Wall clock time and date at job start Tue Mar 31 2020 18:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99858 * 2 1 4 4 O 1.20824 * 120.00569 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99833 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.47629 * 60.00068 * 5 3 2 7 7 C 1.53005 * 109.47258 * 300.00203 * 5 3 2 8 8 N 1.46494 * 109.47522 * 180.02562 * 5 3 2 9 9 C 1.46499 * 119.99868 * 59.99593 * 8 5 3 10 10 C 1.34776 * 120.00431 * 240.00353 * 8 5 3 11 11 O 1.21730 * 119.99913 * 359.97438 * 10 8 5 12 12 C 1.46255 * 120.00677 * 179.97438 * 10 8 5 13 13 C 1.35019 * 120.00095 * 179.97438 * 12 10 8 14 14 C 1.46967 * 119.99580 * 180.02562 * 13 12 10 15 15 C 1.40019 * 120.10271 * 359.72202 * 14 13 12 16 16 C 1.37605 * 119.89846 * 179.69875 * 15 14 13 17 17 C 1.39170 * 120.09693 * 0.60505 * 16 15 14 18 18 O 1.35568 * 119.89792 * 179.69742 * 17 16 15 19 19 C 1.34785 * 117.00537 * 174.41909 * 18 17 16 20 20 H 1.08005 * 119.99466 * 5.05589 * 19 18 17 21 21 C 1.38711 * 120.00368 * 185.05597 * 19 18 17 22 22 N 1.31505 * 120.00081 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00096 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46878 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47321 * 119.99893 * 23 21 19 26 26 H 1.48501 * 109.47108 * 240.00175 * 23 21 19 27 27 C 1.39181 * 120.20663 * 359.66844 * 17 16 15 28 28 C 1.37599 * 120.10142 * 0.02801 * 27 17 16 29 29 H 1.09002 * 109.47641 * 59.99193 * 1 2 3 30 30 H 1.08994 * 109.47468 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46597 * 299.99745 * 1 2 3 32 32 H 1.08994 * 109.47272 * 299.99956 * 7 5 3 33 33 H 1.09005 * 109.46691 * 60.00078 * 7 5 3 34 34 H 1.09000 * 109.47437 * 179.97438 * 7 5 3 35 35 H 1.09002 * 109.46982 * 90.01028 * 9 8 5 36 36 H 1.08995 * 109.47219 * 330.00315 * 9 8 5 37 37 H 1.09007 * 109.47218 * 209.99767 * 9 8 5 38 38 H 1.08007 * 119.99590 * 0.02562 * 12 10 8 39 39 H 1.07996 * 120.00579 * 359.97438 * 13 12 10 40 40 H 1.07998 * 120.05354 * 359.97438 * 15 14 13 41 41 H 1.07994 * 119.94743 * 180.27274 * 16 15 14 42 42 H 0.97004 * 120.00294 * 180.02562 * 22 21 19 43 43 H 1.07998 * 119.94857 * 180.02562 * 27 17 16 44 44 H 1.07996 * 120.05176 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.1139 0.5810 1.2483 8 7 3.9817 2.6796 0.0002 9 6 3.5815 3.5613 1.0996 10 6 4.7320 3.1611 -1.0107 11 8 5.0648 2.4285 -1.9241 12 6 5.1463 4.5637 -1.0103 13 6 5.8984 5.0458 -2.0227 14 6 6.3152 6.4552 -2.0219 15 6 5.9287 7.3012 -0.9753 16 6 6.3265 8.6185 -0.9756 17 6 7.1012 9.1133 -2.0205 18 8 7.4857 10.4133 -2.0198 19 6 8.3288 10.8027 -2.9966 20 1 8.6027 10.1120 -3.7805 21 6 8.8447 12.0903 -2.9952 22 7 8.5108 12.9313 -2.0410 23 14 10.0128 12.6301 -4.3494 24 1 10.2268 11.5058 -5.2956 25 1 9.4276 13.7851 -5.0766 26 1 11.3128 13.0282 -3.7523 27 6 7.4830 8.2775 -3.0659 28 6 7.0951 6.9574 -3.0709 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.7245 1.0748 2.1385 33 1 3.8048 -0.4643 1.2481 34 1 5.2024 0.6376 1.2477 35 1 4.3360 3.5273 1.8856 36 1 2.6237 3.2300 1.5007 37 1 3.4873 4.5826 0.7305 38 1 4.8514 5.2137 -0.1996 39 1 6.1944 4.3957 -2.8327 40 1 5.3230 6.9194 -0.1667 41 1 6.0325 9.2706 -0.1665 42 1 8.8713 13.8319 -2.0401 43 1 8.0845 8.6658 -3.8744 44 1 7.3922 6.3094 -3.8822 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281269870.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:11 Heat of formation + Delta-G solvation = -95.249162 kcal Electronic energy + Delta-G solvation = -27054.801228 eV Core-core repulsion = 22939.235908 eV Total energy + Delta-G solvation = -4115.565320 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.13736 -39.70283 -39.14841 -37.11718 -36.83239 -35.79082 -33.39192 -32.46108 -31.82957 -30.43674 -28.29683 -28.04760 -27.12809 -25.75248 -24.90465 -23.28400 -22.18300 -21.30085 -20.09820 -18.81160 -18.28265 -17.84626 -17.41802 -17.24838 -16.97049 -16.62804 -15.82251 -15.17740 -14.84782 -14.79283 -14.45765 -14.15646 -13.91930 -13.82666 -13.71787 -13.50765 -13.30211 -13.08769 -12.79236 -12.74405 -12.57804 -12.47814 -12.31473 -11.91494 -11.88817 -11.77796 -11.62001 -11.15636 -11.15501 -11.09071 -10.75356 -10.66674 -10.53787 -9.84616 -9.62194 -9.50356 -8.98483 -8.85082 -8.39003 -7.12898 -6.66255 -4.20941 1.01677 1.82414 2.10556 2.13026 2.53270 2.90280 3.03014 3.04270 3.10053 3.51743 3.81404 4.26546 4.49674 4.54433 4.64041 4.72624 4.80607 4.87039 4.91367 4.99312 5.04155 5.12518 5.20442 5.24677 5.31968 5.39589 5.51143 5.55945 5.63555 5.66751 5.70608 5.97561 6.00235 6.10846 6.13901 6.45152 6.46158 6.59972 6.78153 6.90403 7.11707 7.19316 7.23761 7.30014 7.37157 7.62969 7.79255 8.15219 8.78648 9.45542 10.50383 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.033711 B = 0.001779 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.400275 B =15738.459202 C =16001.563219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.450 3.550 4 O -0.495 6.495 5 C 0.149 3.851 6 H 0.139 0.861 7 C -0.154 4.154 8 N -0.603 5.603 9 C 0.080 3.920 10 C 0.564 3.436 11 O -0.556 6.556 12 C -0.284 4.284 13 C 0.043 3.957 14 C -0.200 4.200 15 C -0.041 4.041 16 C -0.199 4.199 17 C 0.167 3.833 18 O -0.162 6.162 19 C -0.393 4.393 20 H 0.098 0.902 21 C 0.041 3.959 22 N -0.851 5.851 23 Si 0.945 3.055 24 H -0.264 1.264 25 H -0.274 1.274 26 H -0.274 1.274 27 C -0.242 4.242 28 C -0.034 4.034 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.274 0.726 43 H 0.131 0.869 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.297 -22.088 6.406 25.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.291 3.709 4 O -0.382 6.382 5 C 0.043 3.957 6 H 0.156 0.844 7 C -0.212 4.212 8 N -0.336 5.336 9 C -0.063 4.063 10 C 0.359 3.641 11 O -0.436 6.436 12 C -0.305 4.305 13 C 0.024 3.976 14 C -0.201 4.201 15 C -0.060 4.060 16 C -0.219 4.219 17 C 0.111 3.889 18 O -0.063 6.063 19 C -0.468 4.468 20 H 0.115 0.885 21 C -0.165 4.165 22 N -0.484 5.484 23 Si 0.769 3.231 24 H -0.188 1.188 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.262 4.262 28 C -0.052 4.052 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.084 0.916 43 H 0.149 0.851 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.361 -21.676 6.158 24.802 hybrid contribution 0.158 0.449 -0.588 0.756 sum -10.203 -21.227 5.571 24.202 Atomic orbital electron populations 1.23287 0.76157 1.03774 1.02660 1.86504 1.23553 1.33251 1.84057 1.24355 0.92423 0.81642 0.72461 1.90676 1.66907 1.36203 1.44375 1.20463 0.86353 0.85032 1.03876 0.84390 1.22076 1.02751 1.00963 0.95430 1.47455 1.52863 1.08919 1.24395 1.21881 1.00371 0.95048 0.89002 1.18505 0.76773 0.88682 0.80161 1.90766 1.57027 1.60072 1.35775 1.22440 1.10101 0.93807 1.04124 1.22317 0.87669 0.93158 0.94499 1.18447 1.09247 0.92895 0.99510 1.20877 0.96350 0.92364 0.96386 1.20152 1.06006 0.95847 0.99859 1.19616 0.91881 0.84711 0.92695 1.83903 1.54667 1.19432 1.48286 1.21533 1.23068 0.98268 1.03950 0.88457 1.25400 0.97818 0.94854 0.98416 1.70021 1.41044 1.06182 1.31149 0.85578 0.79065 0.79179 0.79263 1.18849 1.19914 1.19901 1.21104 1.08880 0.94354 1.01822 1.20989 0.93786 0.94594 0.95836 0.91813 0.87946 0.91857 0.91684 0.89993 0.90259 0.92453 0.90785 0.90044 0.85391 0.85903 0.86439 0.86094 0.91630 0.85094 0.86783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.21 10.47 -39.25 -0.41 -3.62 16 3 C 0.45 4.85 6.99 36.00 0.25 5.10 16 4 O -0.50 -6.58 14.26 -18.75 -0.27 -6.85 16 5 C 0.15 1.50 3.16 -69.08 -0.22 1.28 16 6 H 0.14 1.50 6.90 -51.93 -0.36 1.14 16 7 C -0.15 -1.05 9.12 37.16 0.34 -0.71 16 8 N -0.60 -7.06 2.53 -176.96 -0.45 -7.51 16 9 C 0.08 0.75 8.75 59.85 0.52 1.27 16 10 C 0.56 8.20 7.60 -13.04 -0.10 8.10 16 11 O -0.56 -9.56 15.56 5.16 0.08 -9.48 16 12 C -0.28 -3.99 8.61 -37.51 -0.32 -4.31 16 13 C 0.04 0.66 9.45 -37.19 -0.35 0.31 16 14 C -0.20 -3.40 5.87 -105.02 -0.62 -4.02 16 15 C -0.04 -0.71 9.40 -39.15 -0.37 -1.08 16 16 C -0.20 -3.97 9.97 -39.47 -0.39 -4.37 16 17 C 0.17 3.84 6.66 -38.89 -0.26 3.58 16 18 O -0.16 -4.39 9.74 0.74 0.01 -4.38 16 19 C -0.39 -10.41 9.48 30.91 0.29 -10.11 16 20 H 0.10 2.37 5.18 -52.48 -0.27 2.10 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 22 N -0.85 -23.77 13.67 55.48 0.76 -23.01 16 23 Si 0.95 19.48 29.55 -169.99 -5.02 14.46 16 24 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 25 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 26 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 27 C -0.24 -5.00 9.14 -39.46 -0.36 -5.36 16 28 C -0.03 -0.60 9.78 -39.14 -0.38 -0.98 16 29 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 30 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 32 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 33 H 0.08 0.44 8.11 -51.93 -0.42 0.02 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.69 6.28 -51.93 -0.33 0.37 16 37 H 0.08 0.77 6.09 -51.92 -0.32 0.45 16 38 H 0.13 1.57 4.21 -52.48 -0.22 1.35 16 39 H 0.12 1.85 7.52 -52.49 -0.39 1.45 16 40 H 0.12 1.63 6.16 -52.49 -0.32 1.31 16 41 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 42 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.13 2.68 5.62 -52.49 -0.29 2.38 16 44 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 376.01 15.07 5.67 5.67 Total: -1.00 -32.39 376.01 -6.05 -38.45 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -5.42 Total: 5.30 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -1.00 Total: -9.03 kcal Atomic # 7 Polarization: -30.82 SS G_CDS: 0.31 Total: -30.51 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.59 Total: -24.33 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.39 -6.05 -38.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281269870.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.804 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds