Wall clock time and date at job start Tue Mar 31 2020 17:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.50069 * 2 1 4 4 C 1.53039 * 109.49457 * 239.93200 * 2 1 3 5 5 C 1.53042 * 109.53770 * 178.65100 * 4 2 1 6 6 H 1.09002 * 109.52293 * 301.40061 * 5 4 2 7 7 C 1.50700 * 109.50119 * 181.31735 * 5 4 2 8 8 O 1.20829 * 119.99638 * 0.16183 * 7 5 4 9 9 O 1.34228 * 119.99903 * 180.16363 * 7 5 4 10 10 C 1.53194 * 109.31169 * 61.36342 * 5 4 2 11 11 N 1.46927 * 108.77726 * 305.36481 * 10 5 4 12 12 S 1.65599 * 120.63350 * 233.58522 * 11 10 5 13 13 O 1.42105 * 104.27655 * 333.92859 * 12 11 10 14 14 O 1.42101 * 104.27764 * 206.07296 * 12 11 10 15 15 C 1.81395 * 104.44748 * 90.00165 * 12 11 10 16 16 C 1.52999 * 109.46986 * 180.02562 * 15 12 11 17 17 C 1.53002 * 109.47371 * 299.99973 * 16 15 12 18 18 C 1.53002 * 109.47538 * 59.99873 * 16 15 12 19 19 C 1.50700 * 109.47535 * 180.02562 * 16 15 12 20 20 H 1.08006 * 119.99840 * 359.97438 * 19 16 15 21 21 C 1.37873 * 120.00463 * 180.02562 * 19 16 15 22 22 N 1.31518 * 120.00062 * 359.97438 * 21 19 16 23 23 Si 1.86797 * 120.00103 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.47443 * 59.99483 * 23 21 19 25 25 H 1.48505 * 109.47343 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47001 * 299.99442 * 23 21 19 27 27 C 1.46929 * 118.73582 * 53.86011 * 11 10 5 28 28 H 1.08998 * 109.47272 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47264 * 300.06654 * 1 2 3 30 30 H 1.08999 * 109.47096 * 60.06837 * 1 2 3 31 31 H 1.09000 * 109.46377 * 58.63363 * 4 2 1 32 32 H 1.08996 * 109.45212 * 298.66087 * 4 2 1 33 33 H 0.96698 * 116.99711 * 180.02562 * 9 7 5 34 34 H 1.09002 * 109.58871 * 185.57868 * 10 5 4 35 35 H 1.09000 * 109.58598 * 65.15759 * 10 5 4 36 36 H 1.09003 * 109.47393 * 299.99669 * 15 12 11 37 37 H 1.08994 * 109.47678 * 60.00285 * 15 12 11 38 38 H 1.09003 * 109.46921 * 59.99370 * 17 16 15 39 39 H 1.08991 * 109.47533 * 180.02562 * 17 16 15 40 40 H 1.09005 * 109.46766 * 300.00134 * 17 16 15 41 41 H 1.09004 * 109.47056 * 59.99837 * 18 16 15 42 42 H 1.08995 * 109.47291 * 180.02562 * 18 16 15 43 43 H 1.08996 * 109.46772 * 300.00176 * 18 16 15 44 44 H 0.96996 * 119.99792 * 180.02562 * 22 21 19 45 45 H 1.09002 * 109.58586 * 65.92547 * 27 11 10 46 46 H 1.09000 * 109.58637 * 186.35213 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0407 -0.7228 -1.2485 5 6 3.5708 -0.6941 -1.2666 6 1 3.9159 0.3398 -1.2550 7 6 4.0721 -1.3777 -2.5126 8 8 3.2864 -1.8381 -3.3067 9 8 5.3913 -1.4751 -2.7401 10 6 4.1059 -1.4255 -0.0316 11 7 3.5053 -0.8283 1.1690 12 16 4.4595 -0.2839 2.4082 13 8 5.6461 -1.0587 2.3031 14 8 3.6267 -0.3714 3.5562 15 6 4.7929 1.4504 1.9944 16 6 5.6772 2.0722 3.0772 17 6 4.9593 1.9987 4.4263 18 6 6.9981 1.3046 3.1599 19 6 5.9537 3.5132 2.7338 20 1 5.5405 3.9426 1.8331 21 6 6.7351 4.2832 3.5689 22 7 7.2388 3.7603 4.6655 23 14 7.0785 6.0693 3.1429 24 1 5.7965 6.8145 3.0630 25 1 7.9367 6.6728 4.1939 26 1 7.7749 6.1407 1.8333 27 6 2.0418 -0.7287 1.2518 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5149 0.8894 30 1 -0.3633 0.5128 -0.8906 31 1 1.6577 -0.2244 -2.1390 32 1 1.6972 -1.7571 -1.2352 33 1 5.6648 -1.9219 -3.5529 34 1 5.1902 -1.3230 0.0127 35 1 3.8387 -2.4808 -0.0875 36 1 5.3048 1.5028 1.0334 37 1 3.8520 1.9973 1.9351 38 1 4.7589 0.9565 4.6749 39 1 5.5890 2.4420 5.1976 40 1 4.0183 2.5456 4.3674 41 1 7.5096 1.3569 2.1988 42 1 7.6279 1.7472 3.9316 43 1 6.7977 0.2624 3.4086 44 1 7.7882 4.3021 5.2532 45 1 1.6096 -1.7283 1.2984 46 1 1.7636 -0.1662 2.1431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263277328.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:33 Heat of formation + Delta-G solvation = -197.602404 kcal Electronic energy + Delta-G solvation = -28949.341818 eV Core-core repulsion = 24964.782079 eV Total energy + Delta-G solvation = -3984.559739 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.56737 -39.43923 -38.19048 -38.10612 -37.12360 -36.89435 -34.45930 -33.61144 -33.30385 -28.35578 -27.74522 -27.67204 -27.22589 -26.10633 -24.97308 -21.96786 -21.41842 -20.80201 -19.84071 -19.00545 -18.84358 -17.89148 -17.46474 -17.34907 -16.95195 -16.68395 -16.62440 -15.94605 -15.37329 -15.24284 -14.92774 -14.74443 -14.64279 -14.40164 -14.37761 -13.87713 -13.61131 -13.52082 -13.18423 -13.06214 -12.88046 -12.84988 -12.78346 -12.70078 -12.53313 -12.47060 -12.30383 -12.16741 -12.15840 -11.98573 -11.82418 -11.73010 -11.63821 -11.54214 -11.46938 -11.25167 -10.60972 -10.38961 -9.98352 -8.00822 -6.19292 -0.66483 1.13482 1.46831 1.47548 1.54300 1.71479 2.13763 2.45961 2.89879 3.18682 3.23160 3.49652 3.66055 3.76785 3.90732 3.97946 4.12516 4.19057 4.23291 4.40430 4.45548 4.62015 4.67221 4.71172 4.77248 4.85541 4.88215 4.88869 4.91326 5.00018 5.04375 5.09792 5.14708 5.21038 5.38490 5.40892 5.44601 5.52711 5.59878 5.62074 5.66747 5.99615 6.13674 6.36194 6.85343 6.99425 7.49034 8.98745 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013720 B = 0.003976 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.346753 B = 7039.893066 C = 7390.648267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 H 0.084 0.916 4 C -0.091 4.091 5 C -0.100 4.100 6 H 0.128 0.872 7 C 0.496 3.504 8 O -0.540 6.540 9 O -0.512 6.512 10 C 0.128 3.872 11 N -0.998 5.998 12 S 2.607 3.393 13 O -0.986 6.986 14 O -0.984 6.984 15 C -0.584 4.584 16 C 0.069 3.931 17 C -0.159 4.159 18 C -0.159 4.159 19 C -0.515 4.515 20 H 0.064 0.936 21 C 0.018 3.982 22 N -0.908 5.908 23 Si 0.952 3.048 24 H -0.272 1.272 25 H -0.289 1.289 26 H -0.272 1.272 27 C 0.112 3.888 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.429 0.571 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.031 0.969 39 H 0.069 0.931 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.069 0.931 43 H 0.031 0.969 44 H 0.261 0.739 45 H 0.086 0.914 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.487 -8.663 -13.674 19.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 H 0.103 0.897 4 C -0.128 4.128 5 C -0.121 4.121 6 H 0.146 0.854 7 C 0.338 3.662 8 O -0.430 6.430 9 O -0.325 6.325 10 C 0.003 3.997 11 N -0.835 5.835 12 S 2.706 3.294 13 O -0.976 6.976 14 O -0.975 6.975 15 C -0.717 4.717 16 C 0.067 3.933 17 C -0.217 4.217 18 C -0.217 4.217 19 C -0.554 4.554 20 H 0.082 0.918 21 C -0.181 4.181 22 N -0.547 5.547 23 Si 0.778 3.222 24 H -0.197 1.197 25 H -0.215 1.215 26 H -0.197 1.197 27 C -0.012 4.012 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.291 0.709 34 H 0.118 0.882 35 H 0.105 0.895 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.050 0.950 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.088 0.912 43 H 0.050 0.950 44 H 0.070 0.930 45 H 0.104 0.896 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.423 -9.125 -12.618 18.738 hybrid contribution 0.688 1.193 -0.825 1.605 sum -9.735 -7.933 -13.443 18.396 Atomic orbital electron populations 1.21753 0.92610 1.02889 1.02894 1.21628 0.97385 1.00136 0.93288 0.89749 1.21439 0.90405 1.02395 0.98590 1.21562 0.98787 1.02247 0.89464 0.85421 1.23292 0.80192 0.75592 0.87101 1.90712 1.57596 1.46377 1.48313 1.84554 1.25153 1.73847 1.48987 1.21379 0.98859 0.97648 0.81852 1.57704 1.16705 1.75543 1.33504 1.05068 0.72910 0.77956 0.73454 1.93502 1.48979 1.68872 1.86252 1.93501 1.68167 1.87472 1.48323 1.30507 1.10303 1.20964 1.09920 1.17921 0.90380 0.95551 0.89432 1.22198 0.99793 0.98736 1.00949 1.22202 1.00676 0.96906 1.01947 1.21253 1.31203 0.94985 1.07970 0.91780 1.25656 0.95567 1.01923 0.94957 1.69939 1.34359 1.37214 1.13174 0.85703 0.78117 0.80585 0.77746 1.19699 1.21509 1.19732 1.21904 0.77312 1.02580 0.99413 0.91719 0.91743 0.91345 0.90088 0.90727 0.70902 0.88233 0.89507 0.84482 0.84412 0.95020 0.91191 0.94030 0.94023 0.91189 0.94995 0.92990 0.89607 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.20 71.98 0.66 -1.13 16 2 C -0.10 -1.64 2.88 -10.57 -0.03 -1.67 16 3 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 4 C -0.09 -1.44 3.74 30.62 0.11 -1.33 16 5 C -0.10 -1.76 2.78 -11.46 -0.03 -1.79 16 6 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 7 C 0.50 9.22 7.63 71.24 0.54 9.76 16 8 O -0.54 -12.61 16.74 21.95 0.37 -12.24 16 9 O -0.51 -7.72 13.35 -51.40 -0.69 -8.40 16 10 C 0.13 2.72 5.52 86.36 0.48 3.20 16 11 N -1.00 -24.70 3.21 -512.27 -1.65 -26.35 16 12 S 2.61 90.65 4.45 -56.49 -0.25 90.39 16 13 O -0.99 -39.31 14.34 -127.65 -1.83 -41.14 16 14 O -0.98 -39.11 14.34 -127.65 -1.83 -40.94 16 15 C -0.58 -20.91 5.12 71.98 0.37 -20.54 16 16 C 0.07 3.24 0.52 -52.93 -0.03 3.21 16 17 C -0.16 -7.71 7.77 71.98 0.56 -7.15 16 18 C -0.16 -7.75 7.78 71.98 0.56 -7.19 16 19 C -0.52 -26.04 8.01 25.60 0.21 -25.83 16 20 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 21 C 0.02 0.96 5.15 84.65 0.44 1.39 16 22 N -0.91 -49.64 9.35 21.45 0.20 -49.44 16 23 Si 0.95 41.34 29.54 68.60 2.03 43.36 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 25 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 27 C 0.11 2.27 5.63 86.51 0.49 2.76 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 1.24 8.07 -2.39 -0.02 1.22 16 32 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16 33 H 0.43 2.71 9.10 -74.06 -0.67 2.04 16 34 H 0.10 2.27 7.10 -2.39 -0.02 2.25 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.14 4.30 8.14 -2.39 -0.02 4.29 16 37 H 0.14 4.32 8.14 -2.39 -0.02 4.30 16 38 H 0.03 1.47 5.46 -2.39 -0.01 1.45 16 39 H 0.07 3.74 6.07 -2.39 -0.01 3.72 16 40 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.07 3.74 6.07 -2.39 -0.01 3.73 16 43 H 0.03 1.48 5.46 -2.39 -0.01 1.47 16 44 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 45 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.09 1.97 7.09 -2.39 -0.02 1.95 16 Total: -1.00 -69.48 366.54 0.98 -68.49 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.31 Total: 22.59 kcal Atomic # 6 Polarization: -50.64 SS G_CDS: 4.32 Total: -46.32 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -1.45 Total: -75.80 kcal Atomic # 8 Polarization: -98.75 SS G_CDS: -3.98 Total: -102.73 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.36 kcal Atomic # 16 Polarization: 90.65 SS G_CDS: -0.25 Total: 90.39 kcal Total: -69.48 0.98 -68.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263277328.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.109 kcal (2) G-P(sol) polarization free energy of solvation -69.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds