Wall clock time and date at job start Tue Mar 31 2020 17:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.50107 * 2 1 4 4 C 1.53036 * 109.49921 * 120.06878 * 2 1 3 5 5 C 1.53037 * 109.54096 * 58.64693 * 4 2 1 6 6 H 1.09000 * 109.49917 * 301.35073 * 5 4 2 7 7 C 1.50696 * 109.49746 * 181.28646 * 5 4 2 8 8 O 1.20824 * 120.00439 * 0.06800 * 7 5 4 9 9 O 1.34237 * 120.00052 * 179.79232 * 7 5 4 10 10 C 1.53189 * 109.33715 * 61.32308 * 5 4 2 11 11 N 1.46933 * 108.77401 * 305.37939 * 10 5 4 12 12 S 1.65597 * 120.62917 * 233.63177 * 11 10 5 13 13 O 1.42096 * 104.27690 * 206.06982 * 12 11 10 14 14 O 1.42098 * 104.28209 * 333.92720 * 12 11 10 15 15 C 1.81398 * 104.45004 * 89.99934 * 12 11 10 16 16 C 1.53001 * 109.47333 * 179.97438 * 15 12 11 17 17 C 1.53002 * 109.47350 * 300.00291 * 16 15 12 18 18 C 1.53007 * 109.46824 * 60.00063 * 16 15 12 19 19 C 1.50697 * 109.47405 * 179.97438 * 16 15 12 20 20 H 1.08008 * 120.00034 * 357.69657 * 19 16 15 21 21 C 1.37877 * 120.00447 * 177.70018 * 19 16 15 22 22 N 1.31520 * 119.99605 * 6.57758 * 21 19 16 23 23 Si 1.86795 * 120.00225 * 186.58490 * 21 19 16 24 24 H 1.48500 * 109.47508 * 84.99027 * 23 21 19 25 25 H 1.48501 * 109.46847 * 204.99426 * 23 21 19 26 26 H 1.48497 * 109.47046 * 324.98780 * 23 21 19 27 27 C 1.46919 * 118.73937 * 53.61151 * 11 10 5 28 28 H 1.09001 * 109.47074 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47441 * 300.06105 * 1 2 3 30 30 H 1.08999 * 109.47366 * 60.06373 * 1 2 3 31 31 H 1.09008 * 109.48450 * 298.61212 * 4 2 1 32 32 H 1.09005 * 109.43433 * 178.65885 * 4 2 1 33 33 H 0.96701 * 117.00166 * 180.27332 * 9 7 5 34 34 H 1.08995 * 109.59113 * 65.16521 * 10 5 4 35 35 H 1.08998 * 109.59074 * 185.59438 * 10 5 4 36 36 H 1.08999 * 109.47563 * 300.00078 * 15 12 11 37 37 H 1.09003 * 109.47067 * 59.99957 * 15 12 11 38 38 H 1.09003 * 109.46834 * 66.66824 * 17 16 15 39 39 H 1.09001 * 109.46901 * 186.66621 * 17 16 15 40 40 H 1.09001 * 109.46711 * 306.66795 * 17 16 15 41 41 H 1.09007 * 109.46965 * 60.00288 * 18 16 15 42 42 H 1.09004 * 109.46855 * 179.97438 * 18 16 15 43 43 H 1.08994 * 109.47302 * 300.00002 * 18 16 15 44 44 H 0.97000 * 119.99609 * 180.02562 * 22 21 19 45 45 H 1.08999 * 109.59227 * 66.17462 * 27 11 10 46 46 H 1.09003 * 109.59099 * 186.46718 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7228 1.2485 5 6 1.5043 -2.1559 1.2657 6 1 0.4145 -2.1366 1.2544 7 6 1.9820 -2.8569 2.5113 8 8 2.6791 -2.2704 3.3049 9 8 1.6285 -4.1312 2.7418 10 6 2.0153 -2.9038 0.0303 11 7 1.6522 -2.1379 -1.1699 12 16 0.8197 -2.8553 -2.4087 13 8 1.1795 -2.0994 -3.5568 14 8 1.1537 -4.2325 -2.3042 15 6 -0.9262 -2.5906 -1.9938 16 6 -1.8082 -3.2152 -3.0768 17 6 -1.4998 -2.5618 -4.4254 18 6 -1.5261 -4.7166 -3.1611 19 6 -3.2587 -2.9958 -2.7318 20 1 -3.5255 -2.4968 -1.8118 21 6 -4.2453 -3.4321 -3.5905 22 7 -3.9284 -4.1521 -4.6445 23 14 -6.0318 -3.0004 -3.2571 24 1 -6.3310 -1.6600 -3.8219 25 1 -6.9126 -4.0132 -3.8924 26 1 -6.2721 -2.9849 -1.7917 27 6 2.0413 -0.7235 -1.2499 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5147 0.8894 30 1 -0.3634 0.5128 -0.8905 31 1 1.6982 -0.1961 2.1392 32 1 3.1305 -0.7430 1.2354 33 1 1.9559 -4.5372 3.5561 34 1 3.0993 -3.0036 0.0859 35 1 1.5572 -3.8918 -0.0143 36 1 -1.1460 -3.0557 -1.0328 37 1 -1.1274 -1.5209 -1.9341 38 1 -0.4859 -2.8204 -4.7310 39 1 -2.2072 -2.9204 -5.1732 40 1 -1.5864 -1.4792 -4.3329 41 1 -1.7459 -5.1822 -2.2003 42 1 -2.1548 -5.1617 -3.9324 43 1 -0.4770 -4.8758 -3.4104 44 1 -4.6224 -4.4588 -5.2488 45 1 3.1274 -0.6454 -1.2985 46 1 1.6023 -0.2734 -2.1403 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263277330.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:36 Heat of formation + Delta-G solvation = -194.119531 kcal Electronic energy + Delta-G solvation = -29356.530289 eV Core-core repulsion = 25372.121579 eV Total energy + Delta-G solvation = -3984.408710 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.61815 -39.61547 -38.18584 -38.11548 -37.11811 -36.89999 -34.16192 -33.58615 -33.17820 -28.63941 -27.69690 -27.65548 -27.22028 -26.09193 -25.20805 -22.44154 -21.32069 -20.39118 -19.54928 -19.02926 -18.86662 -17.94972 -17.51989 -17.37024 -16.89995 -16.69317 -16.60974 -15.62856 -15.49350 -15.06367 -15.02466 -14.76478 -14.65737 -14.56064 -14.41041 -14.01323 -13.74271 -13.45566 -13.23741 -13.09136 -12.93380 -12.86000 -12.75258 -12.60897 -12.52464 -12.43750 -12.22546 -12.17432 -12.15097 -11.99005 -11.88549 -11.72947 -11.55178 -11.51658 -11.35191 -11.23741 -10.62932 -10.36863 -9.94279 -8.01240 -6.18742 -0.65703 1.14209 1.45863 1.47998 1.55291 1.72936 2.15271 2.46121 2.90324 3.19129 3.22971 3.50096 3.66336 3.77458 3.97018 4.00212 4.15140 4.18130 4.22270 4.35168 4.47396 4.60321 4.66623 4.72500 4.80145 4.86611 4.87778 4.89888 4.95683 4.99180 5.02614 5.09542 5.16825 5.25981 5.29395 5.39834 5.46733 5.50976 5.61745 5.64852 5.67426 5.99145 6.13845 6.36934 6.85840 6.99946 7.49237 8.98454 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014868 B = 0.004154 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.797591 B = 6739.454754 C = 7109.858327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.096 4.096 3 H 0.114 0.886 4 C -0.090 4.090 5 C -0.102 4.102 6 H 0.126 0.874 7 C 0.495 3.505 8 O -0.540 6.540 9 O -0.513 6.513 10 C 0.129 3.871 11 N -0.995 5.995 12 S 2.605 3.395 13 O -0.985 6.985 14 O -0.988 6.988 15 C -0.585 4.585 16 C 0.071 3.929 17 C -0.156 4.156 18 C -0.160 4.160 19 C -0.513 4.513 20 H 0.065 0.935 21 C 0.019 3.981 22 N -0.907 5.907 23 Si 0.951 3.049 24 H -0.277 1.277 25 H -0.290 1.290 26 H -0.268 1.268 27 C 0.111 3.889 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.429 0.571 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.026 0.974 39 H 0.069 0.931 40 H 0.043 0.957 41 H 0.040 0.960 42 H 0.072 0.928 43 H 0.029 0.971 44 H 0.261 0.739 45 H 0.089 0.911 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.244 6.947 13.613 18.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.115 4.115 3 H 0.132 0.868 4 C -0.128 4.128 5 C -0.123 4.123 6 H 0.144 0.856 7 C 0.338 3.662 8 O -0.430 6.430 9 O -0.326 6.326 10 C 0.003 3.997 11 N -0.833 5.833 12 S 2.704 3.296 13 O -0.975 6.975 14 O -0.978 6.978 15 C -0.718 4.718 16 C 0.069 3.931 17 C -0.214 4.214 18 C -0.218 4.218 19 C -0.552 4.552 20 H 0.083 0.917 21 C -0.180 4.180 22 N -0.546 5.546 23 Si 0.777 3.223 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.192 1.192 27 C -0.014 4.014 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.291 0.709 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.045 0.955 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.091 0.909 43 H 0.048 0.952 44 H 0.070 0.930 45 H 0.107 0.893 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.659 6.736 12.565 18.417 hybrid contribution -1.375 -0.213 0.759 1.585 sum 10.283 6.523 13.323 18.050 Atomic orbital electron populations 1.22162 0.95136 1.02355 1.03132 1.21507 0.96246 1.00614 0.93168 0.86812 1.21403 1.01481 0.91245 0.98670 1.21603 1.04566 0.96634 0.89456 0.85591 1.23334 0.75874 0.79857 0.87176 1.90708 1.36896 1.66999 1.48376 1.84559 1.71794 1.27428 1.48849 1.21365 1.02041 0.94404 0.81852 1.57661 1.71243 1.20916 1.33434 1.05088 0.77675 0.73243 0.73556 1.93504 1.82949 1.72655 1.48395 1.93499 1.83539 1.34444 1.86306 1.30590 1.20146 1.11229 1.09804 1.17910 0.94462 0.91410 0.89336 1.22135 0.98990 0.99483 1.00789 1.22244 0.98682 0.98858 1.02023 1.21259 0.90050 1.37779 1.06090 0.91723 1.25645 1.02525 0.94635 0.95244 1.69957 1.33890 1.35722 1.15024 0.85678 0.80374 0.77756 0.78448 1.20271 1.21584 1.19226 1.21817 1.01799 0.78281 0.99486 0.92812 0.90823 0.92115 0.90075 0.90470 0.70938 0.89328 0.88472 0.84642 0.84290 0.95503 0.91251 0.93772 0.94129 0.90941 0.95241 0.92994 0.89268 0.89182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 8.15 71.98 0.59 -2.29 16 2 C -0.10 -1.41 3.21 -10.72 -0.03 -1.45 16 3 H 0.11 1.19 8.14 -2.39 -0.02 1.18 16 4 C -0.09 -1.38 4.01 30.62 0.12 -1.26 16 5 C -0.10 -1.80 2.43 -11.47 -0.03 -1.83 16 6 H 0.13 2.09 6.34 -2.39 -0.02 2.07 16 7 C 0.49 9.24 7.63 71.23 0.54 9.78 16 8 O -0.54 -12.56 16.74 21.97 0.37 -12.19 16 9 O -0.51 -7.83 13.36 -51.48 -0.69 -8.52 16 10 C 0.13 2.73 5.53 86.36 0.48 3.21 16 11 N -1.00 -24.49 2.66 -513.06 -1.36 -25.86 16 12 S 2.61 91.19 4.44 -56.49 -0.25 90.94 16 13 O -0.98 -39.26 14.48 -127.65 -1.85 -41.11 16 14 O -0.99 -39.82 14.35 -127.65 -1.83 -41.65 16 15 C -0.59 -20.97 4.09 71.98 0.29 -20.68 16 16 C 0.07 3.31 0.52 -52.93 -0.03 3.28 16 17 C -0.16 -7.54 7.58 71.98 0.55 -7.00 16 18 C -0.16 -7.83 7.79 71.98 0.56 -7.27 16 19 C -0.51 -25.79 8.01 25.60 0.20 -25.58 16 20 H 0.06 3.10 7.75 -2.91 -0.02 3.08 16 21 C 0.02 0.98 5.09 84.65 0.43 1.41 16 22 N -0.91 -49.48 9.39 21.45 0.20 -49.27 16 23 Si 0.95 41.24 29.54 68.60 2.03 43.27 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 25 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 26 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 27 C 0.11 2.15 5.71 86.37 0.49 2.65 16 28 H 0.05 1.01 4.39 -2.39 -0.01 1.00 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.19 8.07 -2.38 -0.02 1.18 16 32 H 0.08 1.17 8.13 -2.38 -0.02 1.15 16 33 H 0.43 2.79 9.10 -74.06 -0.67 2.11 16 34 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.10 2.24 7.10 -2.39 -0.02 2.23 16 36 H 0.14 4.29 8.14 -2.39 -0.02 4.28 16 37 H 0.14 4.39 7.09 -2.39 -0.02 4.37 16 38 H 0.03 1.24 5.96 -2.39 -0.01 1.23 16 39 H 0.07 3.69 5.99 -2.39 -0.01 3.67 16 40 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 42 H 0.07 3.90 6.01 -2.38 -0.01 3.88 16 43 H 0.03 1.38 5.46 -2.39 -0.01 1.36 16 44 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 45 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.09 1.91 7.10 -2.39 -0.02 1.89 16 Total: -1.00 -69.51 357.96 1.11 -68.40 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.33 Total: 23.03 kcal Atomic # 6 Polarization: -51.19 SS G_CDS: 4.17 Total: -47.02 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -1.16 Total: -75.13 kcal Atomic # 8 Polarization: -99.48 SS G_CDS: -4.00 Total: -103.48 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Atomic # 16 Polarization: 91.19 SS G_CDS: -0.25 Total: 90.94 kcal Total: -69.51 1.11 -68.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263277330.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.724 kcal (2) G-P(sol) polarization free energy of solvation -69.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds