Wall clock time and date at job start Tue Mar 31 2020 17:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.52147 * 2 1 4 4 C 1.53041 * 109.50041 * 239.91630 * 2 1 3 5 5 C 1.53042 * 109.53595 * 301.41235 * 4 2 1 6 6 H 1.08997 * 109.49367 * 58.58494 * 5 4 2 7 7 C 1.50704 * 109.52006 * 178.66633 * 5 4 2 8 8 O 1.20825 * 120.00251 * 359.84965 * 7 5 4 9 9 O 1.34230 * 119.99836 * 179.85707 * 7 5 4 10 10 C 1.53186 * 109.31078 * 298.63240 * 5 4 2 11 11 N 1.46925 * 108.77919 * 54.63971 * 10 5 4 12 12 S 1.65599 * 120.63446 * 126.36484 * 11 10 5 13 13 O 1.42104 * 104.27546 * 333.92935 * 12 11 10 14 14 O 1.42100 * 104.27712 * 206.07210 * 12 11 10 15 15 C 1.81400 * 104.44762 * 90.00065 * 12 11 10 16 16 C 1.53002 * 109.47104 * 180.02562 * 15 12 11 17 17 C 1.53004 * 109.46970 * 59.99807 * 16 15 12 18 18 C 1.53002 * 109.47130 * 300.00176 * 16 15 12 19 19 C 1.50694 * 109.47179 * 179.97438 * 16 15 12 20 20 H 1.07997 * 120.00207 * 359.92205 * 19 16 15 21 21 C 1.37884 * 120.00038 * 179.91669 * 19 16 15 22 22 N 1.31513 * 119.99744 * 1.84134 * 21 19 16 23 23 Si 1.86799 * 119.99890 * 181.84622 * 21 19 16 24 24 H 1.48494 * 109.47168 * 269.99646 * 23 21 19 25 25 H 1.48505 * 109.46641 * 149.99982 * 23 21 19 26 26 H 1.48500 * 109.47377 * 30.00197 * 23 21 19 27 27 C 1.46930 * 118.73387 * 306.64029 * 11 10 5 28 28 H 1.09009 * 109.47028 * 180.08311 * 1 2 3 29 29 H 1.09001 * 109.47199 * 300.08077 * 1 2 3 30 30 H 1.09000 * 109.47277 * 60.08531 * 1 2 3 31 31 H 1.08999 * 109.46155 * 181.38985 * 4 2 1 32 32 H 1.08999 * 109.44376 * 61.42244 * 4 2 1 33 33 H 0.96692 * 117.00063 * 180.02562 * 9 7 5 34 34 H 1.09005 * 109.59002 * 294.84696 * 10 5 4 35 35 H 1.09001 * 109.70270 * 174.49451 * 10 5 4 36 36 H 1.08996 * 109.47159 * 60.00511 * 15 12 11 37 37 H 1.09003 * 109.47210 * 299.99625 * 15 12 11 38 38 H 1.09000 * 109.47035 * 171.65249 * 17 16 15 39 39 H 1.09000 * 109.47358 * 291.65475 * 17 16 15 40 40 H 1.09001 * 109.46728 * 51.65359 * 17 16 15 41 41 H 1.08998 * 109.47008 * 308.63914 * 18 16 15 42 42 H 1.09002 * 109.47300 * 68.63059 * 18 16 15 43 43 H 1.08997 * 109.47166 * 188.63344 * 18 16 15 44 44 H 0.97001 * 120.00568 * 356.07801 * 22 21 19 45 45 H 1.08999 * 109.58078 * 173.14306 * 27 11 10 46 46 H 1.08995 * 109.58658 * 293.57014 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 1.5030 -2.1559 -1.2658 6 1 0.4133 -2.1355 -1.2539 7 6 1.9795 -2.8574 -2.5116 8 8 2.6757 -2.2711 -3.3063 9 8 1.6304 -4.1334 -2.7385 10 6 2.0141 -2.9039 -0.0306 11 7 1.6516 -2.1381 1.1697 12 16 0.8191 -2.8552 2.4087 13 8 0.1062 -3.9145 1.7849 14 8 0.1333 -1.7813 3.0378 15 6 2.1100 -3.5128 3.5004 16 6 1.4596 -4.2085 4.6978 17 6 0.5766 -5.3560 4.2031 18 6 0.6032 -3.2021 5.4691 19 6 2.5319 -4.7553 5.6044 20 1 3.5732 -4.6213 5.3513 21 6 2.1837 -5.4267 6.7573 22 7 0.9158 -5.6216 7.0473 23 14 3.5128 -6.0595 7.9073 24 1 3.8917 -7.4403 7.5137 25 1 2.9998 -6.0652 9.3009 26 1 4.7033 -5.1760 7.8216 27 6 2.0364 -0.7222 1.2472 28 1 -0.3633 -1.0278 0.0015 29 1 -0.3634 0.5151 0.8893 30 1 -0.3634 0.5125 -0.8907 31 1 3.1305 -0.7444 -1.2352 32 1 1.6985 -0.1958 -2.1387 33 1 1.9604 -4.5411 -3.5508 34 1 3.0981 -3.0042 -0.0866 35 1 1.5576 -3.8927 0.0152 36 1 2.7392 -2.6953 3.8525 37 1 2.7197 -4.2301 2.9511 38 1 0.2321 -5.9425 5.0548 39 1 -0.2830 -4.9494 3.6704 40 1 1.1519 -5.9936 3.5317 41 1 1.1956 -2.3140 5.6887 42 1 -0.2606 -2.9226 4.8660 43 1 0.2645 -3.6529 6.4019 44 1 0.2250 -5.2441 6.4805 45 1 1.5925 -0.2710 2.1346 46 1 3.1222 -0.6409 1.2975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263277326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:30 Heat of formation + Delta-G solvation = -188.634790 kcal Electronic energy + Delta-G solvation = -29043.660634 eV Core-core repulsion = 25059.489760 eV Total energy + Delta-G solvation = -3984.170874 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.65764 -39.66306 -38.69871 -38.24521 -37.15972 -36.96116 -34.24782 -33.51063 -33.20814 -28.55711 -28.01133 -27.98004 -26.93809 -26.12947 -25.29142 -22.49578 -21.40623 -20.56469 -19.51820 -19.25679 -19.04739 -18.58956 -17.62885 -17.40947 -17.05482 -16.68660 -15.66617 -15.59513 -15.57366 -15.36620 -15.17140 -15.03241 -14.85750 -14.66873 -14.46951 -14.04900 -13.88145 -13.59156 -13.29975 -13.22368 -13.10494 -12.91185 -12.76660 -12.60311 -12.52078 -12.49258 -12.33323 -12.27561 -11.96226 -11.93991 -11.84097 -11.81367 -11.77173 -11.75011 -11.54771 -11.32989 -10.45551 -10.36267 -9.96906 -8.40249 -6.29159 -0.74802 1.10451 1.57254 1.64401 1.66442 1.81208 2.10520 2.60205 2.81692 3.13834 3.23581 3.45021 3.61042 3.73193 3.83840 3.93974 4.04533 4.08563 4.17367 4.31395 4.32530 4.43127 4.59333 4.61215 4.63540 4.67277 4.74373 4.74964 4.81580 4.84405 4.90366 4.94135 5.07871 5.11379 5.14122 5.20092 5.23719 5.37926 5.52879 5.57774 5.59514 5.61406 6.07821 6.25654 6.67394 6.96648 7.50066 8.85289 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.019502 B = 0.003573 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.389912 B = 7835.031747 C = 8337.023432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.095 4.095 3 H 0.117 0.883 4 C -0.091 4.091 5 C -0.097 4.097 6 H 0.115 0.885 7 C 0.496 3.504 8 O -0.537 6.537 9 O -0.513 6.513 10 C 0.123 3.877 11 N -0.995 5.995 12 S 2.610 3.390 13 O -0.985 6.985 14 O -0.978 6.978 15 C -0.583 4.583 16 C 0.051 3.949 17 C -0.171 4.171 18 C -0.168 4.168 19 C -0.589 4.589 20 H 0.056 0.944 21 C -0.025 4.025 22 N -0.943 5.943 23 Si 1.111 2.889 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.270 1.270 27 C 0.104 3.896 28 H 0.036 0.964 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.429 0.571 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.060 0.940 39 H 0.038 0.962 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.039 0.961 43 H 0.057 0.943 44 H 0.276 0.724 45 H 0.091 0.909 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.361 9.737 -18.134 21.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.114 4.114 3 H 0.135 0.865 4 C -0.129 4.129 5 C -0.118 4.118 6 H 0.133 0.867 7 C 0.339 3.661 8 O -0.427 6.427 9 O -0.326 6.326 10 C -0.003 4.003 11 N -0.833 5.833 12 S 2.708 3.292 13 O -0.975 6.975 14 O -0.968 6.968 15 C -0.714 4.714 16 C 0.049 3.951 17 C -0.229 4.229 18 C -0.226 4.226 19 C -0.628 4.628 20 H 0.074 0.926 21 C -0.224 4.224 22 N -0.584 5.584 23 Si 0.934 3.066 24 H -0.204 1.204 25 H -0.214 1.214 26 H -0.195 1.195 27 C -0.020 4.020 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.291 0.709 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.079 0.921 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.109 0.891 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.687 9.200 -16.549 19.291 hybrid contribution 0.162 0.163 -1.603 1.619 sum 3.849 9.364 -18.152 20.785 Atomic orbital electron populations 1.21971 0.95749 1.01194 1.02624 1.21400 0.95858 1.00788 0.93401 0.86507 1.21430 1.01747 0.91110 0.98571 1.21490 1.03984 0.96733 0.89603 0.86709 1.23277 0.75868 0.79901 0.87101 1.90709 1.36802 1.67060 1.48175 1.84564 1.71824 1.27218 1.49034 1.21446 1.01963 0.94803 0.82077 1.57595 1.75655 1.19714 1.30316 1.04918 0.76387 0.73613 0.74242 1.93510 1.70632 1.58374 1.74965 1.93509 1.71513 1.54660 1.77153 1.30475 1.17211 1.11841 1.11922 1.18113 0.94179 0.91678 0.91158 1.22401 0.98808 1.00916 1.00781 1.22367 0.98878 0.99194 1.02193 1.22084 0.93048 1.39531 1.08142 0.92601 1.27007 1.01377 0.95007 0.98965 1.70902 1.00915 1.43948 1.42655 0.83002 0.72755 0.76570 0.74274 1.20363 1.21430 1.19489 1.21819 1.01851 0.78276 1.00032 0.94466 0.92594 0.90838 0.89900 0.90105 0.70888 0.88547 0.88512 0.84572 0.84829 0.92130 0.94328 0.92982 0.92693 0.94239 0.92417 0.90865 0.89089 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 8.69 71.98 0.63 -2.35 16 2 C -0.09 -1.46 3.20 -10.86 -0.03 -1.50 16 3 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 4 C -0.09 -1.40 4.01 30.62 0.12 -1.28 16 5 C -0.10 -1.80 2.44 -11.46 -0.03 -1.83 16 6 H 0.12 2.22 6.34 -2.39 -0.02 2.21 16 7 C 0.50 9.30 7.63 71.24 0.54 9.84 16 8 O -0.54 -12.35 16.74 21.97 0.37 -11.98 16 9 O -0.51 -7.90 13.35 -51.41 -0.69 -8.59 16 10 C 0.12 2.54 5.64 86.36 0.49 3.03 16 11 N -0.99 -23.83 2.67 -513.85 -1.37 -25.20 16 12 S 2.61 88.82 4.49 -56.49 -0.25 88.56 16 13 O -0.98 -38.38 14.39 -127.65 -1.84 -40.22 16 14 O -0.98 -37.26 14.39 -127.65 -1.84 -39.10 16 15 C -0.58 -21.33 5.10 71.98 0.37 -20.96 16 16 C 0.05 2.40 0.52 -52.93 -0.03 2.38 16 17 C -0.17 -8.28 7.36 71.98 0.53 -7.75 16 18 C -0.17 -8.05 7.35 71.98 0.53 -7.52 16 19 C -0.59 -30.77 8.01 25.60 0.21 -30.56 16 20 H 0.06 2.82 7.74 -2.91 -0.02 2.80 16 21 C -0.02 -1.33 5.09 84.66 0.43 -0.90 16 22 N -0.94 -54.80 12.09 21.45 0.26 -54.54 16 23 Si 1.11 48.13 29.90 68.60 2.05 50.18 16 24 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 25 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 26 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 27 C 0.10 1.97 5.79 86.22 0.50 2.46 16 28 H 0.04 0.84 5.97 -2.38 -0.01 0.82 16 29 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.20 8.13 -2.39 -0.02 1.18 16 32 H 0.08 1.20 8.07 -2.39 -0.02 1.18 16 33 H 0.43 2.70 9.10 -74.06 -0.67 2.03 16 34 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.10 2.25 6.86 -2.39 -0.02 2.24 16 36 H 0.14 4.44 8.14 -2.39 -0.02 4.42 16 37 H 0.13 4.42 8.14 -2.39 -0.02 4.40 16 38 H 0.06 3.21 5.18 -2.39 -0.01 3.20 16 39 H 0.04 1.77 6.03 -2.39 -0.01 1.75 16 40 H 0.05 2.38 8.13 -2.39 -0.02 2.36 16 41 H 0.05 2.45 8.13 -2.39 -0.02 2.43 16 42 H 0.04 1.78 6.05 -2.39 -0.01 1.77 16 43 H 0.06 3.02 5.27 -2.39 -0.01 3.01 16 44 H 0.28 15.92 3.61 -92.71 -0.33 15.59 16 45 H 0.09 1.91 6.85 -2.39 -0.02 1.90 16 46 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -72.73 358.62 1.70 -71.02 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.76 Total: 26.80 kcal Atomic # 6 Polarization: -61.19 SS G_CDS: 4.25 Total: -56.94 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -1.11 Total: -79.74 kcal Atomic # 8 Polarization: -95.89 SS G_CDS: -3.99 Total: -99.89 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.05 Total: 50.18 kcal Atomic # 16 Polarization: 88.82 SS G_CDS: -0.25 Total: 88.56 kcal Total: -72.73 1.70 -71.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263277326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.612 kcal (2) G-P(sol) polarization free energy of solvation -72.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds