Wall clock time and date at job start Tue Mar 31 2020 17:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.50069 * 2 1 4 4 C 1.53039 * 109.49457 * 239.93200 * 2 1 3 5 5 C 1.53042 * 109.53770 * 178.65100 * 4 2 1 6 6 H 1.09002 * 109.52293 * 301.40061 * 5 4 2 7 7 C 1.50700 * 109.50119 * 181.31735 * 5 4 2 8 8 O 1.20829 * 119.99638 * 0.16183 * 7 5 4 9 9 O 1.34228 * 119.99903 * 180.16363 * 7 5 4 10 10 C 1.53194 * 109.31169 * 61.36342 * 5 4 2 11 11 N 1.46927 * 108.77726 * 305.36481 * 10 5 4 12 12 S 1.65599 * 120.63350 * 233.58522 * 11 10 5 13 13 O 1.42105 * 104.27655 * 333.92859 * 12 11 10 14 14 O 1.42101 * 104.27764 * 206.07296 * 12 11 10 15 15 C 1.81395 * 104.44748 * 90.00165 * 12 11 10 16 16 C 1.52999 * 109.46986 * 180.02562 * 15 12 11 17 17 C 1.53002 * 109.47371 * 299.99973 * 16 15 12 18 18 C 1.53002 * 109.47538 * 59.99873 * 16 15 12 19 19 C 1.50700 * 109.47535 * 180.02562 * 16 15 12 20 20 H 1.08006 * 119.99840 * 359.97438 * 19 16 15 21 21 C 1.37873 * 120.00463 * 180.02562 * 19 16 15 22 22 N 1.31518 * 120.00062 * 359.97438 * 21 19 16 23 23 Si 1.86797 * 120.00103 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.47443 * 59.99483 * 23 21 19 25 25 H 1.48505 * 109.47343 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47001 * 299.99442 * 23 21 19 27 27 C 1.46929 * 118.73582 * 53.86011 * 11 10 5 28 28 H 1.08998 * 109.47272 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47264 * 300.06654 * 1 2 3 30 30 H 1.08999 * 109.47096 * 60.06837 * 1 2 3 31 31 H 1.09000 * 109.46377 * 58.63363 * 4 2 1 32 32 H 1.08996 * 109.45212 * 298.66087 * 4 2 1 33 33 H 0.96698 * 116.99711 * 180.02562 * 9 7 5 34 34 H 1.09002 * 109.58871 * 185.57868 * 10 5 4 35 35 H 1.09000 * 109.58598 * 65.15759 * 10 5 4 36 36 H 1.09003 * 109.47393 * 299.99669 * 15 12 11 37 37 H 1.08994 * 109.47678 * 60.00285 * 15 12 11 38 38 H 1.09003 * 109.46921 * 59.99370 * 17 16 15 39 39 H 1.08991 * 109.47533 * 180.02562 * 17 16 15 40 40 H 1.09005 * 109.46766 * 300.00134 * 17 16 15 41 41 H 1.09004 * 109.47056 * 59.99837 * 18 16 15 42 42 H 1.08995 * 109.47291 * 180.02562 * 18 16 15 43 43 H 1.08996 * 109.46772 * 300.00176 * 18 16 15 44 44 H 0.96996 * 119.99792 * 180.02562 * 22 21 19 45 45 H 1.09002 * 109.58586 * 65.92547 * 27 11 10 46 46 H 1.09000 * 109.58637 * 186.35213 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0407 -0.7228 -1.2485 5 6 3.5708 -0.6941 -1.2666 6 1 3.9159 0.3398 -1.2550 7 6 4.0721 -1.3777 -2.5126 8 8 3.2864 -1.8381 -3.3067 9 8 5.3913 -1.4751 -2.7401 10 6 4.1059 -1.4255 -0.0316 11 7 3.5053 -0.8283 1.1690 12 16 4.4595 -0.2839 2.4082 13 8 5.6461 -1.0587 2.3031 14 8 3.6267 -0.3714 3.5562 15 6 4.7929 1.4504 1.9944 16 6 5.6772 2.0722 3.0772 17 6 4.9593 1.9987 4.4263 18 6 6.9981 1.3046 3.1599 19 6 5.9537 3.5132 2.7338 20 1 5.5405 3.9426 1.8331 21 6 6.7351 4.2832 3.5689 22 7 7.2388 3.7603 4.6655 23 14 7.0785 6.0693 3.1429 24 1 5.7965 6.8145 3.0630 25 1 7.9367 6.6728 4.1939 26 1 7.7749 6.1407 1.8333 27 6 2.0418 -0.7287 1.2518 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5149 0.8894 30 1 -0.3633 0.5128 -0.8906 31 1 1.6577 -0.2244 -2.1390 32 1 1.6972 -1.7571 -1.2352 33 1 5.6648 -1.9219 -3.5529 34 1 5.1902 -1.3230 0.0127 35 1 3.8387 -2.4808 -0.0875 36 1 5.3048 1.5028 1.0334 37 1 3.8520 1.9973 1.9351 38 1 4.7589 0.9565 4.6749 39 1 5.5890 2.4420 5.1976 40 1 4.0183 2.5456 4.3674 41 1 7.5096 1.3569 2.1988 42 1 7.6279 1.7472 3.9316 43 1 6.7977 0.2624 3.4086 44 1 7.7882 4.3021 5.2532 45 1 1.6096 -1.7283 1.2984 46 1 1.7636 -0.1662 2.1431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263277328.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:34 Heat of formation + Delta-G solvation = -175.632330 kcal Electronic energy + Delta-G solvation = -28948.389124 eV Core-core repulsion = 24964.782079 eV Total energy + Delta-G solvation = -3983.607045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.76805 -38.59337 -36.68854 -36.35161 -36.30179 -35.36695 -33.60548 -32.45206 -31.68048 -27.01712 -26.73142 -25.74252 -25.30350 -25.23432 -24.03316 -21.22922 -20.24341 -19.36413 -18.58704 -18.22638 -17.50624 -16.57782 -16.40380 -16.00168 -15.77361 -15.36151 -14.97686 -14.77759 -14.44920 -14.33807 -13.73778 -13.64516 -13.16594 -13.05798 -12.88753 -12.53256 -12.42599 -12.34177 -12.10170 -11.91106 -11.77600 -11.54346 -11.50352 -11.14106 -11.12426 -11.05647 -10.97205 -10.90990 -10.84404 -10.71674 -10.61842 -10.40193 -10.29997 -10.12501 -9.67839 -9.60952 -9.02541 -8.67541 -8.41956 -6.05340 -4.17565 0.74144 1.93943 2.72278 3.04331 3.25366 3.31204 3.32534 4.24176 4.29633 4.35727 4.48042 4.52970 4.60630 4.76417 4.86043 5.00816 5.11897 5.19838 5.23399 5.38744 5.45847 5.52418 5.58428 5.62795 5.64728 5.69619 5.76901 5.88567 5.90755 6.09910 6.15144 6.26708 6.34575 6.54151 6.67536 6.76922 6.87716 7.01417 7.28824 7.47694 7.65364 7.65575 7.95725 8.06973 8.30551 8.80574 9.47965 10.95925 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013720 B = 0.003976 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.346753 B = 7039.893066 C = 7390.648267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 H 0.082 0.918 4 C -0.095 4.095 5 C -0.101 4.101 6 H 0.118 0.882 7 C 0.488 3.512 8 O -0.515 6.515 9 O -0.511 6.511 10 C 0.134 3.866 11 N -1.008 6.008 12 S 2.590 3.410 13 O -0.959 6.959 14 O -0.958 6.958 15 C -0.581 4.581 16 C 0.082 3.918 17 C -0.163 4.163 18 C -0.164 4.164 19 C -0.502 4.502 20 H 0.058 0.942 21 C 0.065 3.935 22 N -0.883 5.883 23 Si 0.896 3.104 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.277 1.277 27 C 0.122 3.878 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.410 0.590 34 H 0.106 0.894 35 H 0.074 0.926 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.027 0.973 39 H 0.095 0.905 40 H 0.036 0.964 41 H 0.037 0.963 42 H 0.095 0.905 43 H 0.027 0.973 44 H 0.263 0.737 45 H 0.071 0.929 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.299 -8.795 -11.747 17.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 H 0.101 0.899 4 C -0.132 4.132 5 C -0.122 4.122 6 H 0.136 0.864 7 C 0.330 3.670 8 O -0.403 6.403 9 O -0.322 6.322 10 C 0.008 3.992 11 N -0.842 5.842 12 S 2.690 3.310 13 O -0.949 6.949 14 O -0.949 6.949 15 C -0.715 4.715 16 C 0.080 3.920 17 C -0.221 4.221 18 C -0.221 4.221 19 C -0.542 4.542 20 H 0.076 0.924 21 C -0.137 4.137 22 N -0.521 5.521 23 Si 0.724 3.276 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.203 1.203 27 C -0.004 4.004 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.269 0.731 34 H 0.124 0.876 35 H 0.093 0.907 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.046 0.954 39 H 0.114 0.886 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.114 0.886 43 H 0.046 0.954 44 H 0.073 0.927 45 H 0.090 0.910 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.252 -9.262 -10.681 16.895 hybrid contribution 0.317 1.310 -1.386 1.933 sum -8.935 -7.952 -12.066 16.990 Atomic orbital electron populations 1.21755 0.93937 1.02254 1.02359 1.21655 0.96364 1.00435 0.94531 0.89944 1.21461 0.91047 1.02309 0.98429 1.21558 0.98209 1.01977 0.90426 0.86398 1.23338 0.79979 0.76258 0.87425 1.90715 1.56918 1.45267 1.47429 1.84590 1.26097 1.73855 1.47687 1.21219 0.99149 0.96800 0.82077 1.58112 1.16115 1.76107 1.33864 1.05892 0.73352 0.78554 0.73240 1.93544 1.47260 1.68502 1.85633 1.93541 1.67718 1.87327 1.46297 1.30580 1.10078 1.20015 1.10805 1.17932 0.89910 0.95887 0.88281 1.22273 1.00118 0.98710 1.00994 1.22275 1.00399 0.96760 1.02697 1.20886 1.31515 0.93819 1.07939 0.92385 1.24930 0.95426 0.98398 0.94919 1.69789 1.33816 1.36147 1.12386 0.86602 0.78265 0.84699 0.78081 1.20291 1.21175 1.20282 1.21619 0.78899 1.01381 0.98457 0.92349 0.91904 0.92221 0.90628 0.90702 0.73081 0.87577 0.90734 0.86411 0.86379 0.95427 0.88642 0.94482 0.94430 0.88647 0.95407 0.92666 0.91035 0.88541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.20 37.16 0.34 -0.76 16 2 C -0.11 -1.01 2.88 -90.28 -0.26 -1.27 16 3 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 4 C -0.09 -0.88 3.74 -26.69 -0.10 -0.98 16 5 C -0.10 -1.01 2.78 -91.65 -0.25 -1.27 16 6 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 7 C 0.49 5.08 7.63 36.01 0.27 5.35 16 8 O -0.52 -6.53 16.74 -18.75 -0.31 -6.84 16 9 O -0.51 -4.42 13.35 -39.25 -0.52 -4.94 16 10 C 0.13 1.56 5.52 -3.71 -0.02 1.54 16 11 N -1.01 -13.41 3.21 -113.27 -0.36 -13.78 16 12 S 2.59 46.34 4.45 -107.50 -0.48 45.87 16 13 O -0.96 -19.40 14.34 -57.54 -0.83 -20.23 16 14 O -0.96 -19.33 14.34 -57.54 -0.82 -20.15 16 15 C -0.58 -10.83 5.12 37.16 0.19 -10.64 16 16 C 0.08 1.94 0.52 -155.66 -0.08 1.86 16 17 C -0.16 -3.93 7.77 37.16 0.29 -3.64 16 18 C -0.16 -3.94 7.78 37.16 0.29 -3.65 16 19 C -0.50 -12.87 8.01 -34.44 -0.28 -13.14 16 20 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 21 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 22 N -0.88 -23.75 9.35 55.43 0.52 -23.23 16 23 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 25 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 C 0.12 1.36 5.63 -3.49 -0.02 1.34 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.68 8.07 -51.93 -0.42 0.27 16 32 H 0.07 0.71 8.13 -51.93 -0.42 0.28 16 33 H 0.41 1.75 9.10 45.56 0.41 2.16 16 34 H 0.11 1.30 7.10 -51.93 -0.37 0.93 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.12 1.97 8.14 -51.92 -0.42 1.55 16 37 H 0.12 1.97 8.14 -51.93 -0.42 1.55 16 38 H 0.03 0.63 5.46 -51.93 -0.28 0.35 16 39 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 40 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 43 H 0.03 0.63 5.46 -51.93 -0.28 0.35 16 44 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.10 1.13 7.09 -51.93 -0.37 0.76 16 LS Contribution 366.54 15.07 5.52 5.52 Total: -1.00 -32.75 366.54 -8.58 -41.33 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.55 Total: 4.81 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 0.28 Total: -23.65 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.15 Total: -37.01 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -2.49 Total: -52.16 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 46.34 SS G_CDS: -0.48 Total: 45.87 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.75 -8.58 -41.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263277328.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.302 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds