Wall clock time and date at job start Tue Mar 31 2020 17:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.58766 * 2 1 4 4 C 1.53196 * 109.58384 * 239.56895 * 2 1 3 5 5 H 1.09004 * 109.49618 * 174.86599 * 4 2 1 6 6 C 1.50701 * 109.49713 * 54.80165 * 4 2 1 7 7 O 1.20832 * 119.99824 * 18.73622 * 6 4 2 8 8 O 1.34226 * 120.00161 * 198.73265 * 6 4 2 9 9 C 1.53038 * 109.31132 * 294.84910 * 4 2 1 10 10 C 1.53040 * 109.54174 * 298.63314 * 9 4 2 11 11 C 1.52758 * 109.37981 * 61.24173 * 10 9 4 12 12 N 1.46924 * 109.01167 * 305.58906 * 11 10 9 13 13 S 1.65606 * 120.63070 * 233.58658 * 12 11 10 14 14 O 1.42097 * 104.27457 * 153.64762 * 13 12 11 15 15 O 1.42092 * 104.27467 * 25.79060 * 13 12 11 16 16 C 1.81399 * 104.44737 * 269.71589 * 13 12 11 17 17 C 1.52995 * 109.47134 * 180.02562 * 16 13 12 18 18 C 1.52999 * 109.47468 * 60.00006 * 17 16 13 19 19 C 1.53006 * 109.47288 * 300.00407 * 17 16 13 20 20 C 1.50694 * 109.47518 * 180.02562 * 17 16 13 21 21 H 1.08005 * 120.00096 * 359.72044 * 20 17 16 22 22 C 1.37882 * 120.00435 * 179.97438 * 20 17 16 23 23 N 1.31506 * 119.99806 * 359.97438 * 22 20 17 24 24 Si 1.86799 * 119.99951 * 179.97438 * 22 20 17 25 25 H 1.48495 * 109.47093 * 60.00273 * 24 22 20 26 26 H 1.48501 * 109.46847 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47225 * 299.99973 * 24 22 20 28 28 H 1.09001 * 109.47008 * 294.31214 * 1 2 3 29 29 H 1.08996 * 109.47194 * 54.30811 * 1 2 3 30 30 H 1.08998 * 109.47292 * 174.31355 * 1 2 3 31 31 H 0.96700 * 117.00105 * 180.02562 * 8 6 4 32 32 H 1.09000 * 109.46189 * 58.65865 * 9 4 2 33 33 H 1.09007 * 109.45676 * 178.62519 * 9 4 2 34 34 H 1.08995 * 109.49948 * 181.31788 * 10 9 4 35 35 H 1.09001 * 109.49508 * 301.38946 * 10 9 4 36 36 H 1.08998 * 109.50700 * 185.70585 * 11 10 9 37 37 H 1.08998 * 109.43315 * 65.42728 * 11 10 9 38 38 H 1.08999 * 109.46996 * 60.00232 * 16 13 12 39 39 H 1.08999 * 109.47287 * 300.00033 * 16 13 12 40 40 H 1.08995 * 109.47883 * 179.97438 * 18 17 16 41 41 H 1.09006 * 109.46797 * 300.00788 * 18 17 16 42 42 H 1.09004 * 109.46502 * 59.99828 * 18 17 16 43 43 H 1.09004 * 109.46520 * 300.00091 * 19 17 16 44 44 H 1.08997 * 109.46877 * 59.99398 * 19 17 16 45 45 H 1.08995 * 109.47368 * 180.02562 * 19 17 16 46 46 H 0.97000 * 120.00535 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7311 -1.2445 5 1 3.1297 -0.6516 -1.2908 6 6 1.4406 -0.1092 -2.4777 7 8 0.9650 1.0003 -2.4240 8 8 1.4321 -0.7876 -3.6359 9 6 1.6413 -2.2056 -1.1672 10 6 2.2799 -2.8464 0.0672 11 6 1.7740 -2.1404 1.3238 12 7 2.0225 -0.6981 1.1954 13 16 2.8482 0.1239 2.3723 14 8 3.4276 1.2266 1.6887 15 8 3.6611 -0.8664 2.9867 16 6 1.5601 0.6903 3.5172 17 6 2.2044 1.4734 4.6627 18 6 2.9516 2.6828 4.0970 19 6 3.1882 0.5695 5.4085 20 6 1.1345 1.9434 5.6142 21 1 0.0980 1.7111 5.4187 22 6 1.4782 2.6746 6.7315 23 7 2.7398 2.9614 6.9672 24 14 0.1518 3.2578 7.9104 25 1 -0.5737 2.0840 8.4591 26 1 0.7773 4.0178 9.0224 27 1 -0.8025 4.1357 7.1868 28 1 -0.3633 0.4231 0.9365 29 1 -0.3633 0.5995 -0.8346 30 1 -0.3634 -1.0226 -0.1018 31 1 1.0348 -0.3474 -4.3997 32 1 0.5564 -2.2829 -1.0963 33 1 1.9844 -2.7230 -2.0633 34 1 2.0121 -3.9021 0.1087 35 1 3.3639 -2.7479 0.0085 36 1 2.3024 -2.5261 2.1956 37 1 0.7043 -2.3185 1.4340 38 1 1.0276 -0.1712 3.9199 39 1 0.8596 1.3347 2.9860 40 1 3.4103 3.2410 4.9131 41 1 3.7255 2.3424 3.4090 42 1 2.2507 3.3268 3.5657 43 1 2.6559 -0.2921 5.8116 44 1 3.9621 0.2292 4.7206 45 1 3.6469 1.1272 6.2249 46 1 2.9817 3.4754 7.7534 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263295184.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:19 Heat of formation + Delta-G solvation = -191.275894 kcal Electronic energy + Delta-G solvation = -29144.921990 eV Core-core repulsion = 25160.636590 eV Total energy + Delta-G solvation = -3984.285401 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.75102 -39.48389 -38.21541 -38.13627 -37.11115 -36.90785 -33.75938 -33.63566 -33.21311 -29.02849 -28.35224 -27.71194 -27.25519 -25.83709 -24.30127 -22.65883 -21.37945 -20.97911 -19.30750 -19.00007 -18.85142 -17.95608 -17.36846 -17.28573 -16.94771 -16.81607 -16.57024 -15.90598 -15.60166 -15.12952 -14.74961 -14.71813 -14.58036 -14.43330 -14.35594 -14.15084 -13.84638 -13.42034 -13.22780 -13.11235 -12.98640 -12.87496 -12.80823 -12.64774 -12.53003 -12.44064 -12.28247 -12.21063 -12.16346 -12.01330 -11.94365 -11.77673 -11.58296 -11.47353 -11.29797 -11.20491 -10.65234 -10.41964 -9.95299 -8.03601 -6.22487 -0.67588 1.18888 1.44847 1.45361 1.52612 1.66608 2.17703 2.43810 2.87140 3.17427 3.22015 3.35876 3.71888 3.84931 3.95138 4.07211 4.11992 4.17512 4.19675 4.40757 4.51648 4.56358 4.58347 4.65620 4.81065 4.84629 4.85753 4.91953 4.96067 4.96764 5.04200 5.06694 5.15561 5.26075 5.29834 5.37100 5.47211 5.48583 5.60205 5.63352 5.71754 5.95537 6.10008 6.33104 6.81801 7.01572 7.45763 8.96153 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021015 B = 0.003589 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.035187 B = 7798.735627 C = 8195.979375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.154 3.846 3 H 0.085 0.915 4 C -0.091 4.091 5 H 0.114 0.886 6 C 0.497 3.503 7 O -0.542 6.542 8 O -0.503 6.503 9 C -0.103 4.103 10 C -0.128 4.128 11 C 0.098 3.902 12 N -0.993 5.993 13 S 2.608 3.392 14 O -0.991 6.991 15 O -0.981 6.981 16 C -0.585 4.585 17 C 0.069 3.931 18 C -0.159 4.159 19 C -0.158 4.158 20 C -0.519 4.519 21 H 0.062 0.938 22 C 0.018 3.982 23 N -0.908 5.908 24 Si 0.954 3.046 25 H -0.270 1.270 26 H -0.287 1.287 27 H -0.273 1.273 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.428 0.572 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.138 0.862 39 H 0.130 0.870 40 H 0.071 0.929 41 H 0.031 0.969 42 H 0.036 0.964 43 H 0.042 0.958 44 H 0.031 0.969 45 H 0.071 0.929 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.412 -13.430 -18.915 23.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.048 3.952 3 H 0.103 0.897 4 C -0.112 4.112 5 H 0.132 0.868 6 C 0.340 3.660 7 O -0.433 6.433 8 O -0.317 6.317 9 C -0.140 4.140 10 C -0.167 4.167 11 C -0.026 4.026 12 N -0.831 5.831 13 S 2.707 3.293 14 O -0.981 6.981 15 O -0.971 6.971 16 C -0.718 4.718 17 C 0.067 3.933 18 C -0.217 4.217 19 C -0.215 4.215 20 C -0.558 4.558 21 H 0.081 0.919 22 C -0.181 4.181 23 N -0.547 5.547 24 Si 0.780 3.220 25 H -0.195 1.195 26 H -0.213 1.213 27 H -0.198 1.198 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.290 0.710 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.156 0.844 39 H 0.148 0.852 40 H 0.090 0.910 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.050 0.950 45 H 0.089 0.911 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.288 -13.139 -18.419 23.028 hybrid contribution -1.122 1.297 0.637 1.829 sum -5.411 -11.842 -17.782 22.039 Atomic orbital electron populations 1.22376 0.93142 1.04138 1.03506 1.20744 0.95966 0.95571 0.82915 0.89659 1.21407 1.02369 0.98966 0.88461 0.86801 1.23179 0.74850 0.82982 0.85025 1.90737 1.44722 1.21879 1.85937 1.84473 1.75852 1.50729 1.20602 1.21571 1.02397 0.90184 0.99875 1.21834 1.00848 1.01052 0.92942 1.21769 1.03039 0.77322 1.00438 1.57744 1.74789 1.18280 1.32281 1.04930 0.76561 0.73300 0.74459 1.93490 1.76187 1.55496 1.72945 1.93491 1.66121 1.59780 1.77740 1.30518 1.16960 1.11250 1.13056 1.17925 0.93824 0.91141 0.90430 1.22203 0.99036 1.00570 0.99888 1.22184 0.98506 0.98771 1.02082 1.21259 0.93057 1.34235 1.07232 0.91943 1.25681 0.97283 0.95952 0.99227 1.69931 1.17319 1.39433 1.27977 0.85668 0.79385 0.78473 0.78442 1.19510 1.21255 1.19848 0.91791 0.90708 0.89491 0.70969 0.89448 0.88379 0.87069 0.92027 0.89258 0.88622 0.84394 0.85196 0.91008 0.95027 0.94448 0.93926 0.94979 0.91062 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.56 8.55 71.98 0.62 -2.95 16 2 C 0.15 3.80 2.38 44.98 0.11 3.90 16 3 H 0.09 2.59 6.81 -2.39 -0.02 2.58 16 4 C -0.09 -1.74 2.59 -11.46 -0.03 -1.77 16 5 H 0.11 2.25 8.14 -2.39 -0.02 2.24 16 6 C 0.50 9.34 7.17 71.24 0.51 9.85 16 7 O -0.54 -13.95 15.06 21.95 0.33 -13.62 16 8 O -0.50 -5.79 12.75 -51.38 -0.65 -6.45 16 9 C -0.10 -1.30 4.74 30.62 0.15 -1.16 16 10 C -0.13 -1.79 6.07 30.53 0.19 -1.60 16 11 C 0.10 1.88 6.02 86.22 0.52 2.40 16 12 N -0.99 -25.97 2.93 -491.54 -1.44 -27.41 16 13 S 2.61 95.80 4.49 -56.49 -0.25 95.55 16 14 O -0.99 -42.27 14.21 -127.65 -1.81 -44.09 16 15 O -0.98 -39.72 14.20 -127.65 -1.81 -41.53 16 16 C -0.59 -22.56 5.12 71.98 0.37 -22.20 16 17 C 0.07 3.37 0.52 -52.93 -0.03 3.34 16 18 C -0.16 -8.12 7.78 71.98 0.56 -7.56 16 19 C -0.16 -7.86 7.77 71.98 0.56 -7.30 16 20 C -0.52 -27.28 8.01 25.60 0.21 -27.07 16 21 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 22 C 0.02 0.96 5.15 84.66 0.44 1.40 16 23 N -0.91 -50.72 9.35 21.45 0.20 -50.52 16 24 Si 0.95 42.36 29.54 68.60 2.03 44.39 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 27 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 1.65 6.01 -2.39 -0.01 1.63 16 30 H 0.09 1.31 5.78 -2.39 -0.01 1.29 16 31 H 0.43 1.48 9.10 -74.06 -0.67 0.81 16 32 H 0.09 0.90 6.38 -2.39 -0.02 0.89 16 33 H 0.10 0.95 7.82 -2.38 -0.02 0.93 16 34 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.09 1.91 6.85 -2.39 -0.02 1.90 16 37 H 0.10 1.33 7.67 -2.39 -0.02 1.31 16 38 H 0.14 4.66 8.14 -2.39 -0.02 4.64 16 39 H 0.13 4.62 8.14 -2.39 -0.02 4.60 16 40 H 0.07 3.97 6.07 -2.39 -0.01 3.96 16 41 H 0.03 1.54 5.46 -2.38 -0.01 1.53 16 42 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 43 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.03 1.52 5.46 -2.39 -0.01 1.51 16 45 H 0.07 3.88 6.07 -2.39 -0.01 3.87 16 46 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -72.36 356.37 1.06 -71.29 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 0.33 Total: 23.10 kcal Atomic # 6 Polarization: -54.86 SS G_CDS: 4.15 Total: -50.71 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -1.24 Total: -77.93 kcal Atomic # 8 Polarization: -101.73 SS G_CDS: -3.95 Total: -105.69 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: 95.80 SS G_CDS: -0.25 Total: 95.55 kcal Total: -72.36 1.06 -71.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263295184.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.981 kcal (2) G-P(sol) polarization free energy of solvation -72.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds