Wall clock time and date at job start Tue Mar 31 2020 17:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.58766 * 2 1 4 4 C 1.53196 * 109.58384 * 239.56895 * 2 1 3 5 5 H 1.09004 * 109.49618 * 174.86599 * 4 2 1 6 6 C 1.50701 * 109.49713 * 54.80165 * 4 2 1 7 7 O 1.20832 * 119.99824 * 18.73622 * 6 4 2 8 8 O 1.34226 * 120.00161 * 198.73265 * 6 4 2 9 9 C 1.53038 * 109.31132 * 294.84910 * 4 2 1 10 10 C 1.53040 * 109.54174 * 298.63314 * 9 4 2 11 11 C 1.52758 * 109.37981 * 61.24173 * 10 9 4 12 12 N 1.46924 * 109.01167 * 305.58906 * 11 10 9 13 13 S 1.65606 * 120.63070 * 233.58658 * 12 11 10 14 14 O 1.42097 * 104.27457 * 153.64762 * 13 12 11 15 15 O 1.42092 * 104.27467 * 25.79060 * 13 12 11 16 16 C 1.81399 * 104.44737 * 269.71589 * 13 12 11 17 17 C 1.52995 * 109.47134 * 180.02562 * 16 13 12 18 18 C 1.52999 * 109.47468 * 60.00006 * 17 16 13 19 19 C 1.53006 * 109.47288 * 300.00407 * 17 16 13 20 20 C 1.50694 * 109.47518 * 180.02562 * 17 16 13 21 21 H 1.08005 * 120.00096 * 359.72044 * 20 17 16 22 22 C 1.37882 * 120.00435 * 179.97438 * 20 17 16 23 23 N 1.31506 * 119.99806 * 359.97438 * 22 20 17 24 24 Si 1.86799 * 119.99951 * 179.97438 * 22 20 17 25 25 H 1.48495 * 109.47093 * 60.00273 * 24 22 20 26 26 H 1.48501 * 109.46847 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47225 * 299.99973 * 24 22 20 28 28 H 1.09001 * 109.47008 * 294.31214 * 1 2 3 29 29 H 1.08996 * 109.47194 * 54.30811 * 1 2 3 30 30 H 1.08998 * 109.47292 * 174.31355 * 1 2 3 31 31 H 0.96700 * 117.00105 * 180.02562 * 8 6 4 32 32 H 1.09000 * 109.46189 * 58.65865 * 9 4 2 33 33 H 1.09007 * 109.45676 * 178.62519 * 9 4 2 34 34 H 1.08995 * 109.49948 * 181.31788 * 10 9 4 35 35 H 1.09001 * 109.49508 * 301.38946 * 10 9 4 36 36 H 1.08998 * 109.50700 * 185.70585 * 11 10 9 37 37 H 1.08998 * 109.43315 * 65.42728 * 11 10 9 38 38 H 1.08999 * 109.46996 * 60.00232 * 16 13 12 39 39 H 1.08999 * 109.47287 * 300.00033 * 16 13 12 40 40 H 1.08995 * 109.47883 * 179.97438 * 18 17 16 41 41 H 1.09006 * 109.46797 * 300.00788 * 18 17 16 42 42 H 1.09004 * 109.46502 * 59.99828 * 18 17 16 43 43 H 1.09004 * 109.46520 * 300.00091 * 19 17 16 44 44 H 1.08997 * 109.46877 * 59.99398 * 19 17 16 45 45 H 1.08995 * 109.47368 * 180.02562 * 19 17 16 46 46 H 0.97000 * 120.00535 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7311 -1.2445 5 1 3.1297 -0.6516 -1.2908 6 6 1.4406 -0.1092 -2.4777 7 8 0.9650 1.0003 -2.4240 8 8 1.4321 -0.7876 -3.6359 9 6 1.6413 -2.2056 -1.1672 10 6 2.2799 -2.8464 0.0672 11 6 1.7740 -2.1404 1.3238 12 7 2.0225 -0.6981 1.1954 13 16 2.8482 0.1239 2.3723 14 8 3.4276 1.2266 1.6887 15 8 3.6611 -0.8664 2.9867 16 6 1.5601 0.6903 3.5172 17 6 2.2044 1.4734 4.6627 18 6 2.9516 2.6828 4.0970 19 6 3.1882 0.5695 5.4085 20 6 1.1345 1.9434 5.6142 21 1 0.0980 1.7111 5.4187 22 6 1.4782 2.6746 6.7315 23 7 2.7398 2.9614 6.9672 24 14 0.1518 3.2578 7.9104 25 1 -0.5737 2.0840 8.4591 26 1 0.7773 4.0178 9.0224 27 1 -0.8025 4.1357 7.1868 28 1 -0.3633 0.4231 0.9365 29 1 -0.3633 0.5995 -0.8346 30 1 -0.3634 -1.0226 -0.1018 31 1 1.0348 -0.3474 -4.3997 32 1 0.5564 -2.2829 -1.0963 33 1 1.9844 -2.7230 -2.0633 34 1 2.0121 -3.9021 0.1087 35 1 3.3639 -2.7479 0.0085 36 1 2.3024 -2.5261 2.1956 37 1 0.7043 -2.3185 1.4340 38 1 1.0276 -0.1712 3.9199 39 1 0.8596 1.3347 2.9860 40 1 3.4103 3.2410 4.9131 41 1 3.7255 2.3424 3.4090 42 1 2.2507 3.3268 3.5657 43 1 2.6559 -0.2921 5.8116 44 1 3.9621 0.2292 4.7206 45 1 3.6469 1.1272 6.2249 46 1 2.9817 3.4754 7.7534 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263295184.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:20 Heat of formation + Delta-G solvation = -168.426399 kcal Electronic energy + Delta-G solvation = -29143.931162 eV Core-core repulsion = 25160.636590 eV Total energy + Delta-G solvation = -3983.294572 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.94366 -38.62669 -36.67752 -36.36458 -36.27283 -35.32261 -32.84540 -32.36961 -31.66207 -28.14253 -26.66774 -25.71913 -25.22849 -25.01830 -23.42532 -21.88467 -20.11752 -19.35611 -18.26669 -18.05491 -17.63698 -16.55272 -16.30632 -15.98093 -15.67183 -15.32054 -15.04743 -14.69636 -14.53201 -13.91733 -13.75898 -13.70007 -13.36340 -13.03839 -12.98274 -12.51464 -12.43504 -12.24099 -12.07754 -11.78892 -11.67465 -11.60465 -11.41278 -11.22006 -11.12901 -11.03074 -10.98723 -10.90151 -10.69156 -10.53581 -10.44668 -10.37350 -10.26984 -10.09955 -9.65303 -9.58114 -8.99198 -8.64580 -8.39885 -6.03216 -4.15300 0.77953 1.97670 2.69482 3.12064 3.27269 3.32721 3.34390 4.20708 4.30165 4.38213 4.50680 4.58896 4.68678 4.86489 4.94788 4.99731 5.21136 5.21818 5.29589 5.36281 5.41239 5.55596 5.63548 5.70437 5.71558 5.76737 5.82599 5.85093 6.00547 6.16628 6.23942 6.28854 6.38887 6.65820 6.70443 6.79372 6.90098 7.03797 7.31290 7.50108 7.65743 7.67753 7.97904 8.09320 8.32981 8.82888 9.50055 10.98094 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021015 B = 0.003589 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.035187 B = 7798.735627 C = 8195.979375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.161 3.839 3 H 0.114 0.886 4 C -0.088 4.088 5 H 0.118 0.882 6 C 0.488 3.512 7 O -0.507 6.507 8 O -0.515 6.515 9 C -0.110 4.110 10 C -0.131 4.131 11 C 0.112 3.888 12 N -1.004 6.004 13 S 2.591 3.409 14 O -0.960 6.960 15 O -0.960 6.960 16 C -0.580 4.580 17 C 0.082 3.918 18 C -0.164 4.164 19 C -0.163 4.163 20 C -0.502 4.502 21 H 0.058 0.942 22 C 0.065 3.935 23 N -0.884 5.884 24 Si 0.896 3.104 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.277 1.277 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.409 0.591 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.068 0.932 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.095 0.905 41 H 0.027 0.973 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.027 0.973 45 H 0.095 0.905 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.601 -11.305 -17.376 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.054 3.946 3 H 0.132 0.868 4 C -0.108 4.108 5 H 0.136 0.864 6 C 0.329 3.671 7 O -0.394 6.394 8 O -0.327 6.327 9 C -0.148 4.148 10 C -0.170 4.170 11 C -0.013 4.013 12 N -0.839 5.839 13 S 2.691 3.309 14 O -0.951 6.951 15 O -0.950 6.950 16 C -0.714 4.714 17 C 0.080 3.920 18 C -0.221 4.221 19 C -0.221 4.221 20 C -0.542 4.542 21 H 0.076 0.924 22 C -0.137 4.137 23 N -0.522 5.522 24 Si 0.724 3.276 25 H -0.203 1.203 26 H -0.212 1.212 27 H -0.203 1.203 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.267 0.733 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.113 0.887 41 H 0.046 0.954 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.046 0.954 45 H 0.114 0.886 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.471 -11.001 -16.868 20.290 hybrid contribution -1.704 0.686 0.273 1.857 sum -4.175 -10.315 -16.596 19.981 Atomic orbital electron populations 1.22407 0.94591 1.02643 1.03956 1.20670 0.94845 0.96645 0.82391 0.86781 1.21420 1.02581 0.97471 0.89359 0.86428 1.23320 0.75737 0.83647 0.84381 1.90736 1.42996 1.20388 1.85300 1.84533 1.76192 1.51257 1.20741 1.21550 1.01606 0.92262 0.99370 1.21804 1.01459 0.99616 0.94075 1.21375 1.01205 0.79403 0.99365 1.58156 1.75119 1.17181 1.33405 1.05800 0.76822 0.73892 0.74403 1.93535 1.75254 1.53819 1.72472 1.93528 1.65229 1.59478 1.76795 1.30568 1.16226 1.10717 1.13846 1.17934 0.94100 0.90997 0.89016 1.22276 0.98903 1.00208 1.00747 1.22271 0.98221 0.98876 1.02694 1.20901 0.92383 1.34216 1.06682 0.92367 1.24933 0.95497 0.95658 0.97605 1.69785 1.15761 1.38973 1.27662 0.86596 0.81742 0.78839 0.80447 1.20272 1.21175 1.20266 0.91272 0.90263 0.92043 0.73272 0.90822 0.90222 0.90141 0.90972 0.88341 0.91383 0.86386 0.86386 0.88654 0.95402 0.94450 0.94490 0.95437 0.88633 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 8.55 37.16 0.32 -1.68 16 2 C 0.16 2.07 2.38 -67.59 -0.16 1.91 16 3 H 0.11 1.70 6.81 -51.93 -0.35 1.35 16 4 C -0.09 -0.92 2.59 -91.65 -0.24 -1.16 16 5 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 6 C 0.49 5.06 7.17 36.01 0.26 5.31 16 7 O -0.51 -6.74 15.06 -18.75 -0.28 -7.02 16 8 O -0.52 -3.75 12.75 -39.25 -0.50 -4.25 16 9 C -0.11 -0.91 4.74 -26.69 -0.13 -1.03 16 10 C -0.13 -1.14 6.07 -26.83 -0.16 -1.30 16 11 C 0.11 1.22 6.02 -3.94 -0.02 1.20 16 12 N -1.00 -13.79 2.93 -106.72 -0.31 -14.10 16 13 S 2.59 47.72 4.49 -107.50 -0.48 47.24 16 14 O -0.96 -20.07 14.21 -57.54 -0.82 -20.89 16 15 O -0.96 -19.49 14.20 -57.54 -0.82 -20.31 16 16 C -0.58 -11.32 5.12 37.16 0.19 -11.13 16 17 C 0.08 1.98 0.52 -155.66 -0.08 1.90 16 18 C -0.16 -4.06 7.78 37.16 0.29 -3.77 16 19 C -0.16 -4.00 7.77 37.16 0.29 -3.71 16 20 C -0.50 -13.20 8.01 -34.44 -0.28 -13.48 16 21 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 22 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 23 N -0.88 -24.16 9.35 55.43 0.52 -23.64 16 24 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 0.93 6.01 -51.93 -0.31 0.61 16 30 H 0.06 0.57 5.78 -51.93 -0.30 0.27 16 31 H 0.41 1.32 9.10 45.56 0.41 1.74 16 32 H 0.07 0.56 6.38 -51.93 -0.33 0.23 16 33 H 0.08 0.57 7.82 -51.93 -0.41 0.16 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 1.15 6.85 -51.93 -0.36 0.80 16 37 H 0.07 0.61 7.67 -51.93 -0.40 0.21 16 38 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 39 H 0.12 2.13 8.14 -51.92 -0.42 1.70 16 40 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 41 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 42 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.03 0.64 5.46 -51.93 -0.28 0.35 16 45 H 0.10 2.53 6.07 -51.93 -0.31 2.21 16 46 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 356.37 15.07 5.37 5.37 Total: -1.00 -33.02 356.37 -8.32 -41.35 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.16 Total: 5.90 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: 0.18 Total: -25.29 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.21 Total: -37.74 kcal Atomic # 8 Polarization: -50.05 SS G_CDS: -2.42 Total: -52.47 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 47.72 SS G_CDS: -0.48 Total: 47.24 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.02 -8.32 -41.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263295184.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.079 kcal (2) G-P(sol) polarization free energy of solvation -33.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds