Wall clock time and date at job start Tue Mar 31 2020 18:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34229 * 117.00017 * 2 1 4 4 O 1.20826 * 120.00160 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00245 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.46959 * 59.99684 * 5 3 2 7 7 C 1.52990 * 109.46976 * 299.99669 * 5 3 2 8 8 C 1.53007 * 109.47150 * 179.97438 * 5 3 2 9 9 N 1.46500 * 109.46992 * 185.00105 * 8 5 3 10 10 C 1.34770 * 120.00149 * 179.97438 * 9 8 5 11 11 O 1.21722 * 119.99697 * 0.02562 * 10 9 8 12 12 C 1.46250 * 120.00046 * 179.97438 * 10 9 8 13 13 C 1.35031 * 119.99722 * 180.02562 * 12 10 9 14 14 C 1.46959 * 119.99896 * 180.27394 * 13 12 10 15 15 C 1.40027 * 120.10017 * 359.45143 * 14 13 12 16 16 C 1.37601 * 119.89863 * 179.78912 * 15 14 13 17 17 C 1.39178 * 120.09610 * 0.48118 * 16 15 14 18 18 O 1.35575 * 119.89259 * 179.76441 * 17 16 15 19 19 C 1.34788 * 116.99533 * 174.42515 * 18 17 16 20 20 H 1.08001 * 120.00124 * 5.05799 * 19 18 17 21 21 C 1.38720 * 119.99795 * 185.06035 * 19 18 17 22 22 N 1.31507 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 119.99984 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47193 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47306 * 119.99699 * 23 21 19 26 26 H 1.48503 * 109.47196 * 239.99770 * 23 21 19 27 27 C 1.39170 * 120.20621 * 359.74800 * 17 16 15 28 28 C 1.37600 * 120.10262 * 0.02562 * 27 17 16 29 29 H 1.09004 * 109.46836 * 60.00281 * 1 2 3 30 30 H 1.08998 * 109.46867 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46977 * 300.00237 * 1 2 3 32 32 H 1.09001 * 109.47581 * 59.99906 * 7 5 3 33 33 H 1.09001 * 109.47193 * 179.97438 * 7 5 3 34 34 H 1.08999 * 109.47695 * 299.99872 * 7 5 3 35 35 H 1.08994 * 109.46464 * 65.00032 * 8 5 3 36 36 H 1.09003 * 109.46757 * 305.00007 * 8 5 3 37 37 H 0.96999 * 119.99522 * 359.97438 * 9 8 5 38 38 H 1.07990 * 120.00180 * 359.97438 * 12 10 9 39 39 H 1.08000 * 120.00105 * 359.97438 * 13 12 10 40 40 H 1.08005 * 120.04944 * 359.97438 * 15 14 13 41 41 H 1.07995 * 119.95289 * 180.22906 * 16 15 14 42 42 H 0.97004 * 119.99419 * 180.02562 * 22 21 19 43 43 H 1.07998 * 119.95118 * 179.97438 * 27 17 16 44 44 H 1.07997 * 120.05056 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7806 -0.8892 7 6 4.1128 0.5817 1.2502 8 6 4.0001 2.7422 -0.0002 9 7 5.4581 2.8203 -0.1200 10 6 6.0690 4.0214 -0.1425 11 8 5.4094 5.0413 -0.0628 12 6 7.5246 4.0993 -0.2616 13 6 8.1367 5.3027 -0.2837 14 6 9.5988 5.3812 -0.4094 15 6 10.3602 4.2092 -0.4949 16 6 11.7285 4.2876 -0.6169 17 6 12.3567 5.5292 -0.6452 18 8 13.7056 5.6016 -0.7607 19 6 14.2428 6.8300 -0.8986 20 1 13.6136 7.7053 -0.8313 21 6 15.6039 6.9701 -1.1269 22 7 16.3701 5.9044 -1.2083 23 14 16.3484 8.6725 -1.3187 24 1 15.2815 9.6971 -1.1870 25 1 17.3732 8.8862 -0.2654 26 1 16.9823 8.7877 -2.6567 27 6 11.6044 6.6967 -0.5557 28 6 10.2352 6.6281 -0.4381 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.8038 -0.4636 1.2504 33 1 5.2014 0.6384 1.2504 34 1 3.7228 1.0760 2.1399 35 1 3.6862 3.2142 0.9307 36 1 3.5382 3.2572 -0.8426 37 1 5.9837 2.0075 -0.1832 38 1 8.1099 3.1945 -0.3311 39 1 7.5513 6.2077 -0.2138 40 1 9.8739 3.2452 -0.4682 41 1 12.3163 3.3843 -0.6866 42 1 17.3219 6.0024 -1.3676 43 1 12.0962 7.6580 -0.5777 44 1 9.6522 7.5346 -0.3692 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263760694.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:13 Heat of formation + Delta-G solvation = -137.277003 kcal Electronic energy + Delta-G solvation = -26136.960989 eV Core-core repulsion = 22019.573205 eV Total energy + Delta-G solvation = -4117.387784 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.76137 -40.89713 -40.56035 -38.51151 -37.85033 -36.82452 -34.72508 -34.04125 -33.61285 -31.94554 -29.89509 -28.72437 -27.82067 -27.33562 -25.21023 -24.03584 -23.57684 -22.08043 -21.48422 -20.64807 -19.75239 -18.85130 -18.76508 -18.34534 -17.72170 -17.27404 -16.83404 -16.42787 -16.38140 -16.29736 -15.91608 -15.60251 -15.32954 -15.15407 -14.76725 -14.60708 -14.58661 -14.14050 -14.08633 -13.83183 -13.59877 -13.38726 -13.29332 -13.13149 -12.91666 -12.72732 -12.55684 -12.51203 -12.18701 -12.16306 -12.10238 -11.83791 -11.51470 -11.19744 -11.11003 -11.02945 -10.57720 -10.13923 -9.86981 -8.66178 -8.51518 -6.17437 -0.22946 0.60744 1.06540 1.14677 1.36555 1.45531 1.50323 1.54129 2.15775 2.37719 2.38750 2.87630 3.19552 3.35725 3.44426 3.76438 3.81293 3.84540 3.97207 4.10764 4.15385 4.29849 4.31365 4.31791 4.37970 4.50024 4.58361 4.66794 4.70385 4.72267 4.84868 4.94368 4.96910 5.04681 5.21367 5.22296 5.30823 5.33038 5.34649 5.40303 5.60651 5.65903 5.83351 5.98669 6.12663 6.58421 6.61885 6.93248 7.28241 7.70432 8.70707 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.042964 B = 0.001488 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.555940 B =18808.867983 C =19332.555657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.355 6.355 3 C 0.469 3.531 4 O -0.541 6.541 5 C -0.084 4.084 6 H 0.147 0.853 7 C -0.144 4.144 8 C 0.138 3.862 9 N -0.709 5.709 10 C 0.550 3.450 11 O -0.597 6.597 12 C -0.241 4.241 13 C 0.014 3.986 14 C -0.170 4.170 15 C -0.036 4.036 16 C -0.206 4.206 17 C 0.129 3.871 18 O -0.220 6.220 19 C -0.416 4.416 20 H 0.105 0.895 21 C -0.017 4.017 22 N -0.913 5.913 23 Si 1.017 2.983 24 H -0.252 1.252 25 H -0.268 1.268 26 H -0.268 1.268 27 C -0.249 4.249 28 C -0.042 4.042 29 H 0.060 0.940 30 H 0.134 0.866 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.421 0.579 38 H 0.159 0.841 39 H 0.121 0.879 40 H 0.165 0.835 41 H 0.124 0.876 42 H 0.275 0.725 43 H 0.123 0.877 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.028 -14.117 2.587 29.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.313 3.687 4 O -0.430 6.430 5 C -0.104 4.104 6 H 0.165 0.835 7 C -0.202 4.202 8 C 0.014 3.986 9 N -0.362 5.362 10 C 0.342 3.658 11 O -0.480 6.480 12 C -0.261 4.261 13 C -0.006 4.006 14 C -0.171 4.171 15 C -0.054 4.054 16 C -0.225 4.225 17 C 0.077 3.923 18 O -0.125 6.125 19 C -0.492 4.492 20 H 0.122 0.878 21 C -0.216 4.216 22 N -0.550 5.550 23 Si 0.837 3.163 24 H -0.175 1.175 25 H -0.193 1.193 26 H -0.193 1.193 27 C -0.269 4.269 28 C -0.060 4.060 29 H 0.079 0.921 30 H 0.152 0.848 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.260 0.740 38 H 0.177 0.823 39 H 0.139 0.861 40 H 0.182 0.818 41 H 0.142 0.858 42 H 0.084 0.916 43 H 0.140 0.860 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -26.351 -13.394 2.616 29.675 hybrid contribution 0.559 0.725 -0.153 0.928 sum -25.792 -12.669 2.463 28.841 Atomic orbital electron populations 1.23564 0.74800 1.05813 1.02441 1.86484 1.24855 1.32284 1.83496 1.23892 0.92403 0.81261 0.71175 1.90718 1.68113 1.37588 1.46609 1.21186 0.86742 0.96923 1.05511 0.83497 1.21856 1.03086 1.01438 0.93778 1.20951 0.80591 0.94899 1.02184 1.45553 1.07125 1.08724 1.74782 1.18588 0.88958 0.82999 0.75280 1.90807 1.68130 1.36486 1.52541 1.22737 0.91988 0.99876 1.11540 1.22170 0.91479 0.98463 0.88496 1.18776 0.92714 0.93286 1.12294 1.21315 0.91227 0.98957 0.93852 1.20441 0.95509 0.94851 1.11676 1.20214 0.83944 0.95507 0.92679 1.83886 1.16620 1.32623 1.79411 1.21927 0.93143 0.82663 1.51484 0.87797 1.26571 0.95321 1.04184 0.95512 1.70151 1.06397 1.31530 1.46914 0.84542 0.78506 0.74718 0.78571 1.17502 1.19296 1.19329 1.21186 0.95187 0.98068 1.12423 1.21311 0.92842 0.97995 0.93860 0.92108 0.84832 0.92131 0.89345 0.88841 0.92710 0.92376 0.92463 0.74031 0.82335 0.86076 0.81792 0.85771 0.91616 0.85955 0.84042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 113.37 1.20 1.42 16 2 O -0.36 -4.35 10.47 -51.41 -0.54 -4.88 16 3 C 0.47 7.24 7.26 71.24 0.52 7.76 16 4 O -0.54 -12.60 15.67 21.96 0.34 -12.25 16 5 C -0.08 -0.82 2.86 -11.54 -0.03 -0.85 16 6 H 0.15 0.61 8.14 -2.38 -0.02 0.59 16 7 C -0.14 -0.87 9.00 71.98 0.65 -0.22 16 8 C 0.14 2.32 4.41 86.38 0.38 2.70 16 9 N -0.71 -10.60 5.28 -467.50 -2.47 -13.07 16 10 C 0.55 12.96 7.74 86.33 0.67 13.63 16 11 O -0.60 -19.86 16.23 -4.42 -0.07 -19.94 16 12 C -0.24 -5.05 9.41 23.62 0.22 -4.83 16 13 C 0.01 0.36 9.45 23.82 0.23 0.58 16 14 C -0.17 -5.13 5.87 -20.13 -0.12 -5.25 16 15 C -0.04 -1.06 9.40 22.55 0.21 -0.85 16 16 C -0.21 -7.95 9.97 22.34 0.22 -7.72 16 17 C 0.13 6.05 6.66 22.72 0.15 6.20 16 18 O -0.22 -12.67 9.74 -20.39 -0.20 -12.86 16 19 C -0.42 -23.35 9.48 67.94 0.64 -22.70 16 20 H 0.10 5.35 5.18 -2.91 -0.02 5.34 16 21 C -0.02 -0.94 5.49 84.86 0.47 -0.47 16 22 N -0.91 -54.02 13.67 21.62 0.30 -53.72 16 23 Si 1.02 41.42 29.55 68.60 2.03 43.45 16 24 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 25 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 26 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 27 C -0.25 -10.40 9.14 22.34 0.20 -10.20 16 28 C -0.04 -1.42 9.78 22.55 0.22 -1.20 16 29 H 0.06 0.56 8.13 -2.38 -0.02 0.54 16 30 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.06 0.56 8.13 -2.39 -0.02 0.54 16 32 H 0.09 0.35 8.11 -2.39 -0.02 0.33 16 33 H 0.09 0.27 7.18 -2.39 -0.02 0.25 16 34 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.06 1.23 7.96 -2.39 -0.02 1.21 16 37 H 0.42 2.90 7.63 -92.71 -0.71 2.19 16 38 H 0.16 2.24 6.06 -2.92 -0.02 2.22 16 39 H 0.12 3.28 7.52 -2.91 -0.02 3.26 16 40 H 0.16 3.30 6.16 -2.91 -0.02 3.28 16 41 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 42 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 43 H 0.12 5.20 5.62 -2.91 -0.02 5.19 16 44 H 0.14 3.93 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -79.81 383.11 5.55 -74.26 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.33 Total: 21.02 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 5.83 Total: -21.99 kcal Atomic # 7 Polarization: -64.62 SS G_CDS: -2.17 Total: -66.79 kcal Atomic # 8 Polarization: -49.47 SS G_CDS: -0.46 Total: -49.94 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -79.81 5.55 -74.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263760694.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.017 kcal (2) G-P(sol) polarization free energy of solvation -79.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds