35 35 H 0.97004 * 119.99575 * 359.97438 * 10 8 7 36 36 H 1.09004 * 109.47467 * 179.97438 * 13 11 10 37 37 H 1.08999 * 109.46956 * 60.00005 * 13 11 10 38 38 H 1.08999 * 109.47203 * 299.99938 * 13 11 10 39 39 H 0.97004 * 119.99278 * 179.97438 * 17 16 14 40 40 H 1.08000 * 119.98347 * 180.24290 * 22 5 4 41 41 H 1.09003 * 109.71155 * 286.66293 * 26 25 24 42 42 H 1.08996 * 109.70807 * 166.03394 * 26 25 24 43 43 H 1.09000 * 109.70619 * 180.51021 * 27 26 25 44 44 H 1.08990 * 109.70891 * 59.87498 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2921 2.3688 0.0060 5 6 1.9277 3.6153 0.0009 6 6 1.1298 4.8499 0.0031 7 6 0.0525 4.9588 -0.8030 8 6 -0.1850 3.9604 -1.8449 9 8 0.6494 3.1027 -2.0676 10 7 -1.3279 3.9900 -2.5587 11 6 -1.5656 2.9903 -3.6027 12 1 -1.1359 2.0364 -3.2970 13 6 -0.9114 3.4497 -4.9072 14 6 -3.0488 2.8281 -3.8146 15 1 -3.7448 3.4118 -3.2302 16 6 -3.5174 1.9347 -4.7544 17 7 -2.6699 1.2244 -5.4663 18 14 -5.3559 1.7342 -5.0175 19 1 -6.0893 2.6415 -4.0986 20 1 -5.6947 2.0729 -6.4230 21 1 -5.7453 0.3284 -4.7394 22 6 3.3250 3.6828 -0.0005 23 6 4.0745 2.5201 -0.0016 24 6 3.4389 1.2821 -0.0001 25 8 4.1622 0.1294 0.0032 26 6 5.5389 0.2319 -0.3760 27 6 6.1538 1.4258 0.3667 28 8 5.4334 2.6051 -0.0070 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 0.2136 2.3115 0.0102 33 1 1.4056 5.6699 0.6497 34 1 -0.6339 5.7833 -0.6785 35 1 -1.9930 4.6734 -2.3811 36 1 -1.0879 2.7056 -5.6840 37 1 0.1613 3.5670 -4.7540 38 1 -1.3412 4.4036 -5.2130 39 1 -2.9996 0.5955 -6.1272 40 1 3.8190 4.6433 -0.0005 41 1 5.6130 0.3904 -1.4519 42 1 6.0648 -0.6824 -0.1015 43 1 7.2022 1.5317 0.0879 44 1 6.0726 1.2709 1.4425 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255133952.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:15 Heat of formation + Delta-G solvation = -111.211651 kcal Electronic energy + Delta-G solvation = -29288.412203 eV Core-core repulsion = 25172.154698 eV Total energy + Delta-G solvation = -4116.257506 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.29492 -40.81467 -40.07170 -38.36509 -37.78679 -36.59583 -34.29303 -34.25387 -31.77692 -31.10247 -30.57130 -29.20874 -28.12095 -27.34382 -26.03015 -24.56067 -23.29562 -22.45648 -21.54875 -20.65388 -19.84928 -18.88588 -18.61229 -18.11612 -17.63637 -17.33302 -17.05413 -16.86022 -16.36673 -16.06871 -15.92173 -15.80878 -15.36175 -15.29948 -15.17690 -14.93132 -14.42705 -14.25414 -14.15493 -13.89982 -13.63664 -13.15064 -12.98903 -12.95435 -12.87316 -12.73223 -12.58818 -12.31096 -12.23452 -12.14048 -12.05770 -11.81318 -11.50057 -11.07962 -10.66514 -10.52994 -10.29805 -9.68612 -8.96779 -8.69898 -8.17484 -6.35018 -0.26501 0.40342 0.84714 1.43231 1.44477 1.56325 2.03257 2.18794 2.36422 2.38199 2.55745 2.75410 2.80446 3.13235 3.38794 3.73677 3.81446 3.93777 4.06544 4.09945 4.17363 4.19937 4.27420 4.31011 4.40290 4.51830 4.59159 4.62616 4.71098 4.74809 4.90164 4.91600 5.05232 5.10779 5.14966 5.26902 5.43988 5.52871 5.60305 5.66689 5.73015 5.85405 5.95929 6.11131 6.16142 6.54035 6.74386 7.07596 7.33816 7.66757 8.88635 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016270 B = 0.003296 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.560948 B = 8493.196844 C = 9169.602307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.328 6.328 3 C 0.096 3.904 4 C -0.125 4.125 5 C -0.031 4.031 6 C -0.022 4.022 7 C -0.199 4.199 8 C 0.510 3.490 9 O -0.580 6.580 10 N -0.701 5.701 11 C 0.275 3.725 12 H -0.003 1.003 13 C -0.132 4.132 14 C -0.544 4.544 15 H 0.074 0.926 16 C 0.014 3.986 17 N -0.918 5.918 18 Si 0.970 3.030 19 H -0.258 1.258 20 H -0.280 1.280 21 H -0.284 1.284 22 C -0.133 4.133 23 C 0.065 3.935 24 C 0.005 3.995 25 O -0.322 6.322 26 C 0.009 3.991 27 C 0.019 3.981 28 O -0.314 6.314 29 H 0.120 0.880 30 H 0.070 0.930 31 H 0.031 0.969 32 H 0.122 0.878 33 H 0.188 0.812 34 H 0.174 0.826 35 H 0.404 0.596 36 H 0.063 0.937 37 H 0.007 0.993 38 H 0.039 0.961 39 H 0.264 0.736 40 H 0.161 0.839 41 H 0.067 0.933 42 H 0.154 0.846 43 H 0.159 0.841 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.452 5.654 15.334 20.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.243 6.243 3 C 0.051 3.949 4 C -0.144 4.144 5 C -0.032 4.032 6 C -0.042 4.042 7 C -0.220 4.220 8 C 0.299 3.701 9 O -0.463 6.463 10 N -0.350 5.350 11 C 0.172 3.828 12 H 0.015 0.985 13 C -0.191 4.191 14 C -0.582 4.582 15 H 0.092 0.908 16 C -0.186 4.186 17 N -0.557 5.557 18 Si 0.795 3.205 19 H -0.182 1.182 20 H -0.206 1.206 21 H -0.210 1.210 22 C -0.151 4.151 23 C 0.019 3.981 24 C -0.041 4.041 25 O -0.237 6.237 26 C -0.066 4.066 27 C -0.056 4.056 28 O -0.229 6.229 29 H 0.138 0.862 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.139 0.861 33 H 0.205 0.795 34 H 0.191 0.809 35 H 0.239 0.761 36 H 0.082 0.918 37 H 0.027 0.973 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.179 0.821 41 H 0.085 0.915 42 H 0.172 0.828 43 H 0.176 0.824 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.146 4.681 15.003 20.490 hybrid contribution -1.315 -0.459 -0.883 1.649 sum 11.831 4.222 14.120 18.899 Atomic orbital electron populations 1.23139 0.77120 1.05032 1.01074 1.86034 1.22458 1.26503 1.89257 1.18259 0.89357 0.85591 1.01732 1.20983 0.99160 0.91031 1.03245 1.18671 0.92505 0.93256 0.98761 1.22636 0.90852 0.94571 0.96101 1.23309 1.00752 1.01175 0.96740 1.19308 0.81785 0.85503 0.83464 1.90879 1.45534 1.39684 1.70177 1.46279 1.19348 1.32729 1.36630 1.18226 0.94723 0.86201 0.83690 0.98523 1.21886 0.95757 1.00357 1.01128 1.21588 0.91383 1.23873 1.21327 0.90797 1.25800 1.02806 0.94899 0.95104 1.70080 1.35983 1.25476 1.24122 0.85320 0.79150 0.77905 0.78103 1.18170 1.20629 1.21023 1.20591 0.91704 0.97173 1.05642 1.18433 0.83664 0.91993 1.03978 1.18307 0.88875 0.86136 1.10759 1.86310 1.24218 1.28415 1.84757 1.23979 0.79766 1.02894 0.99977 1.23954 0.98175 0.82998 1.00455 1.86281 1.13703 1.38029 1.84872 0.86157 0.91163 0.94975 0.86061 0.79469 0.80887 0.76081 0.91841 0.97350 0.94203 0.92700 0.82138 0.91479 0.82822 0.82357 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 9.81 113.37 1.11 2.15 16 2 O -0.33 -13.01 10.24 -78.70 -0.81 -13.82 16 3 C 0.10 3.77 6.69 22.53 0.15 3.92 16 4 C -0.13 -4.56 5.58 22.65 0.13 -4.43 16 5 C -0.03 -0.97 4.53 -20.17 -0.09 -1.06 16 6 C -0.02 -0.51 9.80 23.82 0.23 -0.27 16 7 C -0.20 -5.09 9.91 23.61 0.23 -4.85 16 8 C 0.51 19.64 6.75 86.32 0.58 20.23 16 9 O -0.58 -27.39 11.82 -4.40 -0.05 -27.45 16 10 N -0.70 -28.47 5.06 -450.52 -2.28 -30.75 16 11 C 0.28 14.24 2.56 44.25 0.11 14.35 16 12 H 0.00 -0.19 7.58 -2.38 -0.02 -0.21 16 13 C -0.13 -6.86 9.26 71.98 0.67 -6.20 16 14 C -0.54 -28.54 8.73 25.60 0.22 -28.32 16 15 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 16 C 0.01 0.74 5.30 84.66 0.45 1.19 16 17 N -0.92 -53.09 11.32 21.45 0.24 -52.85 16 18 Si 0.97 41.90 29.54 68.60 2.03 43.92 16 19 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 20 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 22 C -0.13 -3.87 9.70 22.69 0.22 -3.65 16 23 C 0.06 2.06 6.48 22.51 0.15 2.21 16 24 C 0.00 0.17 6.52 22.78 0.15 0.31 16 25 O -0.32 -10.74 10.16 -70.79 -0.72 -11.45 16 26 C 0.01 0.18 7.26 72.14 0.52 0.71 16 27 C 0.02 0.33 7.26 72.14 0.52 0.85 16 28 O -0.31 -8.30 10.41 -83.09 -0.87 -9.17 16 29 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 30 H 0.07 1.99 7.64 -2.39 -0.02 1.97 16 31 H 0.03 1.28 7.66 -2.39 -0.02 1.26 16 32 H 0.12 4.53 5.24 -2.91 -0.02 4.52 16 33 H 0.19 2.29 8.06 -2.91 -0.02 2.27 16 34 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 35 H 0.40 13.59 8.52 -92.71 -0.79 12.80 16 36 H 0.06 3.61 6.07 -2.39 -0.01 3.60 16 37 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 40 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 41 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.15 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.16 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -78.30 365.94 3.15 -75.14 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 0.25 Total: 29.28 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 5.36 Total: -2.86 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -2.04 Total: -83.60 kcal Atomic # 8 Polarization: -59.45 SS G_CDS: -2.44 Total: -61.89 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Total: -78.30 3.15 -75.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255133952.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.067 kcal (2) G-P(sol) polarization free energy of solvation -78.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds