Wall clock time and date at job start Tue Mar 31 2020 18:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34229 * 117.00017 * 2 1 4 4 O 1.20826 * 120.00160 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00245 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.46959 * 59.99684 * 5 3 2 7 7 C 1.52990 * 109.46976 * 299.99669 * 5 3 2 8 8 C 1.53007 * 109.47150 * 179.97438 * 5 3 2 9 9 N 1.46500 * 109.46992 * 185.00105 * 8 5 3 10 10 C 1.34770 * 120.00149 * 179.97438 * 9 8 5 11 11 O 1.21722 * 119.99697 * 0.02562 * 10 9 8 12 12 C 1.46250 * 120.00046 * 179.97438 * 10 9 8 13 13 C 1.35031 * 119.99722 * 180.02562 * 12 10 9 14 14 C 1.46959 * 119.99896 * 180.27394 * 13 12 10 15 15 C 1.40027 * 120.10017 * 359.45143 * 14 13 12 16 16 C 1.37601 * 119.89863 * 179.78912 * 15 14 13 17 17 C 1.39178 * 120.09610 * 0.48118 * 16 15 14 18 18 O 1.35575 * 119.89259 * 179.76441 * 17 16 15 19 19 C 1.34788 * 116.99533 * 174.42515 * 18 17 16 20 20 H 1.08001 * 120.00124 * 5.05799 * 19 18 17 21 21 C 1.38720 * 119.99795 * 185.06035 * 19 18 17 22 22 N 1.31507 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 119.99984 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47193 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47306 * 119.99699 * 23 21 19 26 26 H 1.48503 * 109.47196 * 239.99770 * 23 21 19 27 27 C 1.39170 * 120.20621 * 359.74800 * 17 16 15 28 28 C 1.37600 * 120.10262 * 0.02562 * 27 17 16 29 29 H 1.09004 * 109.46836 * 60.00281 * 1 2 3 30 30 H 1.08998 * 109.46867 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46977 * 300.00237 * 1 2 3 32 32 H 1.09001 * 109.47581 * 59.99906 * 7 5 3 33 33 H 1.09001 * 109.47193 * 179.97438 * 7 5 3 34 34 H 1.08999 * 109.47695 * 299.99872 * 7 5 3 35 35 H 1.08994 * 109.46464 * 65.00032 * 8 5 3 36 36 H 1.09003 * 109.46757 * 305.00007 * 8 5 3 37 37 H 0.96999 * 119.99522 * 359.97438 * 9 8 5 38 38 H 1.07990 * 120.00180 * 359.97438 * 12 10 9 39 39 H 1.08000 * 120.00105 * 359.97438 * 13 12 10 40 40 H 1.08005 * 120.04944 * 359.97438 * 15 14 13 41 41 H 1.07995 * 119.95289 * 180.22906 * 16 15 14 42 42 H 0.97004 * 119.99419 * 180.02562 * 22 21 19 43 43 H 1.07998 * 119.95118 * 179.97438 * 27 17 16 44 44 H 1.07997 * 120.05056 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7806 -0.8892 7 6 4.1128 0.5817 1.2502 8 6 4.0001 2.7422 -0.0002 9 7 5.4581 2.8203 -0.1200 10 6 6.0690 4.0214 -0.1425 11 8 5.4094 5.0413 -0.0628 12 6 7.5246 4.0993 -0.2616 13 6 8.1367 5.3027 -0.2837 14 6 9.5988 5.3812 -0.4094 15 6 10.3602 4.2092 -0.4949 16 6 11.7285 4.2876 -0.6169 17 6 12.3567 5.5292 -0.6452 18 8 13.7056 5.6016 -0.7607 19 6 14.2428 6.8300 -0.8986 20 1 13.6136 7.7053 -0.8313 21 6 15.6039 6.9701 -1.1269 22 7 16.3701 5.9044 -1.2083 23 14 16.3484 8.6725 -1.3187 24 1 15.2815 9.6971 -1.1870 25 1 17.3732 8.8862 -0.2654 26 1 16.9823 8.7877 -2.6567 27 6 11.6044 6.6967 -0.5557 28 6 10.2352 6.6281 -0.4381 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.8038 -0.4636 1.2504 33 1 5.2014 0.6384 1.2504 34 1 3.7228 1.0760 2.1399 35 1 3.6862 3.2142 0.9307 36 1 3.5382 3.2572 -0.8426 37 1 5.9837 2.0075 -0.1832 38 1 8.1099 3.1945 -0.3311 39 1 7.5513 6.2077 -0.2138 40 1 9.8739 3.2452 -0.4682 41 1 12.3163 3.3843 -0.6866 42 1 17.3219 6.0024 -1.3676 43 1 12.0962 7.6580 -0.5777 44 1 9.6522 7.5346 -0.3692 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263760694.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:14 Heat of formation + Delta-G solvation = -115.622697 kcal Electronic energy + Delta-G solvation = -26136.021988 eV Core-core repulsion = 22019.573205 eV Total energy + Delta-G solvation = -4116.448783 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.09069 -39.62592 -39.13511 -37.23992 -36.89185 -35.97860 -33.23662 -32.87204 -32.27374 -30.44079 -28.61955 -28.18299 -26.93183 -25.67128 -24.35201 -22.83558 -22.13529 -20.84422 -20.77287 -19.37641 -18.22456 -18.08381 -17.35528 -17.12294 -17.01908 -16.56363 -15.79487 -15.51322 -14.97119 -14.78438 -14.46644 -14.38686 -14.06851 -14.00106 -13.83339 -13.55677 -13.35366 -13.09634 -13.04074 -12.88236 -12.60182 -12.46945 -11.95247 -11.93426 -11.75024 -11.72623 -11.63512 -11.27905 -11.15244 -11.08392 -10.84720 -10.67207 -10.53746 -9.84043 -9.62111 -9.50421 -9.20594 -8.86400 -8.39223 -7.12652 -6.66287 -4.21020 1.05750 1.71594 2.09576 2.12625 2.54622 3.03011 3.04436 3.10084 3.25667 3.56707 3.81510 3.98543 4.28847 4.34773 4.50117 4.62766 4.66688 4.72279 4.91315 4.97625 5.03441 5.05205 5.18241 5.20855 5.26623 5.39121 5.51805 5.55832 5.61840 5.65831 5.69115 5.88569 6.00370 6.10756 6.26053 6.45236 6.47029 6.59581 6.78116 6.91128 7.12103 7.22638 7.24459 7.27040 7.48298 7.62919 7.79282 8.30823 8.78752 9.45527 10.50395 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.042964 B = 0.001488 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.555940 B =18808.867983 C =19332.555657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.469 3.531 4 O -0.499 6.499 5 C -0.095 4.095 6 H 0.118 0.882 7 C -0.147 4.147 8 C 0.136 3.864 9 N -0.734 5.734 10 C 0.557 3.443 11 O -0.555 6.555 12 C -0.284 4.284 13 C 0.040 3.960 14 C -0.200 4.200 15 C -0.043 4.043 16 C -0.199 4.199 17 C 0.167 3.833 18 O -0.163 6.163 19 C -0.393 4.393 20 H 0.098 0.902 21 C 0.042 3.958 22 N -0.852 5.852 23 Si 0.945 3.055 24 H -0.264 1.264 25 H -0.274 1.274 26 H -0.274 1.274 27 C -0.242 4.242 28 C -0.034 4.034 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.400 0.600 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.274 0.726 43 H 0.131 0.869 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.146 -12.241 2.416 26.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.311 3.689 4 O -0.386 6.386 5 C -0.115 4.115 6 H 0.136 0.864 7 C -0.204 4.204 8 C 0.012 3.988 9 N -0.387 5.387 10 C 0.349 3.651 11 O -0.434 6.434 12 C -0.305 4.305 13 C 0.020 3.980 14 C -0.201 4.201 15 C -0.061 4.061 16 C -0.219 4.219 17 C 0.110 3.890 18 O -0.064 6.064 19 C -0.468 4.468 20 H 0.115 0.885 21 C -0.164 4.164 22 N -0.484 5.484 23 Si 0.769 3.231 24 H -0.188 1.188 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.261 4.261 28 C -0.053 4.053 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.235 0.765 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.084 0.916 43 H 0.149 0.851 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -23.395 -11.445 2.434 26.158 hybrid contribution 0.381 0.409 -0.168 0.584 sum -23.013 -11.036 2.266 25.623 Atomic orbital electron populations 1.23308 0.75976 1.03860 1.02767 1.86489 1.23659 1.33175 1.84045 1.23455 0.91573 0.81499 0.72397 1.90725 1.67076 1.36247 1.44538 1.21210 0.88090 0.98932 1.03259 0.86447 1.21824 1.02241 1.01035 0.95320 1.21045 0.81046 0.92779 1.03945 1.45776 1.06870 1.08996 1.77084 1.18400 0.88712 0.82555 0.75422 1.90800 1.67264 1.34657 1.50728 1.22391 0.92104 0.99272 1.16708 1.22299 0.92819 0.97401 0.85458 1.18462 0.91614 0.93644 1.16339 1.20880 0.92649 0.96945 0.95622 1.20150 0.94015 0.95742 1.11964 1.19619 0.84518 0.93477 0.91355 1.83905 1.14633 1.32408 1.75412 1.21533 0.92425 0.82136 1.50752 0.88467 1.25393 0.95148 0.99963 0.95942 1.70024 1.06105 1.29024 1.43277 0.85583 0.79312 0.79721 0.78504 1.18844 1.19914 1.19907 1.21103 0.93942 0.98913 1.12171 1.20995 0.93929 0.96051 0.94307 0.91732 0.87913 0.91746 0.90751 0.90489 0.91623 0.90554 0.90477 0.76514 0.85808 0.85910 0.86388 0.86126 0.91646 0.85113 0.86794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.56 101.05 1.07 1.24 16 2 O -0.36 -2.60 10.47 -39.25 -0.41 -3.02 16 3 C 0.47 4.04 7.26 36.01 0.26 4.30 16 4 O -0.50 -5.93 15.67 -18.75 -0.29 -6.22 16 5 C -0.10 -0.62 2.86 -91.77 -0.26 -0.88 16 6 H 0.12 0.53 8.14 -51.93 -0.42 0.10 16 7 C -0.15 -0.73 9.00 37.15 0.33 -0.39 16 8 C 0.14 1.30 4.41 -4.04 -0.02 1.28 16 9 N -0.73 -7.02 5.28 -61.76 -0.33 -7.35 16 10 C 0.56 7.62 7.74 -13.04 -0.10 7.52 16 11 O -0.55 -9.81 16.23 5.17 0.08 -9.73 16 12 C -0.28 -3.72 9.41 -37.50 -0.35 -4.08 16 13 C 0.04 0.60 9.45 -37.19 -0.35 0.25 16 14 C -0.20 -3.35 5.87 -105.03 -0.62 -3.96 16 15 C -0.04 -0.71 9.40 -39.14 -0.37 -1.08 16 16 C -0.20 -3.92 9.97 -39.47 -0.39 -4.31 16 17 C 0.17 3.79 6.66 -38.89 -0.26 3.54 16 18 O -0.16 -4.38 9.74 0.70 0.01 -4.38 16 19 C -0.39 -10.38 9.48 30.91 0.29 -10.09 16 20 H 0.10 2.37 5.18 -52.49 -0.27 2.09 16 21 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 22 N -0.85 -23.68 13.67 55.48 0.76 -22.92 16 23 Si 0.94 19.43 29.55 -169.99 -5.02 14.41 16 24 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 26 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 27 C -0.24 -4.97 9.14 -39.47 -0.36 -5.33 16 28 C -0.03 -0.61 9.78 -39.15 -0.38 -0.99 16 29 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 30 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 32 H 0.07 0.30 8.11 -51.93 -0.42 -0.12 16 33 H 0.08 0.31 7.18 -51.93 -0.37 -0.06 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.88 7.96 -51.93 -0.41 0.46 16 37 H 0.40 2.55 7.63 -40.82 -0.31 2.23 16 38 H 0.12 1.34 6.06 -52.49 -0.32 1.03 16 39 H 0.12 1.85 7.52 -52.49 -0.39 1.45 16 40 H 0.12 1.56 6.16 -52.48 -0.32 1.24 16 41 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 42 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.13 2.67 5.62 -52.49 -0.29 2.37 16 44 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 383.11 15.07 5.77 5.77 Total: -1.00 -33.28 383.11 -6.68 -39.96 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.64 Total: 5.46 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -1.61 Total: -11.99 kcal Atomic # 7 Polarization: -30.70 SS G_CDS: 0.43 Total: -30.27 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.61 Total: -23.34 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.28 -6.68 -39.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263760694.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.667 kcal (2) G-P(sol) polarization free energy of solvation -33.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds