Wall clock time and date at job start Tue Mar 31 2020 16:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46888 * 2 1 4 4 N 1.46498 * 109.46991 * 120.00161 * 2 1 3 5 5 C 1.46501 * 119.99482 * 124.83900 * 4 2 1 6 6 C 1.50700 * 109.47054 * 269.99506 * 5 4 2 7 7 O 1.20821 * 120.00152 * 0.02562 * 6 5 4 8 8 O 1.34227 * 119.99930 * 180.02562 * 6 5 4 9 9 C 1.34770 * 120.00076 * 304.83442 * 4 2 1 10 10 O 1.21719 * 120.00249 * 354.62254 * 9 4 2 11 11 C 1.46261 * 119.99865 * 174.62337 * 9 4 2 12 12 C 1.35025 * 119.99717 * 184.97556 * 11 9 4 13 13 C 1.46963 * 119.99757 * 180.02562 * 12 11 9 14 14 C 1.40031 * 120.09813 * 359.72506 * 13 12 11 15 15 C 1.37599 * 119.89203 * 179.69820 * 14 13 12 16 16 C 1.39181 * 120.10273 * 0.60009 * 15 14 13 17 17 O 1.35567 * 119.89558 * 179.70013 * 16 15 14 18 18 C 1.34783 * 116.99546 * 174.61837 * 17 16 15 19 19 H 1.07995 * 120.00070 * 5.03160 * 18 17 16 20 20 C 1.38726 * 119.99853 * 185.03218 * 18 17 16 21 21 N 1.31510 * 119.99648 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00167 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47217 * 90.00006 * 22 20 18 24 24 H 1.48495 * 109.47263 * 210.00380 * 22 20 18 25 25 H 1.48508 * 109.46853 * 330.00264 * 22 20 18 26 26 C 1.39170 * 120.20183 * 359.67514 * 16 15 14 27 27 C 1.37598 * 120.10195 * 0.02562 * 26 16 15 28 28 H 1.09001 * 109.46561 * 305.17281 * 1 2 3 29 29 H 1.08994 * 109.47441 * 65.16788 * 1 2 3 30 30 H 1.08992 * 109.47029 * 185.17298 * 1 2 3 31 31 H 1.08998 * 109.46385 * 240.00221 * 2 1 3 32 32 H 1.09006 * 109.46754 * 184.93656 * 3 2 1 33 33 H 1.09000 * 109.47488 * 304.93387 * 3 2 1 34 34 H 1.08996 * 109.47117 * 64.93770 * 3 2 1 35 35 H 1.08996 * 109.47317 * 29.99922 * 5 4 2 36 36 H 1.08998 * 109.46998 * 149.99785 * 5 4 2 37 37 H 0.96700 * 117.00011 * 179.97438 * 8 6 5 38 38 H 1.07999 * 119.99715 * 4.98059 * 11 9 4 39 39 H 1.07995 * 119.99885 * 359.97438 * 12 11 9 40 40 H 1.07995 * 120.04979 * 0.02562 * 14 13 12 41 41 H 1.07999 * 119.94430 * 180.27727 * 15 14 13 42 42 H 0.96998 * 119.99483 * 180.02562 * 21 20 18 43 43 H 1.08002 * 119.94886 * 179.97438 * 26 16 15 44 44 H 1.08004 * 120.05035 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.9459 -1.8170 1.0642 6 6 2.1644 -3.1004 0.9498 7 8 0.9567 -3.0767 0.9754 8 8 2.8101 -4.2700 0.8195 9 6 1.6144 -0.2898 2.4178 10 8 0.9229 0.7051 2.5341 11 6 2.0070 -1.0503 3.6039 12 6 1.5210 -0.7085 4.8164 13 6 1.9159 -1.4723 6.0082 14 6 2.7915 -2.5585 5.8879 15 6 3.1633 -3.2668 7.0074 16 6 2.6608 -2.9129 8.2562 17 8 3.0252 -3.6175 9.3556 18 6 2.5942 -3.1582 10.5472 19 1 1.9211 -2.3148 10.5894 20 6 3.0154 -3.7689 11.7194 21 7 3.8356 -4.7956 11.6679 22 14 2.4188 -3.1319 13.3710 23 1 1.1657 -3.8334 13.7487 24 1 3.4570 -3.3829 14.4027 25 1 2.1595 -1.6729 13.2744 26 6 1.7858 -1.8378 8.3797 27 6 1.4133 -1.1198 7.2666 28 1 -0.3632 0.5920 0.8401 29 1 -0.3634 0.4315 -0.9326 30 1 -0.3633 -1.0234 0.0927 31 1 1.8933 -0.5138 -0.8900 32 1 3.1265 1.4438 -0.0884 33 1 1.6063 1.9813 -0.8425 34 1 1.7507 1.9301 0.9309 35 1 3.5562 -1.6824 0.1712 36 1 3.5908 -1.8612 1.9418 37 1 2.2661 -5.0664 0.7501 38 1 2.6856 -1.8852 3.5098 39 1 0.8429 0.1267 4.9104 40 1 3.1784 -2.8364 4.9187 41 1 3.8421 -4.1019 6.9162 42 1 4.1298 -5.2228 12.4876 43 1 1.3980 -1.5670 9.3507 44 1 0.7345 -0.2853 7.3635 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268893035.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:39 Heat of formation + Delta-G solvation = -126.856961 kcal Electronic energy + Delta-G solvation = -27757.778108 eV Core-core repulsion = 23640.842171 eV Total energy + Delta-G solvation = -4116.935937 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.72263 -40.86556 -40.52679 -38.57227 -37.32520 -36.75896 -34.93642 -34.26815 -33.37572 -31.98848 -29.78538 -28.89028 -28.04501 -27.52026 -25.25960 -23.80452 -23.11824 -22.80348 -21.23316 -20.10623 -19.31826 -19.09646 -18.85702 -18.23142 -17.62579 -17.30161 -16.61822 -16.46677 -16.34519 -15.94795 -15.67097 -15.59728 -15.46665 -14.88807 -14.75696 -14.57682 -14.29213 -14.12121 -13.86590 -13.63655 -13.58003 -13.35521 -13.11737 -13.00076 -12.86951 -12.70646 -12.59112 -12.47003 -12.27224 -12.21593 -12.13596 -11.93216 -11.66910 -11.23083 -11.11932 -10.62948 -10.58159 -9.91368 -9.87605 -8.70612 -8.53014 -6.19010 -0.28536 0.56604 1.09386 1.24875 1.35639 1.45016 1.52628 1.68396 2.14758 2.22180 2.48901 2.85250 3.16303 3.39829 3.49329 3.86779 3.95046 4.01390 4.06417 4.15137 4.23123 4.26998 4.34327 4.37683 4.45416 4.47796 4.63625 4.73259 4.80356 4.91049 4.92399 4.99559 5.01137 5.14608 5.16925 5.30319 5.35529 5.41727 5.54994 5.62041 5.66728 5.69251 5.77895 5.96374 6.07876 6.29899 6.91383 7.02527 7.17601 7.67935 8.68966 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021119 B = 0.002253 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.472722 B =12427.441009 C =13343.954100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.144 3.856 3 C -0.161 4.161 4 N -0.594 5.594 5 C 0.112 3.888 6 C 0.457 3.543 7 O -0.544 6.544 8 O -0.511 6.511 9 C 0.559 3.441 10 O -0.568 6.568 11 C -0.257 4.257 12 C 0.021 3.979 13 C -0.173 4.173 14 C -0.037 4.037 15 C -0.205 4.205 16 C 0.131 3.869 17 O -0.218 6.218 18 C -0.417 4.417 19 H 0.105 0.895 20 C -0.018 4.018 21 N -0.913 5.913 22 Si 1.018 2.982 23 H -0.263 1.263 24 H -0.270 1.270 25 H -0.253 1.253 26 C -0.249 4.249 27 C -0.039 4.039 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.165 0.835 36 H 0.144 0.856 37 H 0.426 0.574 38 H 0.144 0.856 39 H 0.126 0.874 40 H 0.156 0.844 41 H 0.124 0.876 42 H 0.275 0.725 43 H 0.125 0.875 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.153 6.829 -24.506 25.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.042 3.958 3 C -0.219 4.219 4 N -0.326 5.326 5 C -0.012 4.012 6 C 0.299 3.701 7 O -0.433 6.433 8 O -0.324 6.324 9 C 0.352 3.648 10 O -0.449 6.449 11 C -0.278 4.278 12 C 0.001 3.999 13 C -0.174 4.174 14 C -0.055 4.055 15 C -0.224 4.224 16 C 0.079 3.921 17 O -0.123 6.123 18 C -0.493 4.493 19 H 0.123 0.877 20 C -0.217 4.217 21 N -0.549 5.549 22 Si 0.837 3.163 23 H -0.188 1.188 24 H -0.195 1.195 25 H -0.176 1.176 26 C -0.268 4.268 27 C -0.057 4.057 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.131 0.869 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.182 0.818 36 H 0.162 0.838 37 H 0.288 0.712 38 H 0.161 0.839 39 H 0.143 0.857 40 H 0.173 0.827 41 H 0.142 0.858 42 H 0.084 0.916 43 H 0.143 0.857 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.347 7.341 -24.272 25.360 hybrid contribution -0.797 -0.798 1.106 1.580 sum -1.144 6.543 -23.166 24.099 Atomic orbital electron populations 1.22145 0.95961 1.01530 1.02725 1.21229 0.94125 0.93861 0.86605 1.22139 1.01733 0.95249 1.02785 1.47685 1.47408 1.31433 1.06120 1.21487 0.90550 0.79240 1.09968 1.24609 0.87180 0.87055 0.71304 1.90767 1.17729 1.87915 1.46910 1.84484 1.45714 1.17935 1.84223 1.18412 0.78636 0.83745 0.83988 1.90727 1.39664 1.27736 1.86779 1.22845 1.08208 1.04629 0.92097 1.22189 0.92625 0.94373 0.90695 1.18775 1.05110 1.00488 0.93003 1.21222 0.94121 0.92478 0.97680 1.20405 1.06714 1.05114 0.90160 1.20175 0.92665 0.90711 0.88543 1.83885 1.66890 1.47988 1.13513 1.21896 1.29360 1.17165 0.80861 0.87732 1.26603 0.95972 0.95934 1.03152 1.70145 1.32464 1.21851 1.30483 0.84592 0.78193 0.79206 0.74310 1.18809 1.19496 1.17623 1.21201 1.04931 1.00213 1.00422 1.21306 0.96215 0.97370 0.90811 0.93153 0.90187 0.93808 0.86879 0.91166 0.90340 0.93414 0.81787 0.83819 0.71249 0.83891 0.85653 0.82695 0.85752 0.91557 0.85699 0.83845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.41 8.95 71.98 0.64 -2.77 16 2 C 0.14 2.28 3.26 44.99 0.15 2.42 16 3 C -0.16 -2.44 9.24 71.98 0.67 -1.78 16 4 N -0.59 -10.62 1.91 -807.31 -1.54 -12.16 16 5 C 0.11 1.15 5.58 85.63 0.48 1.63 16 6 C 0.46 6.89 8.38 71.24 0.60 7.48 16 7 O -0.54 -13.20 16.67 21.98 0.37 -12.83 16 8 O -0.51 -5.24 13.42 -51.39 -0.69 -5.93 16 9 C 0.56 14.09 6.99 86.33 0.60 14.69 16 10 O -0.57 -17.91 12.51 -4.41 -0.06 -17.97 16 11 C -0.26 -6.18 8.59 23.62 0.20 -5.98 16 12 C 0.02 0.58 9.45 23.82 0.23 0.80 16 13 C -0.17 -5.47 5.87 -20.13 -0.12 -5.59 16 14 C -0.04 -1.17 9.40 22.55 0.21 -0.96 16 15 C -0.20 -8.12 9.97 22.35 0.22 -7.89 16 16 C 0.13 6.23 6.66 22.72 0.15 6.39 16 17 O -0.22 -12.55 9.74 -20.25 -0.20 -12.75 16 18 C -0.42 -23.40 9.48 67.94 0.64 -22.75 16 19 H 0.11 5.37 5.18 -2.91 -0.02 5.35 16 20 C -0.02 -0.97 5.49 84.86 0.47 -0.50 16 21 N -0.91 -54.09 13.67 21.62 0.30 -53.80 16 22 Si 1.02 41.39 29.55 68.60 2.03 43.42 16 23 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 24 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 25 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 26 C -0.25 -10.44 9.14 22.34 0.20 -10.23 16 27 C -0.04 -1.34 9.78 22.55 0.22 -1.12 16 28 H 0.05 1.34 6.18 -2.39 -0.01 1.33 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.04 1.06 7.62 -2.39 -0.02 1.04 16 31 H 0.11 1.09 7.84 -2.39 -0.02 1.07 16 32 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.05 1.06 6.24 -2.39 -0.01 1.05 16 35 H 0.16 0.35 7.96 -2.39 -0.02 0.33 16 36 H 0.14 1.03 6.27 -2.39 -0.01 1.02 16 37 H 0.43 1.91 9.10 -74.06 -0.67 1.23 16 38 H 0.14 2.68 4.29 -2.91 -0.01 2.67 16 39 H 0.13 3.51 7.53 -2.91 -0.02 3.49 16 40 H 0.16 3.56 6.16 -2.91 -0.02 3.54 16 41 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 42 H 0.28 14.91 8.31 -92.71 -0.77 14.14 16 43 H 0.13 5.30 5.61 -2.91 -0.02 5.29 16 44 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -79.33 373.90 6.16 -73.17 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.39 Total: 24.99 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: 5.57 Total: -26.16 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: -1.25 Total: -65.95 kcal Atomic # 8 Polarization: -48.90 SS G_CDS: -0.58 Total: -49.48 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -79.33 6.16 -73.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268893035.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.684 kcal (2) G-P(sol) polarization free energy of solvation -79.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds