Wall clock time and date at job start Tue Mar 31 2020 18:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99858 * 2 1 4 4 O 1.20824 * 120.00569 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99833 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.47629 * 60.00068 * 5 3 2 7 7 C 1.53005 * 109.47258 * 300.00203 * 5 3 2 8 8 N 1.46494 * 109.47522 * 180.02562 * 5 3 2 9 9 C 1.46499 * 119.99868 * 59.99593 * 8 5 3 10 10 C 1.34776 * 120.00431 * 240.00353 * 8 5 3 11 11 O 1.21730 * 119.99913 * 359.97438 * 10 8 5 12 12 C 1.46255 * 120.00677 * 179.97438 * 10 8 5 13 13 C 1.35019 * 120.00095 * 179.97438 * 12 10 8 14 14 C 1.46967 * 119.99580 * 180.02562 * 13 12 10 15 15 C 1.40019 * 120.10271 * 359.72202 * 14 13 12 16 16 C 1.37605 * 119.89846 * 179.69875 * 15 14 13 17 17 C 1.39170 * 120.09693 * 0.60505 * 16 15 14 18 18 O 1.35568 * 119.89792 * 179.69742 * 17 16 15 19 19 C 1.34785 * 117.00537 * 174.41909 * 18 17 16 20 20 H 1.08005 * 119.99466 * 5.05589 * 19 18 17 21 21 C 1.38711 * 120.00368 * 185.05597 * 19 18 17 22 22 N 1.31505 * 120.00081 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00096 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46878 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47321 * 119.99893 * 23 21 19 26 26 H 1.48501 * 109.47108 * 240.00175 * 23 21 19 27 27 C 1.39181 * 120.20663 * 359.66844 * 17 16 15 28 28 C 1.37599 * 120.10142 * 0.02801 * 27 17 16 29 29 H 1.09002 * 109.47641 * 59.99193 * 1 2 3 30 30 H 1.08994 * 109.47468 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46597 * 299.99745 * 1 2 3 32 32 H 1.08994 * 109.47272 * 299.99956 * 7 5 3 33 33 H 1.09005 * 109.46691 * 60.00078 * 7 5 3 34 34 H 1.09000 * 109.47437 * 179.97438 * 7 5 3 35 35 H 1.09002 * 109.46982 * 90.01028 * 9 8 5 36 36 H 1.08995 * 109.47219 * 330.00315 * 9 8 5 37 37 H 1.09007 * 109.47218 * 209.99767 * 9 8 5 38 38 H 1.08007 * 119.99590 * 0.02562 * 12 10 8 39 39 H 1.07996 * 120.00579 * 359.97438 * 13 12 10 40 40 H 1.07998 * 120.05354 * 359.97438 * 15 14 13 41 41 H 1.07994 * 119.94743 * 180.27274 * 16 15 14 42 42 H 0.97004 * 120.00294 * 180.02562 * 22 21 19 43 43 H 1.07998 * 119.94857 * 180.02562 * 27 17 16 44 44 H 1.07996 * 120.05176 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.1139 0.5810 1.2483 8 7 3.9817 2.6796 0.0002 9 6 3.5815 3.5613 1.0996 10 6 4.7320 3.1611 -1.0107 11 8 5.0648 2.4285 -1.9241 12 6 5.1463 4.5637 -1.0103 13 6 5.8984 5.0458 -2.0227 14 6 6.3152 6.4552 -2.0219 15 6 5.9287 7.3012 -0.9753 16 6 6.3265 8.6185 -0.9756 17 6 7.1012 9.1133 -2.0205 18 8 7.4857 10.4133 -2.0198 19 6 8.3288 10.8027 -2.9966 20 1 8.6027 10.1120 -3.7805 21 6 8.8447 12.0903 -2.9952 22 7 8.5108 12.9313 -2.0410 23 14 10.0128 12.6301 -4.3494 24 1 10.2268 11.5058 -5.2956 25 1 9.4276 13.7851 -5.0766 26 1 11.3128 13.0282 -3.7523 27 6 7.4830 8.2775 -3.0659 28 6 7.0951 6.9574 -3.0709 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.7245 1.0748 2.1385 33 1 3.8048 -0.4643 1.2481 34 1 5.2024 0.6376 1.2477 35 1 4.3360 3.5273 1.8856 36 1 2.6237 3.2300 1.5007 37 1 3.4873 4.5826 0.7305 38 1 4.8514 5.2137 -0.1996 39 1 6.1944 4.3957 -2.8327 40 1 5.3230 6.9194 -0.1667 41 1 6.0325 9.2706 -0.1665 42 1 8.8713 13.8319 -2.0401 43 1 8.0845 8.6658 -3.8744 44 1 7.3922 6.3094 -3.8822 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281269870.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:10 Heat of formation + Delta-G solvation = -114.346679 kcal Electronic energy + Delta-G solvation = -27055.629358 eV Core-core repulsion = 22939.235908 eV Total energy + Delta-G solvation = -4116.393451 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.99607 -40.91781 -40.60453 -38.54519 -37.83981 -36.75000 -34.82526 -34.11140 -32.78587 -31.96714 -29.66261 -28.67381 -27.94429 -27.52718 -25.82556 -24.48041 -23.68670 -22.47359 -21.22729 -20.19887 -19.51926 -18.97129 -18.83918 -18.26494 -18.05086 -17.46436 -16.84546 -16.46628 -16.29309 -16.03680 -15.96587 -15.61455 -15.22313 -14.85548 -14.82297 -14.57469 -14.43882 -14.15474 -14.10848 -13.67790 -13.55208 -13.37817 -13.31586 -13.20956 -12.95985 -12.86841 -12.73442 -12.60146 -12.56384 -12.19002 -12.10386 -11.84958 -11.59318 -11.21407 -11.13470 -11.00562 -10.58891 -9.89559 -9.87837 -8.69747 -8.52485 -6.18543 -0.29637 0.58470 0.99709 1.05535 1.36123 1.37834 1.46064 1.54036 2.03320 2.15084 2.32236 2.85783 3.17377 3.41388 3.46983 3.67698 3.88479 3.92974 4.00249 4.07632 4.16246 4.26776 4.28076 4.30073 4.34020 4.47136 4.64124 4.66061 4.67742 4.70268 4.77348 4.90077 4.94409 5.02129 5.12882 5.18184 5.19717 5.25367 5.32331 5.38994 5.57439 5.63476 5.79400 5.97277 6.09689 6.21178 6.56893 6.92028 7.03648 7.68957 8.69744 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.033711 B = 0.001779 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.400275 B =15738.459202 C =16001.563219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.454 3.546 4 O -0.525 6.525 5 C 0.143 3.857 6 H 0.129 0.871 7 C -0.146 4.146 8 N -0.598 5.598 9 C 0.073 3.927 10 C 0.556 3.444 11 O -0.586 6.586 12 C -0.252 4.252 13 C 0.025 3.975 14 C -0.173 4.173 15 C -0.036 4.036 16 C -0.207 4.207 17 C 0.131 3.869 18 O -0.219 6.219 19 C -0.416 4.416 20 H 0.106 0.894 21 C -0.019 4.019 22 N -0.913 5.913 23 Si 1.019 2.981 24 H -0.251 1.251 25 H -0.269 1.269 26 H -0.268 1.268 27 C -0.249 4.249 28 C -0.038 4.038 29 H 0.055 0.945 30 H 0.135 0.865 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.152 0.848 39 H 0.128 0.872 40 H 0.158 0.842 41 H 0.123 0.877 42 H 0.275 0.725 43 H 0.125 0.875 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.279 -25.798 7.064 29.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.296 3.704 4 O -0.414 6.414 5 C 0.037 3.963 6 H 0.146 0.854 7 C -0.203 4.203 8 N -0.330 5.330 9 C -0.069 4.069 10 C 0.350 3.650 11 O -0.469 6.469 12 C -0.272 4.272 13 C 0.005 3.995 14 C -0.173 4.173 15 C -0.054 4.054 16 C -0.226 4.226 17 C 0.079 3.921 18 O -0.124 6.124 19 C -0.492 4.492 20 H 0.124 0.876 21 C -0.217 4.217 22 N -0.550 5.550 23 Si 0.838 3.162 24 H -0.174 1.174 25 H -0.194 1.194 26 H -0.193 1.193 27 C -0.268 4.268 28 C -0.056 4.056 29 H 0.074 0.926 30 H 0.153 0.847 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.169 0.831 39 H 0.146 0.854 40 H 0.175 0.825 41 H 0.141 0.859 42 H 0.084 0.916 43 H 0.143 0.857 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.388 -25.484 6.846 28.740 hybrid contribution 0.104 0.951 -0.619 1.140 sum -11.284 -24.533 6.227 27.712 Atomic orbital electron populations 1.23575 0.74567 1.05890 1.02461 1.86496 1.25070 1.32177 1.83466 1.24435 0.92616 0.81698 0.71637 1.90666 1.67580 1.37160 1.45995 1.20674 0.86164 0.84256 1.05159 0.85373 1.22059 1.02732 1.01616 0.93943 1.47540 1.51529 1.09989 1.23939 1.22090 1.01365 0.94601 0.88820 1.18609 0.77268 0.88668 0.80438 1.90764 1.58299 1.60743 1.37053 1.22755 1.07020 0.93938 1.03472 1.22216 0.89427 0.92065 0.95801 1.18761 1.06564 0.93717 0.98296 1.21270 0.95877 0.90911 0.97348 1.20416 1.05624 0.97255 0.99305 1.20190 0.93067 0.84380 0.94464 1.83885 1.57216 1.21569 1.49747 1.21947 1.23770 0.98988 1.04493 0.87650 1.26609 0.99493 0.94641 1.00986 1.70152 1.43978 1.06795 1.34089 0.84522 0.76559 0.78943 0.76174 1.17388 1.19351 1.19298 1.21206 1.08995 0.95426 1.01200 1.21320 0.93463 0.93679 0.97101 0.92579 0.84736 0.91532 0.90662 0.88356 0.90003 0.89890 0.90624 0.89857 0.83071 0.85438 0.82457 0.85887 0.91591 0.85704 0.83665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.36 -5.55 10.47 -51.40 -0.54 -6.09 16 3 C 0.45 8.78 6.99 71.24 0.50 9.28 16 4 O -0.53 -12.96 14.26 21.97 0.31 -12.64 16 5 C 0.14 2.51 3.16 44.25 0.14 2.65 16 6 H 0.13 2.55 6.90 -2.38 -0.02 2.54 16 7 C -0.15 -1.51 9.12 71.98 0.66 -0.85 16 8 N -0.60 -12.13 2.53 -831.99 -2.11 -14.23 16 9 C 0.07 1.09 8.75 127.77 1.12 2.21 16 10 C 0.56 14.45 7.60 86.33 0.66 15.11 16 11 O -0.59 -18.84 15.56 -4.44 -0.07 -18.91 16 12 C -0.25 -6.05 8.61 23.61 0.20 -5.85 16 13 C 0.02 0.67 9.45 23.82 0.23 0.89 16 14 C -0.17 -5.37 5.87 -20.12 -0.12 -5.49 16 15 C -0.04 -1.14 9.40 22.55 0.21 -0.93 16 16 C -0.21 -8.24 9.97 22.34 0.22 -8.02 16 17 C 0.13 6.24 6.66 22.72 0.15 6.39 16 18 O -0.22 -12.67 9.74 -20.28 -0.20 -12.87 16 19 C -0.42 -23.38 9.48 67.93 0.64 -22.74 16 20 H 0.11 5.41 5.18 -2.91 -0.02 5.40 16 21 C -0.02 -1.02 5.49 84.85 0.47 -0.55 16 22 N -0.91 -54.30 13.67 21.62 0.30 -54.01 16 23 Si 1.02 41.47 29.55 68.60 2.03 43.50 16 24 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 25 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 26 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 27 C -0.25 -10.41 9.14 22.35 0.20 -10.20 16 28 C -0.04 -1.27 9.78 22.55 0.22 -1.05 16 29 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 30 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.66 8.13 -2.39 -0.02 0.64 16 32 H 0.07 0.65 7.67 -2.39 -0.02 0.63 16 33 H 0.10 0.72 8.11 -2.38 -0.02 0.71 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.08 1.17 6.28 -2.39 -0.02 1.15 16 37 H 0.08 1.22 6.09 -2.38 -0.01 1.20 16 38 H 0.15 2.91 4.21 -2.91 -0.01 2.89 16 39 H 0.13 3.43 7.52 -2.91 -0.02 3.41 16 40 H 0.16 3.63 6.16 -2.91 -0.02 3.61 16 41 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 42 H 0.27 14.91 8.31 -92.70 -0.77 14.14 16 43 H 0.13 5.28 5.62 -2.91 -0.02 5.26 16 44 H 0.15 3.96 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -75.64 376.01 7.46 -68.18 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 1.04 Total: 24.74 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: 6.70 Total: -17.66 kcal Atomic # 7 Polarization: -66.43 SS G_CDS: -1.81 Total: -68.24 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: -0.49 Total: -50.52 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -75.64 7.46 -68.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281269870.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.166 kcal (2) G-P(sol) polarization free energy of solvation -75.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds