Wall clock time and date at job start Tue Mar 31 2020 17:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.50107 * 2 1 4 4 C 1.53036 * 109.49921 * 120.06878 * 2 1 3 5 5 C 1.53037 * 109.54096 * 58.64693 * 4 2 1 6 6 H 1.09000 * 109.49917 * 301.35073 * 5 4 2 7 7 C 1.50696 * 109.49746 * 181.28646 * 5 4 2 8 8 O 1.20824 * 120.00439 * 0.06800 * 7 5 4 9 9 O 1.34237 * 120.00052 * 179.79232 * 7 5 4 10 10 C 1.53189 * 109.33715 * 61.32308 * 5 4 2 11 11 N 1.46933 * 108.77401 * 305.37939 * 10 5 4 12 12 S 1.65597 * 120.62917 * 233.63177 * 11 10 5 13 13 O 1.42096 * 104.27690 * 206.06982 * 12 11 10 14 14 O 1.42098 * 104.28209 * 333.92720 * 12 11 10 15 15 C 1.81398 * 104.45004 * 89.99934 * 12 11 10 16 16 C 1.53001 * 109.47333 * 179.97438 * 15 12 11 17 17 C 1.53002 * 109.47350 * 300.00291 * 16 15 12 18 18 C 1.53007 * 109.46824 * 60.00063 * 16 15 12 19 19 C 1.50697 * 109.47405 * 179.97438 * 16 15 12 20 20 H 1.08008 * 120.00034 * 357.69657 * 19 16 15 21 21 C 1.37877 * 120.00447 * 177.70018 * 19 16 15 22 22 N 1.31520 * 119.99605 * 6.57758 * 21 19 16 23 23 Si 1.86795 * 120.00225 * 186.58490 * 21 19 16 24 24 H 1.48500 * 109.47508 * 84.99027 * 23 21 19 25 25 H 1.48501 * 109.46847 * 204.99426 * 23 21 19 26 26 H 1.48497 * 109.47046 * 324.98780 * 23 21 19 27 27 C 1.46919 * 118.73937 * 53.61151 * 11 10 5 28 28 H 1.09001 * 109.47074 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47441 * 300.06105 * 1 2 3 30 30 H 1.08999 * 109.47366 * 60.06373 * 1 2 3 31 31 H 1.09008 * 109.48450 * 298.61212 * 4 2 1 32 32 H 1.09005 * 109.43433 * 178.65885 * 4 2 1 33 33 H 0.96701 * 117.00166 * 180.27332 * 9 7 5 34 34 H 1.08995 * 109.59113 * 65.16521 * 10 5 4 35 35 H 1.08998 * 109.59074 * 185.59438 * 10 5 4 36 36 H 1.08999 * 109.47563 * 300.00078 * 15 12 11 37 37 H 1.09003 * 109.47067 * 59.99957 * 15 12 11 38 38 H 1.09003 * 109.46834 * 66.66824 * 17 16 15 39 39 H 1.09001 * 109.46901 * 186.66621 * 17 16 15 40 40 H 1.09001 * 109.46711 * 306.66795 * 17 16 15 41 41 H 1.09007 * 109.46965 * 60.00288 * 18 16 15 42 42 H 1.09004 * 109.46855 * 179.97438 * 18 16 15 43 43 H 1.08994 * 109.47302 * 300.00002 * 18 16 15 44 44 H 0.97000 * 119.99609 * 180.02562 * 22 21 19 45 45 H 1.08999 * 109.59227 * 66.17462 * 27 11 10 46 46 H 1.09003 * 109.59099 * 186.46718 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7228 1.2485 5 6 1.5043 -2.1559 1.2657 6 1 0.4145 -2.1366 1.2544 7 6 1.9820 -2.8569 2.5113 8 8 2.6791 -2.2704 3.3049 9 8 1.6285 -4.1312 2.7418 10 6 2.0153 -2.9038 0.0303 11 7 1.6522 -2.1379 -1.1699 12 16 0.8197 -2.8553 -2.4087 13 8 1.1795 -2.0994 -3.5568 14 8 1.1537 -4.2325 -2.3042 15 6 -0.9262 -2.5906 -1.9938 16 6 -1.8082 -3.2152 -3.0768 17 6 -1.4998 -2.5618 -4.4254 18 6 -1.5261 -4.7166 -3.1611 19 6 -3.2587 -2.9958 -2.7318 20 1 -3.5255 -2.4968 -1.8118 21 6 -4.2453 -3.4321 -3.5905 22 7 -3.9284 -4.1521 -4.6445 23 14 -6.0318 -3.0004 -3.2571 24 1 -6.3310 -1.6600 -3.8219 25 1 -6.9126 -4.0132 -3.8924 26 1 -6.2721 -2.9849 -1.7917 27 6 2.0413 -0.7235 -1.2499 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5147 0.8894 30 1 -0.3634 0.5128 -0.8905 31 1 1.6982 -0.1961 2.1392 32 1 3.1305 -0.7430 1.2354 33 1 1.9559 -4.5372 3.5561 34 1 3.0993 -3.0036 0.0859 35 1 1.5572 -3.8918 -0.0143 36 1 -1.1460 -3.0557 -1.0328 37 1 -1.1274 -1.5209 -1.9341 38 1 -0.4859 -2.8204 -4.7310 39 1 -2.2072 -2.9204 -5.1732 40 1 -1.5864 -1.4792 -4.3329 41 1 -1.7459 -5.1822 -2.2003 42 1 -2.1548 -5.1617 -3.9324 43 1 -0.4770 -4.8758 -3.4104 44 1 -4.6224 -4.4588 -5.2488 45 1 3.1274 -0.6454 -1.2985 46 1 1.6023 -0.2734 -2.1403 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263277330.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:37 Heat of formation + Delta-G solvation = -172.183896 kcal Electronic energy + Delta-G solvation = -29355.579089 eV Core-core repulsion = 25372.121579 eV Total energy + Delta-G solvation = -3983.457509 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.81790 -38.77834 -36.68164 -36.34376 -36.31311 -35.37348 -33.22860 -32.33873 -31.69168 -27.42118 -26.50396 -25.74909 -25.30378 -25.23172 -24.24906 -21.66617 -19.71015 -19.18050 -18.59625 -18.17774 -17.55846 -16.73393 -16.38226 -16.00169 -15.56962 -15.37187 -14.89567 -14.64771 -14.47520 -14.24638 -13.96183 -13.73711 -13.24065 -13.13633 -13.01784 -12.56386 -12.38331 -12.13563 -11.99689 -11.88271 -11.75963 -11.47291 -11.39288 -11.21174 -11.16440 -11.05931 -10.97728 -10.94403 -10.75267 -10.69011 -10.54658 -10.34773 -10.33500 -10.09693 -9.68776 -9.60371 -9.01742 -8.68645 -8.40113 -6.06290 -4.17772 0.74774 1.94866 2.73936 3.05335 3.24383 3.31747 3.32878 4.24794 4.29907 4.35766 4.48166 4.53231 4.64954 4.79648 4.91638 4.98672 5.14022 5.18243 5.18713 5.42655 5.51116 5.55992 5.60251 5.65915 5.69817 5.71782 5.82374 5.90502 5.95548 6.11900 6.17738 6.27940 6.36808 6.56979 6.65709 6.75655 6.87910 7.01117 7.28320 7.45664 7.65342 7.66177 7.94911 8.07164 8.30957 8.80465 9.47504 10.94827 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014868 B = 0.004154 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.797591 B = 6739.454754 C = 7109.858327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.106 4.106 3 H 0.089 0.911 4 C -0.094 4.094 5 C -0.103 4.103 6 H 0.120 0.880 7 C 0.488 3.512 8 O -0.516 6.516 9 O -0.511 6.511 10 C 0.134 3.866 11 N -1.005 6.005 12 S 2.590 3.410 13 O -0.959 6.959 14 O -0.960 6.960 15 C -0.584 4.584 16 C 0.083 3.917 17 C -0.160 4.160 18 C -0.164 4.164 19 C -0.501 4.501 20 H 0.059 0.941 21 C 0.065 3.935 22 N -0.882 5.882 23 Si 0.894 3.106 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.275 1.275 27 C 0.121 3.879 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.410 0.590 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.025 0.975 39 H 0.094 0.906 40 H 0.035 0.965 41 H 0.036 0.964 42 H 0.097 0.903 43 H 0.026 0.974 44 H 0.263 0.737 45 H 0.071 0.929 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.834 5.578 11.675 16.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.125 4.125 3 H 0.107 0.893 4 C -0.132 4.132 5 C -0.124 4.124 6 H 0.138 0.862 7 C 0.330 3.670 8 O -0.404 6.404 9 O -0.323 6.323 10 C 0.008 3.992 11 N -0.840 5.840 12 S 2.689 3.311 13 O -0.949 6.949 14 O -0.950 6.950 15 C -0.717 4.717 16 C 0.081 3.919 17 C -0.218 4.218 18 C -0.222 4.222 19 C -0.541 4.541 20 H 0.077 0.923 21 C -0.137 4.137 22 N -0.520 5.520 23 Si 0.722 3.278 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.200 1.200 27 C -0.004 4.004 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.269 0.731 34 H 0.093 0.907 35 H 0.124 0.876 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.044 0.956 39 H 0.112 0.888 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.116 0.884 43 H 0.044 0.956 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.259 5.382 10.616 16.384 hybrid contribution -1.310 0.240 1.317 1.873 sum 9.950 5.622 11.933 16.522 Atomic orbital electron populations 1.22097 0.94513 1.02881 1.02601 1.21538 0.96848 0.99674 0.94486 0.89271 1.21414 1.01356 0.91964 0.98465 1.21601 1.04151 0.96211 0.90409 0.86191 1.23373 0.76550 0.79637 0.87485 1.90711 1.35769 1.66377 1.47520 1.84593 1.71995 1.28125 1.47547 1.21211 1.01172 0.94741 0.82076 1.58076 1.72316 1.19771 1.33851 1.05885 0.77949 0.73966 0.73288 1.93543 1.82719 1.72297 1.46370 1.93542 1.83298 1.32495 1.85654 1.30671 1.20041 1.10254 1.10749 1.17929 0.94042 0.91794 0.88176 1.22208 0.99737 0.99043 1.00817 1.22315 0.99081 0.97977 1.02821 1.20910 0.88866 1.38257 1.06029 0.92295 1.24931 0.98966 0.94552 0.95228 1.69812 1.33085 1.34832 1.14257 0.86575 0.84567 0.78248 0.78385 1.20555 1.21208 1.20036 1.21503 1.00584 0.79804 0.98530 0.91769 0.92157 0.91741 0.90653 0.90725 0.73107 0.90699 0.87635 0.86433 0.86156 0.95594 0.88751 0.94597 0.94455 0.88404 0.95568 0.92705 0.91057 0.88547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 8.15 37.15 0.30 -1.30 16 2 C -0.11 -0.94 3.21 -90.50 -0.29 -1.23 16 3 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.09 -0.86 4.01 -26.69 -0.11 -0.97 16 5 C -0.10 -1.04 2.43 -91.66 -0.22 -1.26 16 6 H 0.12 1.14 6.34 -51.93 -0.33 0.81 16 7 C 0.49 5.09 7.63 36.00 0.27 5.36 16 8 O -0.52 -6.54 16.74 -18.75 -0.31 -6.85 16 9 O -0.51 -4.44 13.36 -39.28 -0.52 -4.97 16 10 C 0.13 1.55 5.53 -3.71 -0.02 1.53 16 11 N -1.01 -13.29 2.66 -113.52 -0.30 -13.59 16 12 S 2.59 46.40 4.44 -107.50 -0.48 45.92 16 13 O -0.96 -19.36 14.48 -57.54 -0.83 -20.19 16 14 O -0.96 -19.51 14.35 -57.54 -0.83 -20.33 16 15 C -0.58 -10.80 4.09 37.16 0.15 -10.65 16 16 C 0.08 1.94 0.52 -155.66 -0.08 1.86 16 17 C -0.16 -3.83 7.58 37.16 0.28 -3.55 16 18 C -0.16 -3.96 7.79 37.16 0.29 -3.67 16 19 C -0.50 -12.74 8.01 -34.44 -0.28 -13.01 16 20 H 0.06 1.45 7.75 -52.48 -0.41 1.05 16 21 C 0.07 1.69 5.09 -17.82 -0.09 1.60 16 22 N -0.88 -23.62 9.39 55.43 0.52 -23.10 16 23 Si 0.89 20.22 29.54 -169.99 -5.02 15.20 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 25 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 C 0.12 1.33 5.71 -3.71 -0.02 1.31 16 28 H 0.06 0.68 4.39 -51.93 -0.23 0.45 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.68 8.07 -51.92 -0.42 0.26 16 32 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 33 H 0.41 1.77 9.10 45.56 0.41 2.18 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.11 1.29 7.10 -51.93 -0.37 0.92 16 36 H 0.12 1.96 8.14 -51.92 -0.42 1.53 16 37 H 0.12 2.00 7.09 -51.92 -0.37 1.63 16 38 H 0.03 0.59 5.96 -51.93 -0.31 0.28 16 39 H 0.09 2.45 5.99 -51.93 -0.31 2.14 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.04 0.85 8.14 -51.92 -0.42 0.43 16 42 H 0.10 2.56 6.01 -51.93 -0.31 2.25 16 43 H 0.03 0.60 5.46 -51.93 -0.28 0.32 16 44 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.10 1.11 7.10 -51.93 -0.37 0.74 16 LS Contribution 357.96 15.07 5.39 5.39 Total: -1.00 -32.62 357.96 -8.42 -41.04 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.23 Total: 5.46 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 0.19 Total: -23.98 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.22 Total: -36.69 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -2.50 Total: -52.34 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 46.40 SS G_CDS: -0.48 Total: 45.92 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.62 -8.42 -41.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263277330.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.147 kcal (2) G-P(sol) polarization free energy of solvation -32.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds