Wall clock time and date at job start Tue Mar 31 2020 17:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.69740 * 2 1 4 4 C 1.52755 * 109.51078 * 239.88543 * 2 1 3 5 5 C 1.53043 * 109.38258 * 185.70429 * 4 2 1 6 6 C 1.53040 * 109.54164 * 61.23879 * 5 4 2 7 7 H 1.09007 * 109.52200 * 58.60091 * 6 5 4 8 8 C 1.50700 * 109.50245 * 178.68359 * 6 5 4 9 9 O 1.20825 * 119.99747 * 119.83395 * 8 6 5 10 10 O 1.34227 * 119.99541 * 299.84138 * 8 6 5 11 11 C 1.53191 * 109.31129 * 298.63980 * 6 5 4 12 12 N 1.46922 * 109.58880 * 120.35412 * 2 1 3 13 13 S 1.65606 * 120.62950 * 353.42104 * 12 2 1 14 14 O 1.42106 * 104.27447 * 164.68845 * 13 12 2 15 15 O 1.42102 * 104.27473 * 36.83421 * 13 12 2 16 16 C 1.81400 * 104.45071 * 280.76143 * 13 12 2 17 17 C 1.52999 * 109.47123 * 179.97438 * 16 13 12 18 18 C 1.53002 * 109.46818 * 59.99966 * 17 16 13 19 19 C 1.53000 * 109.46962 * 299.99995 * 17 16 13 20 20 C 1.50696 * 109.46973 * 180.02562 * 17 16 13 21 21 H 1.08001 * 120.00476 * 4.82680 * 20 17 16 22 22 C 1.37881 * 120.00037 * 184.83152 * 20 17 16 23 23 N 1.31518 * 119.99875 * 353.22261 * 22 20 17 24 24 Si 1.86793 * 120.00306 * 173.22660 * 22 20 17 25 25 H 1.48500 * 109.47208 * 59.99687 * 24 22 20 26 26 H 1.48503 * 109.47338 * 299.99815 * 24 22 20 27 27 H 1.48501 * 109.47377 * 179.97438 * 24 22 20 28 28 H 1.08995 * 109.47072 * 292.41173 * 1 2 3 29 29 H 1.09000 * 109.47484 * 52.41551 * 1 2 3 30 30 H 1.09003 * 109.47104 * 172.41667 * 1 2 3 31 31 H 1.09000 * 109.56605 * 65.66787 * 4 2 1 32 32 H 1.09003 * 109.36225 * 305.61258 * 4 2 1 33 33 H 1.09000 * 109.46176 * 301.21813 * 5 4 2 34 34 H 1.09006 * 109.46052 * 181.25958 * 5 4 2 35 35 H 0.96702 * 116.99725 * 180.02562 * 10 8 6 36 36 H 1.09003 * 109.58447 * 294.84258 * 11 6 5 37 37 H 1.09000 * 109.70887 * 174.49133 * 11 6 5 38 38 H 1.08998 * 109.47063 * 60.00084 * 16 13 12 39 39 H 1.09001 * 109.46810 * 300.00215 * 16 13 12 40 40 H 1.09008 * 109.46631 * 171.74963 * 18 17 16 41 41 H 1.08999 * 109.47263 * 291.74985 * 18 17 16 42 42 H 1.08994 * 109.47360 * 51.75660 * 18 17 16 43 43 H 1.08991 * 109.47243 * 308.38062 * 19 17 16 44 44 H 1.09006 * 109.47203 * 68.38365 * 19 17 16 45 45 H 1.09008 * 109.46892 * 188.37846 * 19 17 16 46 46 H 0.97003 * 119.99806 * 5.28809 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0402 -0.7224 -1.2455 5 6 3.5639 -0.8460 -1.1726 6 6 3.9524 -1.6685 0.0581 7 1 3.4911 -2.6543 -0.0020 8 6 5.4512 -1.8170 0.1113 9 8 6.0668 -1.3936 1.0608 10 8 6.1020 -2.4195 -0.8962 11 6 3.4645 -0.9518 1.3211 12 7 2.0226 -0.6995 1.1944 13 16 0.9718 -1.2001 2.3724 14 8 1.7268 -2.1221 3.1467 15 8 -0.1832 -1.6173 1.6574 16 6 0.6198 0.2986 3.3318 17 6 -0.3527 -0.0373 4.4642 18 6 0.2736 -1.0926 5.3780 19 6 -1.6547 -0.5822 3.8734 20 6 -0.6456 1.2079 5.2608 21 1 -0.2470 2.1595 4.9414 22 6 -1.4224 1.1324 6.3974 23 7 -2.0172 0.0027 6.7135 24 14 -1.6302 2.6344 7.4883 25 1 -2.2476 3.7340 6.7042 26 1 -0.3019 3.0695 7.9899 27 1 -2.5066 2.2940 8.6377 28 1 -0.3633 0.3918 0.9500 29 1 -0.3634 0.6268 -0.8144 30 1 -0.3633 -1.0187 -0.1356 31 1 1.7632 -0.1564 -2.1349 32 1 1.5964 -1.7169 -1.2937 33 1 4.0058 0.1477 -1.0995 34 1 3.9314 -1.3415 -2.0713 35 1 7.0630 -2.4916 -0.8171 36 1 3.9928 -0.0048 1.4310 37 1 3.6507 -1.5776 2.1939 38 1 0.1732 1.0502 2.6809 39 1 1.5474 0.6870 3.7523 40 1 -0.3513 -1.2253 6.2613 41 1 0.3502 -2.0384 4.8417 42 1 1.2679 -0.7658 5.6823 43 1 -2.0232 0.1044 3.1114 44 1 -1.4695 -1.5580 3.4242 45 1 -2.3988 -0.6814 4.6638 46 1 -1.8486 -0.7969 6.1910 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263292547.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:36 Heat of formation + Delta-G solvation = -154.186988 kcal Electronic energy + Delta-G solvation = -29174.380689 eV Core-core repulsion = 25191.703585 eV Total energy + Delta-G solvation = -3982.677105 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.80128 -38.72537 -36.98385 -36.81707 -36.38622 -35.45607 -33.36417 -32.31196 -31.55882 -27.92239 -26.88317 -26.07733 -24.97953 -24.77555 -23.39761 -21.74488 -20.54064 -19.54272 -18.62490 -18.20420 -17.50787 -16.93675 -16.42151 -16.15257 -16.02445 -15.49973 -14.98316 -14.71890 -14.06732 -13.95665 -13.79078 -13.69565 -13.40196 -13.28237 -12.96250 -12.80782 -12.71833 -12.39895 -12.03827 -11.86719 -11.81881 -11.54192 -11.51391 -11.32039 -11.20494 -11.10313 -10.96342 -10.91239 -10.64644 -10.62511 -10.54794 -10.28711 -10.12073 -10.06026 -9.93488 -9.89327 -9.04796 -8.48454 -8.25740 -6.30291 -4.16748 0.68400 1.92187 2.63257 3.02388 3.39558 3.41374 3.60008 4.18404 4.24638 4.41450 4.46864 4.52401 4.56103 4.71756 4.89319 4.99441 5.13086 5.17701 5.26141 5.37448 5.44282 5.48503 5.53075 5.62176 5.66255 5.70940 5.72379 5.88223 6.00519 6.08089 6.17067 6.19559 6.40678 6.47712 6.55776 6.60716 6.61033 6.74176 7.02048 7.04176 7.44964 7.54811 7.59983 8.08273 8.31699 8.77113 9.54093 10.94775 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020412 B = 0.003597 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.387578 B = 7781.865572 C = 8222.412002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.148 3.852 3 H 0.075 0.925 4 C -0.126 4.126 5 C -0.108 4.108 6 C -0.094 4.094 7 H 0.115 0.885 8 C 0.487 3.513 9 O -0.510 6.510 10 O -0.516 6.516 11 C 0.131 3.869 12 N -1.004 6.004 13 S 2.590 3.410 14 O -0.965 6.965 15 O -0.956 6.956 16 C -0.575 4.575 17 C 0.067 3.933 18 C -0.177 4.177 19 C -0.171 4.171 20 C -0.582 4.582 21 H 0.053 0.947 22 C 0.024 3.976 23 N -0.913 5.913 24 Si 1.066 2.934 25 H -0.288 1.288 26 H -0.287 1.287 27 H -0.281 1.281 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.410 0.590 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.085 0.915 41 H 0.032 0.968 42 H 0.047 0.953 43 H 0.046 0.954 44 H 0.032 0.968 45 H 0.080 0.920 46 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.541 -1.272 -17.842 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.043 3.957 3 H 0.093 0.907 4 C -0.165 4.165 5 C -0.146 4.146 6 C -0.114 4.114 7 H 0.133 0.867 8 C 0.329 3.671 9 O -0.397 6.397 10 O -0.327 6.327 11 C 0.005 3.995 12 N -0.840 5.840 13 S 2.691 3.309 14 O -0.955 6.955 15 O -0.946 6.946 16 C -0.709 4.709 17 C 0.065 3.935 18 C -0.235 4.235 19 C -0.229 4.229 20 C -0.621 4.621 21 H 0.072 0.928 22 C -0.180 4.180 23 N -0.553 5.553 24 Si 0.895 3.105 25 H -0.215 1.215 26 H -0.214 1.214 27 H -0.207 1.207 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.124 0.876 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.269 0.731 36 H 0.096 0.904 37 H 0.126 0.874 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.103 0.897 41 H 0.051 0.949 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.051 0.949 45 H 0.098 0.902 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.189 -1.482 -16.175 19.174 hybrid contribution 1.744 0.172 -1.235 2.144 sum 11.933 -1.309 -17.411 21.148 Atomic orbital electron populations 1.22779 0.92531 1.06172 1.02967 1.20961 0.94894 0.95534 0.84345 0.90742 1.21884 0.94473 1.02251 0.97855 1.21500 0.97068 1.00029 0.95962 1.21409 0.87290 1.03495 0.99246 0.86688 1.23343 0.91270 0.73387 0.79143 1.90754 1.69338 1.45845 1.33773 1.84529 1.27721 1.73215 1.47282 1.21210 0.80234 1.01150 0.96862 1.58084 1.17257 1.74393 1.34306 1.05820 0.73503 0.77928 0.73678 1.93519 1.71027 1.60298 1.70664 1.93601 1.49603 1.81422 1.69976 1.30533 1.09916 1.18266 1.12151 1.18076 0.89170 0.96727 0.89535 1.22466 1.01252 0.96773 1.02997 1.22449 1.01113 0.98244 1.01112 1.21708 1.36582 0.92686 1.11103 0.92834 1.25754 0.92651 1.03019 0.96587 1.70865 1.39112 1.01541 1.43801 0.83583 0.76432 0.74244 0.76281 1.21474 1.21399 1.20673 0.91927 0.91350 0.87589 0.89999 0.90645 0.91054 0.90181 0.73148 0.90361 0.87395 0.86199 0.86201 0.89673 0.94864 0.93411 0.93486 0.94887 0.90166 0.90149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.33 7.57 37.16 0.28 -2.05 16 2 C 0.15 1.66 3.49 -67.83 -0.24 1.42 16 3 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.13 -1.10 5.34 -26.83 -0.14 -1.24 16 5 C -0.11 -0.88 5.11 -26.69 -0.14 -1.02 16 6 C -0.09 -0.97 2.78 -91.65 -0.25 -1.22 16 7 H 0.12 1.15 8.14 -51.92 -0.42 0.73 16 8 C 0.49 5.08 7.63 36.01 0.27 5.36 16 9 O -0.51 -6.91 16.68 -18.75 -0.31 -7.22 16 10 O -0.52 -3.84 13.31 -39.25 -0.52 -4.36 16 11 C 0.13 1.68 5.11 -3.71 -0.02 1.67 16 12 N -1.00 -13.80 3.22 -106.71 -0.34 -14.14 16 13 S 2.59 46.68 3.88 -107.50 -0.42 46.26 16 14 O -0.96 -19.86 14.13 -57.54 -0.81 -20.67 16 15 O -0.96 -18.22 11.23 -57.54 -0.65 -18.87 16 16 C -0.58 -11.22 4.86 37.16 0.18 -11.04 16 17 C 0.07 1.62 0.52 -155.66 -0.08 1.54 16 18 C -0.18 -4.31 7.33 37.16 0.27 -4.04 16 19 C -0.17 -4.06 7.39 37.16 0.27 -3.79 16 20 C -0.58 -15.48 8.01 -34.44 -0.28 -15.76 16 21 H 0.05 1.40 7.76 -52.49 -0.41 0.99 16 22 C 0.02 0.67 5.07 -17.82 -0.09 0.58 16 23 N -0.91 -26.23 12.13 55.43 0.67 -25.55 16 24 Si 1.07 24.30 29.91 -169.99 -5.08 19.21 16 25 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H 0.06 0.89 5.02 -51.93 -0.26 0.63 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.11 1.49 6.24 -51.93 -0.32 1.16 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 35 H 0.41 1.36 9.10 45.56 0.41 1.77 16 36 H 0.08 0.92 7.96 -51.93 -0.41 0.51 16 37 H 0.11 1.57 6.62 -51.93 -0.34 1.23 16 38 H 0.12 2.12 6.72 -51.93 -0.35 1.77 16 39 H 0.12 2.20 8.14 -51.92 -0.42 1.78 16 40 H 0.08 2.22 5.07 -51.92 -0.26 1.96 16 41 H 0.03 0.76 6.02 -51.93 -0.31 0.45 16 42 H 0.05 1.11 8.13 -51.93 -0.42 0.69 16 43 H 0.05 1.05 8.13 -51.93 -0.42 0.62 16 44 H 0.03 0.73 6.03 -51.93 -0.31 0.42 16 45 H 0.08 2.06 5.40 -51.92 -0.28 1.78 16 46 H 0.28 7.94 3.62 -40.82 -0.15 7.79 16 LS Contribution 352.88 15.07 5.32 5.32 Total: -1.00 -33.88 352.88 -8.12 -42.00 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.02 Total: 7.62 kcal Atomic # 6 Polarization: -29.64 SS G_CDS: 0.05 Total: -29.59 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.33 Total: -39.70 kcal Atomic # 8 Polarization: -48.83 SS G_CDS: -2.29 Total: -51.12 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.08 Total: 19.21 kcal Atomic # 16 Polarization: 46.68 SS G_CDS: -0.42 Total: 46.26 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.88 -8.12 -42.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263292547.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.189 kcal (2) G-P(sol) polarization free energy of solvation -33.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds