Wall clock time and date at job start Tue Mar 31 2020 16:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46888 * 2 1 4 4 N 1.46498 * 109.46991 * 120.00161 * 2 1 3 5 5 C 1.46501 * 119.99482 * 124.83900 * 4 2 1 6 6 C 1.50700 * 109.47054 * 269.99506 * 5 4 2 7 7 O 1.20821 * 120.00152 * 0.02562 * 6 5 4 8 8 O 1.34227 * 119.99930 * 180.02562 * 6 5 4 9 9 C 1.34770 * 120.00076 * 304.83442 * 4 2 1 10 10 O 1.21719 * 120.00249 * 354.62254 * 9 4 2 11 11 C 1.46261 * 119.99865 * 174.62337 * 9 4 2 12 12 C 1.35025 * 119.99717 * 184.97556 * 11 9 4 13 13 C 1.46963 * 119.99757 * 180.02562 * 12 11 9 14 14 C 1.40031 * 120.09813 * 359.72506 * 13 12 11 15 15 C 1.37599 * 119.89203 * 179.69820 * 14 13 12 16 16 C 1.39181 * 120.10273 * 0.60009 * 15 14 13 17 17 O 1.35567 * 119.89558 * 179.70013 * 16 15 14 18 18 C 1.34783 * 116.99546 * 174.61837 * 17 16 15 19 19 H 1.07995 * 120.00070 * 5.03160 * 18 17 16 20 20 C 1.38726 * 119.99853 * 185.03218 * 18 17 16 21 21 N 1.31510 * 119.99648 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00167 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47217 * 90.00006 * 22 20 18 24 24 H 1.48495 * 109.47263 * 210.00380 * 22 20 18 25 25 H 1.48508 * 109.46853 * 330.00264 * 22 20 18 26 26 C 1.39170 * 120.20183 * 359.67514 * 16 15 14 27 27 C 1.37598 * 120.10195 * 0.02562 * 26 16 15 28 28 H 1.09001 * 109.46561 * 305.17281 * 1 2 3 29 29 H 1.08994 * 109.47441 * 65.16788 * 1 2 3 30 30 H 1.08992 * 109.47029 * 185.17298 * 1 2 3 31 31 H 1.08998 * 109.46385 * 240.00221 * 2 1 3 32 32 H 1.09006 * 109.46754 * 184.93656 * 3 2 1 33 33 H 1.09000 * 109.47488 * 304.93387 * 3 2 1 34 34 H 1.08996 * 109.47117 * 64.93770 * 3 2 1 35 35 H 1.08996 * 109.47317 * 29.99922 * 5 4 2 36 36 H 1.08998 * 109.46998 * 149.99785 * 5 4 2 37 37 H 0.96700 * 117.00011 * 179.97438 * 8 6 5 38 38 H 1.07999 * 119.99715 * 4.98059 * 11 9 4 39 39 H 1.07995 * 119.99885 * 359.97438 * 12 11 9 40 40 H 1.07995 * 120.04979 * 0.02562 * 14 13 12 41 41 H 1.07999 * 119.94430 * 180.27727 * 15 14 13 42 42 H 0.96998 * 119.99483 * 180.02562 * 21 20 18 43 43 H 1.08002 * 119.94886 * 179.97438 * 26 16 15 44 44 H 1.08004 * 120.05035 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.9459 -1.8170 1.0642 6 6 2.1644 -3.1004 0.9498 7 8 0.9567 -3.0767 0.9754 8 8 2.8101 -4.2700 0.8195 9 6 1.6144 -0.2898 2.4178 10 8 0.9229 0.7051 2.5341 11 6 2.0070 -1.0503 3.6039 12 6 1.5210 -0.7085 4.8164 13 6 1.9159 -1.4723 6.0082 14 6 2.7915 -2.5585 5.8879 15 6 3.1633 -3.2668 7.0074 16 6 2.6608 -2.9129 8.2562 17 8 3.0252 -3.6175 9.3556 18 6 2.5942 -3.1582 10.5472 19 1 1.9211 -2.3148 10.5894 20 6 3.0154 -3.7689 11.7194 21 7 3.8356 -4.7956 11.6679 22 14 2.4188 -3.1319 13.3710 23 1 1.1657 -3.8334 13.7487 24 1 3.4570 -3.3829 14.4027 25 1 2.1595 -1.6729 13.2744 26 6 1.7858 -1.8378 8.3797 27 6 1.4133 -1.1198 7.2666 28 1 -0.3632 0.5920 0.8401 29 1 -0.3634 0.4315 -0.9326 30 1 -0.3633 -1.0234 0.0927 31 1 1.8933 -0.5138 -0.8900 32 1 3.1265 1.4438 -0.0884 33 1 1.6063 1.9813 -0.8425 34 1 1.7507 1.9301 0.9309 35 1 3.5562 -1.6824 0.1712 36 1 3.5908 -1.8612 1.9418 37 1 2.2661 -5.0664 0.7501 38 1 2.6856 -1.8852 3.5098 39 1 0.8429 0.1267 4.9104 40 1 3.1784 -2.8364 4.9187 41 1 3.8421 -4.1019 6.9162 42 1 4.1298 -5.2228 12.4876 43 1 1.3980 -1.5670 9.3507 44 1 0.7345 -0.2853 7.3635 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268893035.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:40 Heat of formation + Delta-G solvation = -105.719422 kcal Electronic energy + Delta-G solvation = -27756.861515 eV Core-core repulsion = 23640.842171 eV Total energy + Delta-G solvation = -4116.019345 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.86997 -39.68670 -39.17932 -37.01753 -36.48257 -35.88866 -33.69998 -32.73135 -32.11584 -30.45380 -28.54048 -27.90938 -27.24530 -25.72799 -24.04955 -22.38122 -22.14146 -21.73809 -19.93885 -18.68175 -18.42317 -17.97584 -17.29474 -17.19141 -16.79550 -16.42232 -15.69965 -15.07549 -14.81301 -14.66431 -14.44848 -14.17713 -13.87436 -13.84555 -13.47851 -13.44492 -13.17047 -13.05634 -12.93626 -12.59684 -12.24103 -12.07657 -11.93998 -11.78493 -11.74136 -11.72023 -11.39344 -11.22277 -11.13693 -11.06987 -10.86814 -10.68560 -10.55236 -9.62137 -9.55535 -9.51124 -9.01184 -8.86308 -8.40537 -7.14039 -6.67117 -4.21789 1.02572 1.94790 2.11490 2.34916 2.57561 3.00880 3.03266 3.05308 3.08676 3.56117 3.80789 4.41502 4.48736 4.56716 4.78498 4.89255 4.90917 4.98006 5.01399 5.04803 5.11049 5.23616 5.47767 5.50248 5.54172 5.55083 5.63447 5.68982 5.86972 5.98118 6.04681 6.09564 6.20673 6.29169 6.41832 6.45003 6.51133 6.58066 6.76694 6.89094 7.10390 7.19552 7.23003 7.30109 7.61557 7.64816 7.78281 8.22927 8.77660 9.44349 10.49440 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021119 B = 0.002253 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.472722 B =12427.441009 C =13343.954100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.149 3.851 3 C -0.167 4.167 4 N -0.601 5.601 5 C 0.121 3.879 6 C 0.452 3.548 7 O -0.497 6.497 8 O -0.518 6.518 9 C 0.569 3.431 10 O -0.539 6.539 11 C -0.291 4.291 12 C 0.045 3.955 13 C -0.200 4.200 14 C -0.042 4.042 15 C -0.199 4.199 16 C 0.167 3.833 17 O -0.161 6.161 18 C -0.393 4.393 19 H 0.098 0.902 20 C 0.042 3.958 21 N -0.851 5.851 22 Si 0.945 3.055 23 H -0.271 1.271 24 H -0.275 1.275 25 H -0.265 1.265 26 C -0.242 4.242 27 C -0.033 4.033 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.127 0.873 37 H 0.411 0.589 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.274 0.726 43 H 0.132 0.868 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.487 5.471 -20.931 21.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.046 3.954 3 C -0.225 4.225 4 N -0.334 5.334 5 C -0.005 4.005 6 C 0.291 3.709 7 O -0.383 6.383 8 O -0.330 6.330 9 C 0.363 3.637 10 O -0.419 6.419 11 C -0.312 4.312 12 C 0.026 3.974 13 C -0.201 4.201 14 C -0.060 4.060 15 C -0.218 4.218 16 C 0.111 3.889 17 O -0.062 6.062 18 C -0.469 4.469 19 H 0.115 0.885 20 C -0.165 4.165 21 N -0.484 5.484 22 Si 0.769 3.231 23 H -0.196 1.196 24 H -0.200 1.200 25 H -0.189 1.189 26 C -0.261 4.261 27 C -0.052 4.052 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.271 0.729 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.084 0.916 43 H 0.149 0.851 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.688 5.978 -20.607 21.467 hybrid contribution -0.623 -0.542 0.690 1.076 sum -1.311 5.436 -19.916 20.686 Atomic orbital electron populations 1.22215 0.94448 1.03305 1.02862 1.21012 0.95264 0.93069 0.86006 1.22214 1.00630 0.95858 1.03843 1.47649 1.47919 1.30988 1.06887 1.21030 0.91197 0.81252 1.06977 1.24328 0.87819 0.86122 0.72629 1.90756 1.15749 1.87264 1.44527 1.84514 1.45768 1.17757 1.84991 1.18298 0.78586 0.83947 0.82827 1.90716 1.38550 1.26510 1.86105 1.22481 1.10560 1.05622 0.92565 1.22293 0.90772 0.93455 0.90929 1.18455 1.07429 1.01631 0.92622 1.20841 0.94839 0.93392 0.96959 1.20140 1.06724 1.04635 0.90319 1.19606 0.91445 0.89577 0.88290 1.83902 1.63983 1.45679 1.12657 1.21484 1.28694 1.16482 0.80197 0.88511 1.25403 0.95882 0.95796 0.99387 1.70014 1.29430 1.19389 1.29564 0.85642 0.78628 0.79337 0.79502 1.19619 1.20024 1.18926 1.21100 1.05144 1.00340 0.99545 1.20987 0.95874 0.96912 0.91389 0.90181 0.92324 0.91886 0.90288 0.92828 0.91875 0.90210 0.86135 0.85551 0.72944 0.86307 0.85835 0.86702 0.86109 0.91569 0.85087 0.86777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 8.95 37.16 0.33 -1.58 16 2 C 0.15 1.45 3.26 -67.93 -0.22 1.23 16 3 C -0.17 -1.54 9.24 37.16 0.34 -1.20 16 4 N -0.60 -6.50 1.91 -169.16 -0.32 -6.82 16 5 C 0.12 0.94 5.58 -5.19 -0.03 0.91 16 6 C 0.45 4.30 8.38 36.01 0.30 4.61 16 7 O -0.50 -6.67 16.67 -18.75 -0.31 -6.98 16 8 O -0.52 -3.71 13.42 -39.25 -0.53 -4.24 16 9 C 0.57 7.99 6.99 -13.04 -0.09 7.90 16 10 O -0.54 -8.90 12.51 5.17 0.06 -8.84 16 11 C -0.29 -4.05 8.59 -37.50 -0.32 -4.38 16 12 C 0.05 0.69 9.45 -37.19 -0.35 0.34 16 13 C -0.20 -3.42 5.87 -105.03 -0.62 -4.04 16 14 C -0.04 -0.72 9.40 -39.14 -0.37 -1.08 16 15 C -0.20 -3.95 9.97 -39.46 -0.39 -4.35 16 16 C 0.17 3.83 6.66 -38.89 -0.26 3.57 16 17 O -0.16 -4.35 9.74 0.74 0.01 -4.35 16 18 C -0.39 -10.39 9.48 30.91 0.29 -10.10 16 19 H 0.10 2.35 5.18 -52.49 -0.27 2.08 16 20 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 21 N -0.85 -23.70 13.67 55.48 0.76 -22.95 16 22 Si 0.95 19.43 29.55 -169.99 -5.02 14.41 16 23 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 24 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 26 C -0.24 -4.99 9.14 -39.47 -0.36 -5.35 16 27 C -0.03 -0.59 9.78 -39.15 -0.38 -0.97 16 28 H 0.08 1.09 6.18 -51.93 -0.32 0.77 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.81 7.62 -51.93 -0.40 0.41 16 31 H 0.08 0.59 7.84 -51.93 -0.41 0.18 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.96 6.24 -51.93 -0.32 0.64 16 35 H 0.12 0.53 7.96 -51.93 -0.41 0.11 16 36 H 0.13 0.83 6.27 -51.93 -0.33 0.51 16 37 H 0.41 1.61 9.10 45.56 0.41 2.02 16 38 H 0.12 1.44 4.29 -52.49 -0.23 1.21 16 39 H 0.12 1.87 7.53 -52.49 -0.40 1.47 16 40 H 0.12 1.60 6.16 -52.49 -0.32 1.28 16 41 H 0.12 2.28 8.06 -52.49 -0.42 1.85 16 42 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.13 2.67 5.61 -52.49 -0.29 2.38 16 44 H 0.11 1.72 8.06 -52.48 -0.42 1.29 16 LS Contribution 373.90 15.07 5.63 5.63 Total: -1.00 -33.19 373.90 -6.47 -39.66 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -4.53 Total: 7.98 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -2.22 Total: -13.50 kcal Atomic # 7 Polarization: -30.21 SS G_CDS: 0.44 Total: -29.77 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.77 Total: -24.41 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.19 -6.47 -39.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268893035.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.060 kcal (2) G-P(sol) polarization free energy of solvation -33.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds