Wall clock time and date at job start Tue Mar 31 2020 18:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 117.00081 * 2 1 4 4 O 1.20821 * 119.99678 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00090 * 179.97438 * 3 2 1 6 6 H 1.08997 * 110.29931 * 57.82372 * 5 3 2 7 7 C 1.54393 * 110.33953 * 295.53760 * 5 3 2 8 8 N 1.48146 * 104.61347 * 217.25839 * 7 5 3 9 9 C 1.34776 * 127.84096 * 219.60158 * 8 7 5 10 10 O 1.21587 * 120.00320 * 174.81853 * 9 8 7 11 11 C 1.47535 * 119.99564 * 354.82541 * 9 8 7 12 12 C 1.39667 * 120.19893 * 325.03225 * 11 9 8 13 13 C 1.37827 * 119.91702 * 179.74959 * 12 11 9 14 14 C 1.38567 * 120.32686 * 0.53503 * 13 12 11 15 15 C 1.38025 * 120.40010 * 359.73902 * 14 13 12 16 16 C 1.38829 * 120.07425 * 359.97438 * 15 14 13 17 17 O 1.35516 * 120.16510 * 179.97438 * 16 15 14 18 18 C 1.34810 * 117.00158 * 6.01767 * 17 16 15 19 19 H 1.08009 * 119.99965 * 5.53988 * 18 17 16 20 20 C 1.38696 * 120.00699 * 185.54021 * 18 17 16 21 21 N 1.31519 * 119.99708 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00529 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47078 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47190 * 119.99919 * 22 20 18 25 25 H 1.48508 * 109.47126 * 240.00324 * 22 20 18 26 26 C 1.48146 * 104.32170 * 39.59189 * 8 7 5 27 27 C 1.54285 * 110.34206 * 180.02562 * 5 3 2 28 28 H 1.09002 * 110.34094 * 359.97438 * 27 5 3 29 29 C 1.53004 * 110.34052 * 237.84653 * 27 5 3 30 30 H 1.08997 * 109.46837 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46915 * 60.00188 * 1 2 3 32 32 H 1.08996 * 109.47440 * 300.00001 * 1 2 3 33 33 H 1.08993 * 110.40914 * 336.04995 * 7 5 3 34 34 H 1.08998 * 110.40232 * 98.48071 * 7 5 3 35 35 H 1.07998 * 120.03867 * 0.02562 * 12 11 9 36 36 H 1.08002 * 119.83782 * 180.25530 * 13 12 11 37 37 H 1.08000 * 119.80408 * 179.76257 * 14 13 12 38 38 H 1.08001 * 119.96557 * 179.97438 * 15 14 13 39 39 H 0.96997 * 120.00166 * 179.97438 * 21 20 18 40 40 H 1.09003 * 110.40836 * 201.62532 * 26 8 7 41 41 H 1.08996 * 110.51209 * 79.24942 * 26 8 7 42 42 H 1.09003 * 109.47142 * 60.00190 * 29 27 5 43 43 H 1.09002 * 109.47084 * 179.97438 * 29 27 5 44 44 H 1.08997 * 109.46899 * 300.00259 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9728 0.7509 -0.8644 7 6 4.1344 0.6800 1.3072 8 7 5.2904 1.5447 1.6400 9 6 6.4875 1.1710 2.1335 10 8 7.3733 1.9930 2.2677 11 6 6.7232 -0.2357 2.5109 12 6 5.6898 -0.9985 3.0594 13 6 5.9149 -2.3136 3.4051 14 6 7.1656 -2.8810 3.2214 15 6 8.1979 -2.1378 2.6856 16 6 7.9880 -0.8134 2.3261 17 8 9.0004 -0.0819 1.8004 18 6 10.1516 -0.7314 1.5357 19 1 10.2077 -1.8030 1.6587 20 6 11.2642 -0.0238 1.1054 21 7 11.1960 1.2810 0.9552 22 14 12.8596 -0.9239 0.7394 23 1 12.6762 -2.3767 0.9861 24 1 13.2363 -0.7061 -0.6804 25 1 13.9349 -0.4044 1.6222 26 6 4.8319 2.9135 1.3070 27 6 4.0263 2.7476 0.0011 28 1 3.1636 3.4139 0.0005 29 6 4.9140 3.0280 -1.2131 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5138 0.8899 33 1 3.3877 0.7218 2.1000 34 1 4.4620 -0.3470 1.1461 35 1 4.7143 -0.5596 3.2085 36 1 5.1137 -2.9035 3.8254 37 1 7.3337 -3.9112 3.4987 38 1 9.1701 -2.5871 2.5459 39 1 11.9741 1.7759 0.6547 40 1 5.6858 3.5717 1.1459 41 1 4.1947 3.3062 2.0993 42 1 4.3530 2.8311 -2.1266 43 1 5.2301 4.0711 -1.1989 44 1 5.7910 2.3816 -1.1789 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279928477.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:43 Heat of formation + Delta-G solvation = -130.980629 kcal Electronic energy + Delta-G solvation = -29156.850948 eV Core-core repulsion = 25039.736195 eV Total energy + Delta-G solvation = -4117.114753 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.05157 -41.22910 -40.14509 -38.57542 -38.04058 -37.40734 -34.34208 -34.01951 -31.97338 -31.55002 -30.59361 -28.42515 -27.85519 -27.24140 -25.73486 -24.01778 -23.18851 -22.63622 -20.95133 -20.60477 -19.88669 -18.87213 -18.79995 -18.10019 -17.70166 -17.49405 -16.80857 -16.60500 -16.33147 -15.91767 -15.59488 -15.46097 -15.26260 -14.97160 -14.78229 -14.50619 -14.36461 -14.28326 -14.11491 -13.74438 -13.55507 -13.37871 -13.13779 -12.97365 -12.86156 -12.68086 -12.54193 -12.35080 -12.14565 -12.09227 -11.99721 -11.82240 -11.77067 -11.59144 -11.42157 -10.84496 -10.73571 -9.88542 -9.74366 -9.03550 -8.45801 -6.16705 0.17736 0.72221 1.05090 1.33067 1.43312 1.52796 1.57893 1.90706 2.03913 2.15676 2.84092 3.16972 3.17535 3.37234 3.43514 3.70093 3.86453 3.96692 4.03521 4.13705 4.18318 4.28952 4.36010 4.40320 4.44727 4.53939 4.55512 4.58299 4.66665 4.71817 4.76150 4.78751 4.91322 4.93042 4.98335 5.08163 5.12657 5.22428 5.33736 5.39310 5.51969 5.62240 5.71066 5.96214 6.17456 6.49071 6.65851 6.94640 7.28330 7.78447 8.75644 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014380 B = 0.003502 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.676558 B = 7993.042694 C = 9114.294629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.484 3.516 4 O -0.523 6.523 5 C -0.093 4.093 6 H 0.129 0.871 7 C 0.115 3.885 8 N -0.623 5.623 9 C 0.581 3.419 10 O -0.574 6.574 11 C -0.236 4.236 12 C -0.034 4.034 13 C -0.194 4.194 14 C -0.041 4.041 15 C -0.252 4.252 16 C 0.151 3.849 17 O -0.203 6.203 18 C -0.422 4.422 19 H 0.108 0.892 20 C -0.023 4.023 21 N -0.910 5.910 22 Si 1.022 2.978 23 H -0.244 1.244 24 H -0.269 1.269 25 H -0.271 1.271 26 C 0.103 3.897 27 C -0.088 4.088 28 H 0.118 0.882 29 C -0.142 4.142 30 H 0.131 0.869 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.154 0.846 36 H 0.165 0.835 37 H 0.155 0.845 38 H 0.124 0.876 39 H 0.271 0.729 40 H 0.062 0.938 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.725 -7.414 -1.379 22.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.328 3.672 4 O -0.412 6.412 5 C -0.113 4.113 6 H 0.147 0.853 7 C -0.008 4.008 8 N -0.358 5.358 9 C 0.374 3.626 10 O -0.453 6.453 11 C -0.240 4.240 12 C -0.053 4.053 13 C -0.212 4.212 14 C -0.059 4.059 15 C -0.272 4.272 16 C 0.096 3.904 17 O -0.106 6.106 18 C -0.497 4.497 19 H 0.125 0.875 20 C -0.222 4.222 21 N -0.547 5.547 22 Si 0.840 3.160 23 H -0.167 1.167 24 H -0.194 1.194 25 H -0.196 1.196 26 C -0.020 4.020 27 C -0.107 4.107 28 H 0.136 0.864 29 C -0.199 4.199 30 H 0.149 0.851 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.171 0.829 36 H 0.183 0.817 37 H 0.173 0.827 38 H 0.142 0.858 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -21.224 -6.297 -1.388 22.182 hybrid contribution 1.110 0.380 -0.273 1.205 sum -20.114 -5.917 -1.661 21.032 Atomic orbital electron populations 1.23601 0.74446 1.05844 1.02712 1.86530 1.25173 1.32099 1.83356 1.23233 0.91197 0.81494 0.71311 1.90641 1.67164 1.37095 1.46338 1.22087 0.87735 0.99239 1.02243 0.85274 1.22527 0.87388 0.96024 0.94836 1.48761 1.12778 1.09580 1.64699 1.18151 0.79881 0.88312 0.76282 1.90846 1.43577 1.54887 1.55953 1.19089 0.93818 0.94339 1.16775 1.21323 0.96527 0.93892 0.93529 1.21170 0.98166 0.95039 1.06844 1.21429 0.91856 0.99955 0.92616 1.21295 1.02028 0.93973 1.09877 1.19961 0.88241 0.91608 0.90547 1.84092 1.20436 1.37014 1.69103 1.22017 0.87446 0.93552 1.46725 0.87467 1.26744 1.02870 0.96506 0.96061 1.70302 1.31770 1.08466 1.44113 0.84502 0.74548 0.78590 0.78320 1.16698 1.19355 1.19595 1.22526 0.98058 0.84390 0.96984 1.22123 0.99298 0.94667 0.94644 0.86403 1.21826 0.98750 1.02064 0.97245 0.85075 0.91880 0.91603 0.88191 0.87709 0.82862 0.81714 0.82728 0.85849 0.92022 0.91962 0.89178 0.90390 0.91597 0.94784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.36 -5.85 10.57 -51.44 -0.54 -6.39 16 3 C 0.48 9.55 7.12 71.24 0.51 10.05 16 4 O -0.52 -12.49 15.01 21.98 0.33 -12.16 16 5 C -0.09 -1.94 3.21 -10.63 -0.03 -1.97 16 6 H 0.13 2.52 7.71 -2.39 -0.02 2.50 16 7 C 0.11 2.62 4.74 86.54 0.41 3.03 16 8 N -0.62 -21.01 3.31 -811.81 -2.69 -23.70 16 9 C 0.58 26.92 7.44 86.70 0.65 27.57 16 10 O -0.57 -34.01 16.18 13.09 0.21 -33.80 16 11 C -0.24 -10.21 5.51 -19.98 -0.11 -10.32 16 12 C -0.03 -1.04 7.90 22.52 0.18 -0.86 16 13 C -0.19 -5.01 10.02 22.25 0.22 -4.78 16 14 C -0.04 -1.21 10.03 22.30 0.22 -0.99 16 15 C -0.25 -10.55 9.12 22.36 0.20 -10.35 16 16 C 0.15 7.66 6.62 22.91 0.15 7.81 16 17 O -0.20 -12.81 8.39 -2.89 -0.02 -12.83 16 18 C -0.42 -25.21 9.44 67.93 0.64 -24.57 16 19 H 0.11 5.74 5.31 -2.91 -0.02 5.72 16 20 C -0.02 -1.36 5.49 84.85 0.47 -0.90 16 21 N -0.91 -59.27 13.67 21.62 0.30 -58.98 16 22 Si 1.02 43.91 29.55 68.60 2.03 45.93 16 23 H -0.24 -9.42 7.11 99.48 0.71 -8.71 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 26 C 0.10 3.01 6.61 86.52 0.57 3.58 16 27 C -0.09 -2.06 3.24 -9.90 -0.03 -2.10 16 28 H 0.12 2.58 6.47 -2.39 -0.02 2.56 16 29 C -0.14 -3.48 8.91 71.98 0.64 -2.84 16 30 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 32 H 0.07 0.69 8.13 -2.39 -0.02 0.67 16 33 H 0.10 1.76 7.60 -2.39 -0.02 1.75 16 34 H 0.10 2.33 6.39 -2.39 -0.02 2.32 16 35 H 0.15 3.46 6.19 -2.91 -0.02 3.44 16 36 H 0.17 2.70 8.06 -2.91 -0.02 2.67 16 37 H 0.16 3.35 8.06 -2.91 -0.02 3.32 16 38 H 0.12 5.25 5.72 -2.91 -0.02 5.23 16 39 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 40 H 0.06 2.19 7.57 -2.39 -0.02 2.17 16 41 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -88.94 368.33 6.53 -82.41 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 1.03 Total: 25.65 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: 5.88 Total: -6.14 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -2.39 Total: -82.67 kcal Atomic # 8 Polarization: -65.15 SS G_CDS: -0.03 Total: -65.18 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -88.94 6.53 -82.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279928477.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.568 kcal (2) G-P(sol) polarization free energy of solvation -88.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds