Wall clock time and date at job start Tue Mar 31 2020 18:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 117.00081 * 2 1 4 4 O 1.20821 * 119.99678 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00090 * 179.97438 * 3 2 1 6 6 H 1.08997 * 110.29931 * 57.82372 * 5 3 2 7 7 C 1.54393 * 110.33953 * 295.53760 * 5 3 2 8 8 N 1.48146 * 104.61347 * 217.25839 * 7 5 3 9 9 C 1.34776 * 127.84096 * 219.60158 * 8 7 5 10 10 O 1.21587 * 120.00320 * 174.81853 * 9 8 7 11 11 C 1.47535 * 119.99564 * 354.82541 * 9 8 7 12 12 C 1.39667 * 120.19893 * 325.03225 * 11 9 8 13 13 C 1.37827 * 119.91702 * 179.74959 * 12 11 9 14 14 C 1.38567 * 120.32686 * 0.53503 * 13 12 11 15 15 C 1.38025 * 120.40010 * 359.73902 * 14 13 12 16 16 C 1.38829 * 120.07425 * 359.97438 * 15 14 13 17 17 O 1.35516 * 120.16510 * 179.97438 * 16 15 14 18 18 C 1.34810 * 117.00158 * 6.01767 * 17 16 15 19 19 H 1.08009 * 119.99965 * 5.53988 * 18 17 16 20 20 C 1.38696 * 120.00699 * 185.54021 * 18 17 16 21 21 N 1.31519 * 119.99708 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00529 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47078 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47190 * 119.99919 * 22 20 18 25 25 H 1.48508 * 109.47126 * 240.00324 * 22 20 18 26 26 C 1.48146 * 104.32170 * 39.59189 * 8 7 5 27 27 C 1.54285 * 110.34206 * 180.02562 * 5 3 2 28 28 H 1.09002 * 110.34094 * 359.97438 * 27 5 3 29 29 C 1.53004 * 110.34052 * 237.84653 * 27 5 3 30 30 H 1.08997 * 109.46837 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46915 * 60.00188 * 1 2 3 32 32 H 1.08996 * 109.47440 * 300.00001 * 1 2 3 33 33 H 1.08993 * 110.40914 * 336.04995 * 7 5 3 34 34 H 1.08998 * 110.40232 * 98.48071 * 7 5 3 35 35 H 1.07998 * 120.03867 * 0.02562 * 12 11 9 36 36 H 1.08002 * 119.83782 * 180.25530 * 13 12 11 37 37 H 1.08000 * 119.80408 * 179.76257 * 14 13 12 38 38 H 1.08001 * 119.96557 * 179.97438 * 15 14 13 39 39 H 0.96997 * 120.00166 * 179.97438 * 21 20 18 40 40 H 1.09003 * 110.40836 * 201.62532 * 26 8 7 41 41 H 1.08996 * 110.51209 * 79.24942 * 26 8 7 42 42 H 1.09003 * 109.47142 * 60.00190 * 29 27 5 43 43 H 1.09002 * 109.47084 * 179.97438 * 29 27 5 44 44 H 1.08997 * 109.46899 * 300.00259 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9728 0.7509 -0.8644 7 6 4.1344 0.6800 1.3072 8 7 5.2904 1.5447 1.6400 9 6 6.4875 1.1710 2.1335 10 8 7.3733 1.9930 2.2677 11 6 6.7232 -0.2357 2.5109 12 6 5.6898 -0.9985 3.0594 13 6 5.9149 -2.3136 3.4051 14 6 7.1656 -2.8810 3.2214 15 6 8.1979 -2.1378 2.6856 16 6 7.9880 -0.8134 2.3261 17 8 9.0004 -0.0819 1.8004 18 6 10.1516 -0.7314 1.5357 19 1 10.2077 -1.8030 1.6587 20 6 11.2642 -0.0238 1.1054 21 7 11.1960 1.2810 0.9552 22 14 12.8596 -0.9239 0.7394 23 1 12.6762 -2.3767 0.9861 24 1 13.2363 -0.7061 -0.6804 25 1 13.9349 -0.4044 1.6222 26 6 4.8319 2.9135 1.3070 27 6 4.0263 2.7476 0.0011 28 1 3.1636 3.4139 0.0005 29 6 4.9140 3.0280 -1.2131 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5138 0.8899 33 1 3.3877 0.7218 2.1000 34 1 4.4620 -0.3470 1.1461 35 1 4.7143 -0.5596 3.2085 36 1 5.1137 -2.9035 3.8254 37 1 7.3337 -3.9112 3.4987 38 1 9.1701 -2.5871 2.5459 39 1 11.9741 1.7759 0.6547 40 1 5.6858 3.5717 1.1459 41 1 4.1947 3.3062 2.0993 42 1 4.3530 2.8311 -2.1266 43 1 5.2301 4.0711 -1.1989 44 1 5.7910 2.3816 -1.1789 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279928477.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:44 Heat of formation + Delta-G solvation = -108.052289 kcal Electronic energy + Delta-G solvation = -29155.856700 eV Core-core repulsion = 25039.736195 eV Total energy + Delta-G solvation = -4116.120506 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.04127 -39.76127 -38.68717 -37.16263 -36.41211 -36.36806 -32.68932 -32.36559 -30.68214 -30.31944 -28.97759 -27.74775 -26.50653 -25.36977 -24.54629 -22.66452 -21.68892 -21.49221 -19.73540 -19.28319 -18.10207 -17.91615 -17.27897 -16.87695 -16.69521 -16.24141 -15.36249 -15.15820 -14.69957 -14.51799 -14.18845 -14.04523 -13.80180 -13.70212 -13.43196 -13.35380 -13.10094 -12.99622 -12.62774 -12.61178 -12.31439 -12.04611 -11.87476 -11.72472 -11.38033 -11.20180 -11.08721 -11.05481 -10.99247 -10.95473 -10.78105 -10.68766 -10.60334 -10.45095 -9.63485 -9.02125 -8.90610 -8.38660 -8.28336 -7.34554 -6.47679 -4.08092 1.73459 1.95052 2.28480 2.43280 3.10233 3.11163 3.16997 3.32792 3.56699 3.91276 4.22233 4.40564 4.52455 4.63761 4.84151 4.91026 4.94183 5.04382 5.08520 5.13193 5.18254 5.25792 5.30195 5.48863 5.51842 5.61242 5.67707 5.70983 5.81135 5.86080 5.95362 5.99294 6.05014 6.13043 6.17395 6.30569 6.51262 6.54729 6.71797 6.92788 7.03901 7.22880 7.26660 7.50343 7.66345 7.89134 8.00183 8.90467 8.94395 9.63075 10.66951 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014380 B = 0.003502 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.676558 B = 7993.042694 C = 9114.294629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.354 6.354 3 C 0.474 3.526 4 O -0.504 6.504 5 C -0.098 4.098 6 H 0.121 0.879 7 C 0.118 3.882 8 N -0.628 5.628 9 C 0.589 3.411 10 O -0.503 6.503 11 C -0.222 4.222 12 C -0.042 4.042 13 C -0.227 4.227 14 C -0.052 4.052 15 C -0.236 4.236 16 C 0.191 3.809 17 O -0.138 6.138 18 C -0.401 4.401 19 H 0.095 0.905 20 C 0.044 3.956 21 N -0.837 5.837 22 Si 0.941 3.059 23 H -0.265 1.265 24 H -0.275 1.275 25 H -0.275 1.275 26 C 0.109 3.891 27 C -0.099 4.099 28 H 0.106 0.894 29 C -0.144 4.144 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.132 0.868 39 H 0.271 0.729 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.865 -3.802 -2.139 18.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.270 6.270 3 C 0.316 3.684 4 O -0.391 6.391 5 C -0.118 4.118 6 H 0.139 0.861 7 C -0.006 4.006 8 N -0.366 5.366 9 C 0.381 3.619 10 O -0.376 6.376 11 C -0.226 4.226 12 C -0.061 4.061 13 C -0.246 4.246 14 C -0.070 4.070 15 C -0.255 4.255 16 C 0.132 3.868 17 O -0.037 6.037 18 C -0.477 4.477 19 H 0.112 0.888 20 C -0.163 4.163 21 N -0.469 5.469 22 Si 0.765 3.235 23 H -0.190 1.190 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.014 4.014 27 C -0.118 4.118 28 H 0.124 0.876 29 C -0.201 4.201 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.150 0.850 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.237 -2.611 -2.154 17.566 hybrid contribution 0.423 -0.576 -0.175 0.735 sum -16.814 -3.187 -2.329 17.271 Atomic orbital electron populations 1.23287 0.76334 1.03793 1.02518 1.86548 1.23404 1.33208 1.83890 1.23535 0.91723 0.81318 0.71777 1.90637 1.66877 1.36335 1.45282 1.22198 0.86993 1.00104 1.02536 0.86078 1.22245 0.88570 0.96541 0.93271 1.48847 1.13268 1.07625 1.66819 1.17876 0.79231 0.88336 0.76449 1.90884 1.40884 1.53143 1.52679 1.18687 0.93442 0.94130 1.16361 1.20872 0.96343 0.93511 0.95350 1.20476 0.97598 0.95656 1.10890 1.20904 0.92671 0.98361 0.95072 1.21149 1.00732 0.94846 1.08769 1.19212 0.88007 0.90018 0.89575 1.84097 1.19097 1.35188 1.65313 1.21492 0.87012 0.92744 1.46470 0.88790 1.25381 0.98858 0.95704 0.96390 1.70112 1.30515 1.06073 1.40220 0.85654 0.80178 0.79151 0.78475 1.18951 1.20022 1.20000 1.22316 0.98506 0.85762 0.94790 1.22218 0.99644 0.93599 0.96362 0.87607 1.21849 0.99655 1.02596 0.96008 0.87992 0.91941 0.91838 0.91151 0.88175 0.86653 0.87177 0.87139 0.85025 0.91859 0.89134 0.91415 0.92591 0.91771 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.59 10.57 -39.26 -0.41 -4.01 16 3 C 0.47 5.42 7.12 36.01 0.26 5.68 16 4 O -0.50 -6.73 15.01 -18.75 -0.28 -7.01 16 5 C -0.10 -1.13 3.21 -90.37 -0.29 -1.42 16 6 H 0.12 1.30 7.71 -51.93 -0.40 0.90 16 7 C 0.12 1.51 4.74 -2.41 -0.01 1.49 16 8 N -0.63 -10.54 3.31 -170.57 -0.56 -11.11 16 9 C 0.59 13.01 7.44 -12.47 -0.09 12.91 16 10 O -0.50 -13.64 16.18 -12.57 -0.20 -13.84 16 11 C -0.22 -4.76 5.51 -104.81 -0.58 -5.33 16 12 C -0.04 -0.72 7.90 -39.20 -0.31 -1.03 16 13 C -0.23 -3.63 10.02 -39.61 -0.40 -4.03 16 14 C -0.05 -0.89 10.03 -39.54 -0.40 -1.28 16 15 C -0.24 -4.96 9.12 -39.44 -0.36 -5.32 16 16 C 0.19 4.65 6.62 -38.60 -0.26 4.39 16 17 O -0.14 -4.01 8.39 -17.04 -0.14 -4.15 16 18 C -0.40 -11.20 9.44 30.90 0.29 -10.90 16 19 H 0.09 2.38 5.31 -52.48 -0.28 2.10 16 20 C 0.04 1.21 5.49 -17.52 -0.10 1.12 16 21 N -0.84 -25.00 13.67 55.48 0.76 -24.24 16 22 Si 0.94 20.32 29.55 -169.99 -5.02 15.30 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 26 C 0.11 1.58 6.61 -2.44 -0.02 1.56 16 27 C -0.10 -1.20 3.24 -89.25 -0.29 -1.49 16 28 H 0.11 1.25 6.47 -51.93 -0.34 0.92 16 29 C -0.14 -1.74 8.91 37.16 0.33 -1.40 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 32 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 33 H 0.07 0.78 7.60 -51.93 -0.39 0.39 16 34 H 0.10 1.28 6.39 -51.93 -0.33 0.95 16 35 H 0.12 1.62 6.19 -52.49 -0.32 1.30 16 36 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 37 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 38 H 0.13 2.75 5.72 -52.49 -0.30 2.45 16 39 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.09 1.46 7.57 -51.93 -0.39 1.07 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 368.33 15.07 5.55 5.55 Total: -1.00 -35.22 368.33 -7.17 -42.38 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.70 Total: 4.88 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -1.15 Total: -3.75 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.19 Total: -35.35 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -1.04 Total: -29.02 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.22 -7.17 -42.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279928477.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.671 kcal (2) G-P(sol) polarization free energy of solvation -35.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds