Wall clock time and date at job start Tue Mar 31 2020 18:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 116.99919 * 2 1 4 4 O 1.20824 * 119.99994 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99884 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.47082 * 59.99760 * 5 3 2 7 7 C 1.53002 * 109.46738 * 299.99872 * 5 3 2 8 8 C 1.53001 * 109.46557 * 179.97438 * 7 5 3 9 9 C 1.53005 * 109.47385 * 60.00578 * 8 7 5 10 10 C 1.53000 * 109.46617 * 299.99794 * 9 8 7 11 11 C 1.52999 * 109.47050 * 180.02562 * 5 3 2 12 12 H 1.08998 * 109.46898 * 59.99719 * 11 5 3 13 13 S 1.81394 * 109.47111 * 300.00126 * 11 5 3 14 14 O 1.42097 * 110.54818 * 75.58808 * 13 11 5 15 15 O 1.42100 * 110.54519 * 298.83256 * 13 11 5 16 16 N 1.65605 * 104.45147 * 187.21374 * 13 11 5 17 17 C 1.46500 * 120.00274 * 96.17569 * 16 13 11 18 18 C 1.46502 * 120.00054 * 276.18156 * 16 13 11 19 19 H 1.09000 * 109.46839 * 4.88228 * 18 16 13 20 20 C 1.52997 * 109.47267 * 244.88470 * 18 16 13 21 21 C 1.50696 * 109.47402 * 124.87974 * 18 16 13 22 22 H 1.08005 * 119.99937 * 0.02562 * 21 18 16 23 23 C 1.37879 * 120.00308 * 179.97438 * 21 18 16 24 24 N 1.31508 * 119.99559 * 0.02562 * 23 21 18 25 25 Si 1.86795 * 120.00017 * 180.02562 * 23 21 18 26 26 H 1.48501 * 109.47449 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47276 * 120.00378 * 25 23 21 28 28 H 1.48506 * 109.47043 * 240.00052 * 25 23 21 29 29 H 1.08996 * 109.47087 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46999 * 300.00328 * 1 2 3 31 31 H 1.09003 * 109.46847 * 59.99776 * 1 2 3 32 32 H 1.08997 * 109.47354 * 60.00630 * 7 5 3 33 33 H 1.08998 * 109.47243 * 299.99789 * 7 5 3 34 34 H 1.08998 * 109.47730 * 300.00256 * 8 7 5 35 35 H 1.08999 * 109.47170 * 180.02562 * 8 7 5 36 36 H 1.08994 * 109.47386 * 179.97438 * 9 8 7 37 37 H 1.08998 * 109.46950 * 59.99200 * 9 8 7 38 38 H 1.09001 * 109.47411 * 300.00001 * 10 9 8 39 39 H 1.09006 * 109.47060 * 179.97438 * 10 9 8 40 40 H 1.08999 * 109.47171 * 270.00489 * 17 16 13 41 41 H 1.08997 * 109.47059 * 30.00374 * 17 16 13 42 42 H 1.09002 * 109.47148 * 150.00232 * 17 16 13 43 43 H 1.09004 * 109.46564 * 293.76636 * 20 18 16 44 44 H 1.09003 * 109.47198 * 53.76259 * 20 18 16 45 45 H 1.08993 * 109.47253 * 173.76180 * 20 18 16 46 46 H 0.97007 * 119.99647 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.1138 0.5811 1.2484 8 6 5.6417 0.6606 1.2474 9 6 6.0762 2.1277 1.2473 10 6 5.5286 2.8215 -0.0016 11 6 4.0001 2.7421 0.0002 12 1 3.6107 3.2356 0.8906 13 16 3.3509 3.5653 -1.4801 14 8 1.9610 3.8240 -1.3378 15 8 3.8661 2.9561 -2.6559 16 7 4.0500 5.0665 -1.4582 17 6 5.2652 5.3200 -2.2362 18 6 3.4532 6.1409 -0.6609 19 1 2.6142 5.7454 -0.0884 20 6 2.9584 7.2511 -1.5901 21 6 4.4866 6.6993 0.2831 22 1 5.4880 6.2946 0.2883 23 6 4.1542 7.7275 1.1395 24 7 2.9350 8.2205 1.1328 25 14 5.4354 8.4201 2.3091 26 1 6.7191 7.6973 2.1216 27 1 5.6341 9.8643 2.0268 28 1 4.9714 8.2487 3.7094 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.8048 -0.4642 1.2483 33 1 3.7244 1.0750 2.1386 34 1 6.0308 0.1664 0.3572 35 1 6.0319 0.1659 2.1369 36 1 7.1646 2.1843 1.2471 37 1 5.6871 2.6218 2.1375 38 1 5.9176 2.3273 -0.8919 39 1 5.8376 3.8668 -0.0015 40 1 6.1404 5.1039 -1.6236 41 1 5.2720 4.6799 -3.1183 42 1 5.2871 6.3650 -2.5455 43 1 3.8108 7.7212 -2.0805 44 1 2.2950 6.8258 -2.3432 45 1 2.4168 7.9971 -1.0086 46 1 2.7012 8.9442 1.7350 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330861607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:39 Heat of formation + Delta-G solvation = -159.746012 kcal Electronic energy + Delta-G solvation = -29768.922795 eV Core-core repulsion = 25786.004632 eV Total energy + Delta-G solvation = -3982.918162 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.72217 -38.20989 -36.63008 -36.27149 -36.05285 -35.12530 -32.58777 -31.56160 -31.01642 -29.02419 -27.73761 -25.46316 -25.15819 -24.03478 -23.01200 -21.00470 -20.61800 -19.92451 -18.09232 -17.55272 -17.05426 -16.88557 -16.39633 -16.26848 -15.84897 -15.28415 -14.61891 -14.43749 -14.18303 -14.06112 -13.73502 -13.52159 -13.26292 -13.03280 -12.74952 -12.60477 -12.45516 -12.06141 -11.81074 -11.71757 -11.61190 -11.48004 -11.31997 -11.27404 -11.19230 -11.07358 -10.93306 -10.83038 -10.75561 -10.67295 -10.52039 -10.37568 -10.22239 -10.15734 -9.98183 -9.66225 -9.09497 -8.48523 -7.84202 -6.07924 -4.16177 0.94801 2.20008 2.61501 3.23552 3.31738 3.33463 3.42875 4.18732 4.35756 4.42022 4.49866 4.70060 4.77397 4.99318 5.03519 5.10471 5.18581 5.19988 5.21426 5.22998 5.30782 5.43528 5.51016 5.67750 5.75091 5.78815 5.91622 5.97128 6.00691 6.09842 6.14987 6.30422 6.34875 6.39246 6.43607 6.70976 6.92325 6.97258 7.17502 7.53742 7.67159 7.73890 7.82049 8.07650 8.28971 8.87483 9.50235 10.97636 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012907 B = 0.005144 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.832703 B = 5442.274206 C = 5940.002747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.358 6.358 3 C 0.419 3.581 4 O -0.445 6.445 5 C -0.061 4.061 6 H 0.118 0.882 7 C -0.100 4.100 8 C -0.118 4.118 9 C -0.115 4.115 10 C -0.100 4.100 11 C -0.584 4.584 12 H 0.147 0.853 13 S 2.600 3.400 14 O -0.924 6.924 15 O -0.981 6.981 16 N -0.981 5.981 17 C 0.098 3.902 18 C 0.270 3.730 19 H 0.056 0.944 20 C -0.142 4.142 21 C -0.526 4.526 22 H 0.064 0.936 23 C 0.064 3.936 24 N -0.885 5.885 25 Si 0.894 3.106 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.285 1.285 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.043 0.957 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.033 0.967 44 H 0.014 0.986 45 H 0.088 0.912 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.414 -15.875 -0.271 16.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.276 6.276 3 C 0.258 3.742 4 O -0.329 6.329 5 C -0.082 4.082 6 H 0.136 0.864 7 C -0.139 4.139 8 C -0.156 4.156 9 C -0.153 4.153 10 C -0.138 4.138 11 C -0.691 4.691 12 H 0.165 0.835 13 S 2.692 3.308 14 O -0.914 6.914 15 O -0.972 6.972 16 N -0.820 5.820 17 C -0.048 4.048 18 C 0.167 3.833 19 H 0.073 0.927 20 C -0.201 4.201 21 C -0.565 4.565 22 H 0.082 0.918 23 C -0.138 4.138 24 N -0.524 5.524 25 Si 0.722 3.278 26 H -0.197 1.197 27 H -0.210 1.210 28 H -0.211 1.211 29 H 0.118 0.882 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.052 0.948 44 H 0.033 0.967 45 H 0.106 0.894 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.444 -15.732 -0.827 15.942 hybrid contribution 0.756 0.617 1.393 1.701 sum 3.200 -15.115 0.566 15.460 Atomic orbital electron populations 1.23306 0.76238 1.03439 1.03127 1.86436 1.23467 1.33077 1.84580 1.24088 0.92325 0.82474 0.75302 1.91108 1.66465 1.34396 1.40883 1.20774 0.87433 0.96004 1.03959 0.86439 1.21452 0.96561 1.00468 0.95387 1.21562 0.94363 0.97295 1.02344 1.21492 1.00487 0.95004 0.98297 1.21368 0.89222 1.03650 0.99601 1.30641 1.07672 1.04222 1.26526 0.83480 1.05347 0.75266 0.74429 0.75772 1.93668 1.28736 1.82767 1.86240 1.93485 1.81871 1.78075 1.43759 1.57435 1.39008 1.26002 1.59586 1.21301 0.86330 1.02898 0.94283 1.18693 0.93261 0.83317 0.88012 0.92668 1.22027 0.99102 1.00745 0.98256 1.21418 0.97627 1.18207 1.19277 0.91769 1.24931 0.95340 0.96439 0.97132 1.69919 1.18102 1.26469 1.37866 0.86512 0.81610 0.78949 0.80721 1.19747 1.21000 1.21085 0.88177 0.91677 0.91541 0.90263 0.90870 0.91470 0.91280 0.91296 0.91197 0.90763 0.88494 0.93868 0.91915 0.90662 0.94836 0.96708 0.89368 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.85 10.47 -39.26 -0.41 -5.26 16 3 C 0.42 6.76 6.93 36.01 0.25 7.01 16 4 O -0.45 -8.97 11.96 -27.00 -0.32 -9.29 16 5 C -0.06 -0.85 2.16 -91.77 -0.20 -1.05 16 6 H 0.12 1.45 8.14 -51.93 -0.42 1.03 16 7 C -0.10 -1.09 5.13 -26.73 -0.14 -1.23 16 8 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 9 C -0.11 -1.30 5.92 -26.73 -0.16 -1.46 16 10 C -0.10 -1.39 4.95 -26.71 -0.13 -1.52 16 11 C -0.58 -9.48 1.99 -26.71 -0.05 -9.54 16 12 H 0.15 2.54 8.10 -51.93 -0.42 2.12 16 13 S 2.60 52.91 4.34 -107.50 -0.47 52.45 16 14 O -0.92 -22.37 13.39 -67.43 -0.90 -23.27 16 15 O -0.98 -20.25 16.46 -57.54 -0.95 -21.20 16 16 N -0.98 -20.70 2.42 -115.86 -0.28 -20.98 16 17 C 0.10 1.77 9.27 59.85 0.55 2.33 16 18 C 0.27 6.68 2.49 -69.08 -0.17 6.51 16 19 H 0.06 1.52 7.17 -51.93 -0.37 1.15 16 20 C -0.14 -3.49 8.83 37.16 0.33 -3.16 16 21 C -0.53 -13.33 8.31 -34.44 -0.29 -13.62 16 22 H 0.06 1.56 7.37 -52.48 -0.39 1.17 16 23 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 24 N -0.89 -24.54 11.39 55.43 0.63 -23.90 16 25 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 31 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 32 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.10 1.46 6.30 -51.93 -0.33 1.13 16 40 H 0.04 0.69 6.89 -51.93 -0.36 0.33 16 41 H 0.06 1.05 6.87 -51.93 -0.36 0.70 16 42 H 0.07 1.36 6.82 -51.93 -0.35 1.01 16 43 H 0.03 0.77 7.09 -51.93 -0.37 0.40 16 44 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.09 2.34 6.26 -51.93 -0.33 2.02 16 46 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 367.90 15.07 5.54 5.54 Total: -1.00 -32.91 367.90 -8.84 -41.76 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -7.47 Total: 2.91 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 0.81 Total: -13.99 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.35 Total: -44.89 kcal Atomic # 8 Polarization: -56.44 SS G_CDS: -2.58 Total: -59.02 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 52.91 SS G_CDS: -0.47 Total: 52.45 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.91 -8.84 -41.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330861607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.989 kcal (2) G-P(sol) polarization free energy of solvation -32.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds