Wall clock time and date at job start Tue Mar 31 2020 17:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.52147 * 2 1 4 4 C 1.53041 * 109.50041 * 239.91630 * 2 1 3 5 5 C 1.53042 * 109.53595 * 301.41235 * 4 2 1 6 6 H 1.08997 * 109.49367 * 58.58494 * 5 4 2 7 7 C 1.50704 * 109.52006 * 178.66633 * 5 4 2 8 8 O 1.20825 * 120.00251 * 359.84965 * 7 5 4 9 9 O 1.34230 * 119.99836 * 179.85707 * 7 5 4 10 10 C 1.53186 * 109.31078 * 298.63240 * 5 4 2 11 11 N 1.46925 * 108.77919 * 54.63971 * 10 5 4 12 12 S 1.65599 * 120.63446 * 126.36484 * 11 10 5 13 13 O 1.42104 * 104.27546 * 333.92935 * 12 11 10 14 14 O 1.42100 * 104.27712 * 206.07210 * 12 11 10 15 15 C 1.81400 * 104.44762 * 90.00065 * 12 11 10 16 16 C 1.53002 * 109.47104 * 180.02562 * 15 12 11 17 17 C 1.53004 * 109.46970 * 59.99807 * 16 15 12 18 18 C 1.53002 * 109.47130 * 300.00176 * 16 15 12 19 19 C 1.50694 * 109.47179 * 179.97438 * 16 15 12 20 20 H 1.07997 * 120.00207 * 359.92205 * 19 16 15 21 21 C 1.37884 * 120.00038 * 179.91669 * 19 16 15 22 22 N 1.31513 * 119.99744 * 1.84134 * 21 19 16 23 23 Si 1.86799 * 119.99890 * 181.84622 * 21 19 16 24 24 H 1.48494 * 109.47168 * 269.99646 * 23 21 19 25 25 H 1.48505 * 109.46641 * 149.99982 * 23 21 19 26 26 H 1.48500 * 109.47377 * 30.00197 * 23 21 19 27 27 C 1.46930 * 118.73387 * 306.64029 * 11 10 5 28 28 H 1.09009 * 109.47028 * 180.08311 * 1 2 3 29 29 H 1.09001 * 109.47199 * 300.08077 * 1 2 3 30 30 H 1.09000 * 109.47277 * 60.08531 * 1 2 3 31 31 H 1.08999 * 109.46155 * 181.38985 * 4 2 1 32 32 H 1.08999 * 109.44376 * 61.42244 * 4 2 1 33 33 H 0.96692 * 117.00063 * 180.02562 * 9 7 5 34 34 H 1.09005 * 109.59002 * 294.84696 * 10 5 4 35 35 H 1.09001 * 109.70270 * 174.49451 * 10 5 4 36 36 H 1.08996 * 109.47159 * 60.00511 * 15 12 11 37 37 H 1.09003 * 109.47210 * 299.99625 * 15 12 11 38 38 H 1.09000 * 109.47035 * 171.65249 * 17 16 15 39 39 H 1.09000 * 109.47358 * 291.65475 * 17 16 15 40 40 H 1.09001 * 109.46728 * 51.65359 * 17 16 15 41 41 H 1.08998 * 109.47008 * 308.63914 * 18 16 15 42 42 H 1.09002 * 109.47300 * 68.63059 * 18 16 15 43 43 H 1.08997 * 109.47166 * 188.63344 * 18 16 15 44 44 H 0.97001 * 120.00568 * 356.07801 * 22 21 19 45 45 H 1.08999 * 109.58078 * 173.14306 * 27 11 10 46 46 H 1.08995 * 109.58658 * 293.57014 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 1.5030 -2.1559 -1.2658 6 1 0.4133 -2.1355 -1.2539 7 6 1.9795 -2.8574 -2.5116 8 8 2.6757 -2.2711 -3.3063 9 8 1.6304 -4.1334 -2.7385 10 6 2.0141 -2.9039 -0.0306 11 7 1.6516 -2.1381 1.1697 12 16 0.8191 -2.8552 2.4087 13 8 0.1062 -3.9145 1.7849 14 8 0.1333 -1.7813 3.0378 15 6 2.1100 -3.5128 3.5004 16 6 1.4596 -4.2085 4.6978 17 6 0.5766 -5.3560 4.2031 18 6 0.6032 -3.2021 5.4691 19 6 2.5319 -4.7553 5.6044 20 1 3.5732 -4.6213 5.3513 21 6 2.1837 -5.4267 6.7573 22 7 0.9158 -5.6216 7.0473 23 14 3.5128 -6.0595 7.9073 24 1 3.8917 -7.4403 7.5137 25 1 2.9998 -6.0652 9.3009 26 1 4.7033 -5.1760 7.8216 27 6 2.0364 -0.7222 1.2472 28 1 -0.3633 -1.0278 0.0015 29 1 -0.3634 0.5151 0.8893 30 1 -0.3634 0.5125 -0.8907 31 1 3.1305 -0.7444 -1.2352 32 1 1.6985 -0.1958 -2.1387 33 1 1.9604 -4.5411 -3.5508 34 1 3.0981 -3.0042 -0.0866 35 1 1.5576 -3.8927 0.0152 36 1 2.7392 -2.6953 3.8525 37 1 2.7197 -4.2301 2.9511 38 1 0.2321 -5.9425 5.0548 39 1 -0.2830 -4.9494 3.6704 40 1 1.1519 -5.9936 3.5317 41 1 1.1956 -2.3140 5.6887 42 1 -0.2606 -2.9226 4.8660 43 1 0.2645 -3.6529 6.4019 44 1 0.2250 -5.2441 6.4805 45 1 1.5925 -0.2710 2.1346 46 1 3.1222 -0.6409 1.2975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263277326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:30 Heat of formation + Delta-G solvation = -165.756918 kcal Electronic energy + Delta-G solvation = -29042.668575 eV Core-core repulsion = 25059.489760 eV Total energy + Delta-G solvation = -3983.178815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.85710 -38.82573 -36.85281 -36.77986 -36.38255 -35.47950 -33.33714 -32.37362 -31.57558 -27.17984 -26.88460 -26.09695 -25.32904 -24.94319 -24.35486 -21.71068 -19.65927 -19.46006 -18.55331 -18.21766 -17.77519 -16.99035 -16.64210 -16.41631 -15.74626 -15.46043 -14.70154 -14.52793 -14.32990 -14.16214 -13.81705 -13.80536 -13.41557 -13.26658 -13.23414 -12.85280 -12.44134 -12.26904 -12.02525 -11.93288 -11.80005 -11.56912 -11.48906 -11.47365 -11.15845 -11.13979 -10.99787 -10.93357 -10.75663 -10.61180 -10.57804 -10.53638 -10.31530 -10.13406 -9.96609 -9.92257 -9.07859 -8.44167 -8.34145 -6.31619 -4.18943 0.63635 1.91158 2.69820 2.96318 3.38274 3.41065 3.56710 4.19091 4.23766 4.40203 4.45447 4.49209 4.60462 4.74433 4.87242 4.95096 5.12458 5.14453 5.24950 5.38965 5.44835 5.48215 5.50729 5.54124 5.62583 5.66077 5.77965 5.85818 5.91546 6.05471 6.12820 6.17157 6.24804 6.38125 6.45047 6.51258 6.57978 6.71779 6.99407 7.02247 7.43153 7.53038 7.62542 8.06049 8.29883 8.75231 9.52266 10.93421 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.019502 B = 0.003573 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.389912 B = 7835.031747 C = 8337.023432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.101 4.101 3 H 0.089 0.911 4 C -0.096 4.096 5 C -0.096 4.096 6 H 0.119 0.881 7 C 0.488 3.512 8 O -0.515 6.515 9 O -0.511 6.511 10 C 0.129 3.871 11 N -1.005 6.005 12 S 2.589 3.411 13 O -0.959 6.959 14 O -0.957 6.957 15 C -0.575 4.575 16 C 0.066 3.934 17 C -0.175 4.175 18 C -0.173 4.173 19 C -0.581 4.581 20 H 0.054 0.946 21 C 0.024 3.976 22 N -0.915 5.915 23 Si 1.070 2.930 24 H -0.287 1.287 25 H -0.283 1.283 26 H -0.289 1.289 27 C 0.116 3.884 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.410 0.590 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.084 0.916 39 H 0.032 0.968 40 H 0.046 0.954 41 H 0.047 0.953 42 H 0.032 0.968 43 H 0.081 0.919 44 H 0.282 0.718 45 H 0.100 0.900 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.551 8.652 -16.587 18.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.121 4.121 3 H 0.108 0.892 4 C -0.134 4.134 5 C -0.117 4.117 6 H 0.137 0.863 7 C 0.329 3.671 8 O -0.403 6.403 9 O -0.322 6.322 10 C 0.003 3.997 11 N -0.840 5.840 12 S 2.689 3.311 13 O -0.950 6.950 14 O -0.947 6.947 15 C -0.708 4.708 16 C 0.063 3.937 17 C -0.233 4.233 18 C -0.231 4.231 19 C -0.620 4.620 20 H 0.072 0.928 21 C -0.180 4.180 22 N -0.555 5.555 23 Si 0.898 3.102 24 H -0.214 1.214 25 H -0.209 1.209 26 H -0.215 1.215 27 C -0.009 4.009 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.269 0.731 34 H 0.091 0.909 35 H 0.126 0.874 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.103 0.897 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.051 0.949 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.118 0.882 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.872 8.135 -14.995 17.161 hybrid contribution 0.759 0.485 -1.976 2.171 sum 2.631 8.619 -16.970 19.215 Atomic orbital electron populations 1.21931 0.94628 1.02358 1.02218 1.21380 0.96863 0.99549 0.94282 0.89238 1.21445 1.01411 0.92038 0.98481 1.21484 1.04077 0.95992 0.90144 0.86349 1.23381 0.76523 0.79679 0.87486 1.90713 1.35721 1.66480 1.47427 1.84598 1.72002 1.27906 1.47701 1.21257 1.00575 0.95381 0.82488 1.57996 1.75939 1.18777 1.31322 1.05853 0.76809 0.74324 0.74158 1.93548 1.69770 1.57062 1.74575 1.93542 1.70821 1.54260 1.76116 1.30493 1.16280 1.11098 1.12941 1.18095 0.94549 0.91504 0.89507 1.22471 0.98342 1.00822 1.01712 1.22440 0.98421 0.99074 1.03174 1.21732 0.92305 1.40112 1.07826 0.92811 1.25758 1.00461 0.94666 0.97152 1.70827 1.00143 1.42466 1.42023 0.83539 0.74237 0.76203 0.76242 1.21409 1.20903 1.21508 1.21476 1.00069 0.79906 0.99462 0.92527 0.91617 0.92552 0.90623 0.90662 0.73127 0.90891 0.87363 0.86219 0.86259 0.89712 0.94940 0.93458 0.93421 0.94862 0.90014 0.90105 0.88216 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.69 37.15 0.32 -1.26 16 2 C -0.10 -0.93 3.20 -90.72 -0.29 -1.22 16 3 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 4 C -0.10 -0.89 4.01 -26.69 -0.11 -0.99 16 5 C -0.10 -0.99 2.44 -91.65 -0.22 -1.22 16 6 H 0.12 1.22 6.34 -51.93 -0.33 0.90 16 7 C 0.49 5.08 7.63 36.01 0.27 5.36 16 8 O -0.52 -6.48 16.74 -18.75 -0.31 -6.80 16 9 O -0.51 -4.43 13.35 -39.26 -0.52 -4.95 16 10 C 0.13 1.48 5.64 -3.71 -0.02 1.46 16 11 N -1.00 -13.02 2.67 -113.77 -0.30 -13.33 16 12 S 2.59 45.19 4.49 -107.50 -0.48 44.71 16 13 O -0.96 -18.85 14.39 -57.54 -0.83 -19.67 16 14 O -0.96 -18.47 14.39 -57.54 -0.83 -19.30 16 15 C -0.57 -10.88 5.10 37.16 0.19 -10.69 16 16 C 0.07 1.56 0.52 -155.66 -0.08 1.48 16 17 C -0.18 -4.19 7.36 37.16 0.27 -3.91 16 18 C -0.17 -4.09 7.35 37.16 0.27 -3.82 16 19 C -0.58 -15.25 8.01 -34.44 -0.28 -15.52 16 20 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 21 C 0.02 0.65 5.09 -17.82 -0.09 0.56 16 22 N -0.91 -26.02 12.09 55.43 0.67 -25.35 16 23 Si 1.07 24.07 29.90 -169.99 -5.08 18.98 16 24 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 27 C 0.12 1.25 5.79 -3.93 -0.02 1.23 16 28 H 0.06 0.66 5.97 -51.92 -0.31 0.35 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.69 8.13 -51.93 -0.42 0.27 16 32 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 33 H 0.41 1.72 9.10 45.56 0.41 2.13 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.11 1.33 6.86 -51.93 -0.36 0.98 16 36 H 0.12 2.06 8.14 -51.93 -0.42 1.64 16 37 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 38 H 0.08 2.18 5.18 -51.93 -0.27 1.91 16 39 H 0.03 0.73 6.03 -51.93 -0.31 0.41 16 40 H 0.05 1.07 8.13 -51.93 -0.42 0.65 16 41 H 0.05 1.06 8.13 -51.93 -0.42 0.64 16 42 H 0.03 0.74 6.05 -51.93 -0.31 0.42 16 43 H 0.08 2.08 5.27 -51.93 -0.27 1.81 16 44 H 0.28 7.88 3.61 -40.82 -0.15 7.73 16 45 H 0.10 1.15 6.85 -51.93 -0.36 0.79 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 358.62 15.07 5.40 5.40 Total: -1.00 -33.80 358.62 -8.17 -41.97 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -6.10 Total: 6.89 kcal Atomic # 6 Polarization: -28.77 SS G_CDS: 0.22 Total: -28.55 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.37 Total: -38.68 kcal Atomic # 8 Polarization: -48.23 SS G_CDS: -2.49 Total: -50.73 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -5.08 Total: 18.98 kcal Atomic # 16 Polarization: 45.19 SS G_CDS: -0.48 Total: 44.71 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.80 -8.17 -41.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263277326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.788 kcal (2) G-P(sol) polarization free energy of solvation -33.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds