Wall clock time and date at job start Tue Mar 31 2020 18:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 116.99919 * 2 1 4 4 O 1.20824 * 119.99994 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99884 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.47082 * 59.99760 * 5 3 2 7 7 C 1.53002 * 109.46738 * 299.99872 * 5 3 2 8 8 C 1.53001 * 109.46557 * 179.97438 * 7 5 3 9 9 C 1.53005 * 109.47385 * 60.00578 * 8 7 5 10 10 C 1.53000 * 109.46617 * 299.99794 * 9 8 7 11 11 C 1.52999 * 109.47050 * 180.02562 * 5 3 2 12 12 H 1.08998 * 109.46898 * 59.99719 * 11 5 3 13 13 S 1.81394 * 109.47111 * 300.00126 * 11 5 3 14 14 O 1.42097 * 110.54818 * 75.58808 * 13 11 5 15 15 O 1.42100 * 110.54519 * 298.83256 * 13 11 5 16 16 N 1.65605 * 104.45147 * 187.21374 * 13 11 5 17 17 C 1.46500 * 120.00274 * 96.17569 * 16 13 11 18 18 C 1.46502 * 120.00054 * 276.18156 * 16 13 11 19 19 H 1.09000 * 109.46839 * 4.88228 * 18 16 13 20 20 C 1.52997 * 109.47267 * 244.88470 * 18 16 13 21 21 C 1.50696 * 109.47402 * 124.87974 * 18 16 13 22 22 H 1.08005 * 119.99937 * 0.02562 * 21 18 16 23 23 C 1.37879 * 120.00308 * 179.97438 * 21 18 16 24 24 N 1.31508 * 119.99559 * 0.02562 * 23 21 18 25 25 Si 1.86795 * 120.00017 * 180.02562 * 23 21 18 26 26 H 1.48501 * 109.47449 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47276 * 120.00378 * 25 23 21 28 28 H 1.48506 * 109.47043 * 240.00052 * 25 23 21 29 29 H 1.08996 * 109.47087 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46999 * 300.00328 * 1 2 3 31 31 H 1.09003 * 109.46847 * 59.99776 * 1 2 3 32 32 H 1.08997 * 109.47354 * 60.00630 * 7 5 3 33 33 H 1.08998 * 109.47243 * 299.99789 * 7 5 3 34 34 H 1.08998 * 109.47730 * 300.00256 * 8 7 5 35 35 H 1.08999 * 109.47170 * 180.02562 * 8 7 5 36 36 H 1.08994 * 109.47386 * 179.97438 * 9 8 7 37 37 H 1.08998 * 109.46950 * 59.99200 * 9 8 7 38 38 H 1.09001 * 109.47411 * 300.00001 * 10 9 8 39 39 H 1.09006 * 109.47060 * 179.97438 * 10 9 8 40 40 H 1.08999 * 109.47171 * 270.00489 * 17 16 13 41 41 H 1.08997 * 109.47059 * 30.00374 * 17 16 13 42 42 H 1.09002 * 109.47148 * 150.00232 * 17 16 13 43 43 H 1.09004 * 109.46564 * 293.76636 * 20 18 16 44 44 H 1.09003 * 109.47198 * 53.76259 * 20 18 16 45 45 H 1.08993 * 109.47253 * 173.76180 * 20 18 16 46 46 H 0.97007 * 119.99647 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.1138 0.5811 1.2484 8 6 5.6417 0.6606 1.2474 9 6 6.0762 2.1277 1.2473 10 6 5.5286 2.8215 -0.0016 11 6 4.0001 2.7421 0.0002 12 1 3.6107 3.2356 0.8906 13 16 3.3509 3.5653 -1.4801 14 8 1.9610 3.8240 -1.3378 15 8 3.8661 2.9561 -2.6559 16 7 4.0500 5.0665 -1.4582 17 6 5.2652 5.3200 -2.2362 18 6 3.4532 6.1409 -0.6609 19 1 2.6142 5.7454 -0.0884 20 6 2.9584 7.2511 -1.5901 21 6 4.4866 6.6993 0.2831 22 1 5.4880 6.2946 0.2883 23 6 4.1542 7.7275 1.1395 24 7 2.9350 8.2205 1.1328 25 14 5.4354 8.4201 2.3091 26 1 6.7191 7.6973 2.1216 27 1 5.6341 9.8643 2.0268 28 1 4.9714 8.2487 3.7094 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.8048 -0.4642 1.2483 33 1 3.7244 1.0750 2.1386 34 1 6.0308 0.1664 0.3572 35 1 6.0319 0.1659 2.1369 36 1 7.1646 2.1843 1.2471 37 1 5.6871 2.6218 2.1375 38 1 5.9176 2.3273 -0.8919 39 1 5.8376 3.8668 -0.0015 40 1 6.1404 5.1039 -1.6236 41 1 5.2720 4.6799 -3.1183 42 1 5.2871 6.3650 -2.5455 43 1 3.8108 7.7212 -2.0805 44 1 2.2950 6.8258 -2.3432 45 1 2.4168 7.9971 -1.0086 46 1 2.7012 8.9442 1.7350 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330861607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:38 Heat of formation + Delta-G solvation = -180.696260 kcal Electronic energy + Delta-G solvation = -29769.831265 eV Core-core repulsion = 25786.004632 eV Total energy + Delta-G solvation = -3983.826633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.93275 -39.25895 -38.16352 -37.95395 -37.49945 -36.81221 -34.49986 -32.60404 -32.06749 -30.90172 -28.69671 -27.24288 -27.00330 -25.12330 -24.02567 -22.63641 -21.95686 -20.96551 -19.68608 -18.75595 -18.62417 -18.26722 -18.21081 -17.59805 -17.17160 -16.96757 -16.32069 -15.50837 -15.33081 -15.12123 -15.02868 -14.97333 -14.64579 -14.49200 -14.29173 -13.72355 -13.68344 -13.47239 -13.29131 -13.20415 -13.03064 -13.01031 -12.91150 -12.74005 -12.67773 -12.65078 -12.42224 -12.20445 -12.18698 -12.12478 -11.87775 -11.83338 -11.74654 -11.47070 -11.28756 -11.11425 -10.79384 -10.51841 -9.54131 -8.08065 -6.23126 -0.61496 0.96219 1.45408 1.47533 1.51832 1.58338 1.83194 2.46080 2.83673 3.10008 3.20905 3.22232 3.55725 3.70130 3.83945 4.05344 4.13198 4.18432 4.23449 4.27400 4.28487 4.33596 4.40772 4.65141 4.72773 4.75950 4.79611 4.88791 4.93985 4.94271 5.04898 5.11327 5.15934 5.18008 5.19187 5.24248 5.28915 5.33622 5.52040 5.61917 5.73498 5.86264 6.08558 6.30116 6.52886 6.87753 7.47069 8.97837 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012907 B = 0.005144 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.832703 B = 5442.274206 C = 5940.002747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.350 6.350 3 C 0.415 3.585 4 O -0.496 6.496 5 C -0.065 4.065 6 H 0.140 0.860 7 C -0.096 4.096 8 C -0.114 4.114 9 C -0.113 4.113 10 C -0.104 4.104 11 C -0.558 4.558 12 H 0.131 0.869 13 S 2.590 3.410 14 O -0.975 6.975 15 O -0.989 6.989 16 N -0.990 5.990 17 C 0.091 3.909 18 C 0.278 3.722 19 H 0.015 0.985 20 C -0.135 4.135 21 C -0.525 4.525 22 H 0.078 0.922 23 C 0.012 3.988 24 N -0.923 5.923 25 Si 0.961 3.039 26 H -0.255 1.255 27 H -0.285 1.285 28 H -0.287 1.287 29 H 0.145 0.855 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.044 0.956 44 H 0.012 0.988 45 H 0.064 0.936 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.436 -18.381 0.600 19.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.266 6.266 3 C 0.257 3.743 4 O -0.382 6.382 5 C -0.085 4.085 6 H 0.158 0.842 7 C -0.135 4.135 8 C -0.151 4.151 9 C -0.152 4.152 10 C -0.142 4.142 11 C -0.670 4.670 12 H 0.149 0.851 13 S 2.688 3.312 14 O -0.965 6.965 15 O -0.980 6.980 16 N -0.828 5.828 17 C -0.054 4.054 18 C 0.174 3.826 19 H 0.033 0.967 20 C -0.195 4.195 21 C -0.564 4.564 22 H 0.096 0.904 23 C -0.187 4.187 24 N -0.562 5.562 25 Si 0.786 3.214 26 H -0.179 1.179 27 H -0.211 1.211 28 H -0.214 1.214 29 H 0.163 0.837 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.076 0.924 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.063 0.937 44 H 0.031 0.969 45 H 0.083 0.917 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.470 -18.242 -0.024 19.045 hybrid contribution -0.253 1.278 1.098 1.704 sum 5.217 -16.964 1.074 17.781 Atomic orbital electron populations 1.23632 0.74853 1.06096 1.02383 1.86432 1.24815 1.31526 1.83819 1.24645 0.93361 0.82432 0.73883 1.91111 1.67673 1.36084 1.43373 1.21028 0.86126 0.94543 1.06852 0.84236 1.21542 0.97735 1.01211 0.92969 1.21599 0.92873 0.96156 1.04471 1.21532 1.01696 0.95903 0.96058 1.21523 0.86840 1.03674 1.02164 1.30307 1.09536 1.05233 1.21880 0.85065 1.05373 0.74372 0.74457 0.76979 1.93611 1.32093 1.83509 1.87295 1.93458 1.81588 1.77810 1.45146 1.57264 1.39845 1.25786 1.59921 1.21513 0.85922 1.03031 0.94900 1.18311 0.92375 0.83855 0.88101 0.96710 1.21924 0.99215 1.00418 0.97943 1.21677 0.98040 1.17777 1.18903 0.90397 1.25769 0.97091 0.96961 0.98872 1.70077 1.20163 1.27117 1.38868 0.85466 0.79710 0.78053 0.78150 1.17902 1.21120 1.21357 0.83737 0.92035 0.92846 0.87794 0.91662 0.89679 0.88799 0.89039 0.92351 0.88822 0.89858 0.91417 0.90717 0.91079 0.93655 0.96850 0.91691 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 10.56 113.37 1.20 1.69 16 2 O -0.35 -9.04 10.47 -51.43 -0.54 -9.58 16 3 C 0.42 13.37 6.93 71.24 0.49 13.86 16 4 O -0.50 -20.92 11.96 29.86 0.36 -20.57 16 5 C -0.06 -1.70 2.16 -11.54 -0.02 -1.72 16 6 H 0.14 3.06 8.14 -2.39 -0.02 3.04 16 7 C -0.10 -1.77 5.13 30.60 0.16 -1.62 16 8 C -0.11 -1.64 5.92 30.60 0.18 -1.46 16 9 C -0.11 -2.16 5.92 30.60 0.18 -1.98 16 10 C -0.10 -2.61 4.95 30.61 0.15 -2.46 16 11 C -0.56 -17.82 1.99 30.61 0.06 -17.76 16 12 H 0.13 4.68 8.10 -2.39 -0.02 4.66 16 13 S 2.59 107.86 4.34 -56.49 -0.25 107.62 16 14 O -0.97 -50.15 13.39 -118.20 -1.58 -51.73 16 15 O -0.99 -40.64 16.46 -127.65 -2.10 -42.74 16 16 N -0.99 -42.48 2.42 -520.46 -1.26 -43.74 16 17 C 0.09 3.23 9.27 127.77 1.18 4.41 16 18 C 0.28 14.25 2.49 44.24 0.11 14.36 16 19 H 0.02 0.89 7.17 -2.39 -0.02 0.87 16 20 C -0.14 -6.95 8.83 71.98 0.64 -6.31 16 21 C -0.52 -26.76 8.31 25.60 0.21 -26.55 16 22 H 0.08 3.68 7.37 -2.91 -0.02 3.66 16 23 C 0.01 0.65 5.30 84.66 0.45 1.10 16 24 N -0.92 -52.76 11.39 21.45 0.24 -52.51 16 25 Si 0.96 41.36 29.54 68.60 2.03 43.39 16 26 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 27 H -0.29 -12.26 7.11 99.48 0.71 -11.56 16 28 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 29 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 31 H 0.05 1.28 8.13 -2.39 -0.02 1.26 16 32 H 0.10 1.46 8.11 -2.39 -0.02 1.44 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.08 2.34 6.30 -2.38 -0.02 2.33 16 40 H 0.07 2.03 6.89 -2.39 -0.02 2.02 16 41 H 0.07 2.43 6.87 -2.39 -0.02 2.42 16 42 H 0.07 2.53 6.82 -2.39 -0.02 2.52 16 43 H 0.04 2.14 7.09 -2.39 -0.02 2.12 16 44 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.06 3.62 6.26 -2.39 -0.01 3.61 16 46 H 0.26 14.24 8.31 -92.70 -0.77 13.47 16 Total: -1.00 -75.00 367.90 2.85 -72.15 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.96 Total: 22.13 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: 4.99 Total: -24.42 kcal Atomic # 7 Polarization: -95.23 SS G_CDS: -1.01 Total: -96.25 kcal Atomic # 8 Polarization: -120.75 SS G_CDS: -3.86 Total: -124.61 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 16 Polarization: 107.86 SS G_CDS: -0.25 Total: 107.62 kcal Total: -75.00 2.85 -72.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330861607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.550 kcal (2) G-P(sol) polarization free energy of solvation -75.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds