Wall clock time and date at job start Tue Mar 31 2020 18:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 116.99798 * 2 1 4 4 O 1.20824 * 119.99959 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99900 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47152 * 60.00249 * 5 3 2 7 7 C 1.53002 * 109.46966 * 300.00390 * 5 3 2 8 8 C 1.52996 * 109.46972 * 299.99823 * 7 5 3 9 9 C 1.53008 * 109.47409 * 300.00085 * 8 7 5 10 10 C 1.52993 * 109.46733 * 60.00092 * 9 8 7 11 11 C 1.52996 * 109.47473 * 300.00094 * 10 9 8 12 12 H 1.09004 * 109.47368 * 300.00213 * 11 10 9 13 13 S 1.81399 * 109.47374 * 180.02562 * 11 10 9 14 14 O 1.42100 * 110.54465 * 171.62176 * 13 11 10 15 15 O 1.42096 * 110.54257 * 308.37608 * 13 11 10 16 16 N 1.65600 * 104.44908 * 60.00216 * 13 11 10 17 17 C 1.46503 * 119.99728 * 269.99917 * 16 13 11 18 18 C 1.46498 * 120.00381 * 89.99891 * 16 13 11 19 19 H 1.09002 * 109.46830 * 0.02562 * 18 16 13 20 20 C 1.53006 * 109.47122 * 119.99949 * 18 16 13 21 21 C 1.50705 * 109.47229 * 240.00026 * 18 16 13 22 22 H 1.07991 * 119.99909 * 359.97438 * 21 18 16 23 23 C 1.37869 * 119.99843 * 180.02562 * 21 18 16 24 24 N 1.31517 * 120.00564 * 359.97438 * 23 21 18 25 25 Si 1.86801 * 119.99821 * 180.02562 * 23 21 18 26 26 H 1.48498 * 109.47283 * 89.99958 * 25 23 21 27 27 H 1.48506 * 109.47126 * 209.99671 * 25 23 21 28 28 H 1.48499 * 109.47165 * 329.99522 * 25 23 21 29 29 H 1.08993 * 109.47391 * 299.99599 * 1 2 3 30 30 H 1.09000 * 109.47246 * 59.99772 * 1 2 3 31 31 H 1.09001 * 109.46940 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47407 * 60.00310 * 7 5 3 33 33 H 1.09000 * 109.46986 * 180.02562 * 7 5 3 34 34 H 1.09004 * 109.47552 * 60.00305 * 8 7 5 35 35 H 1.09001 * 109.46993 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47021 * 180.02562 * 9 8 7 37 37 H 1.09004 * 109.46943 * 300.00592 * 9 8 7 38 38 H 1.09000 * 109.47250 * 60.00079 * 10 9 8 39 39 H 1.09004 * 109.46862 * 180.02562 * 10 9 8 40 40 H 1.09002 * 109.47049 * 90.00247 * 17 16 13 41 41 H 1.08999 * 109.47416 * 209.99950 * 17 16 13 42 42 H 1.09002 * 109.47063 * 329.99857 * 17 16 13 43 43 H 1.08999 * 109.46767 * 180.02562 * 20 18 16 44 44 H 1.08992 * 109.47025 * 299.99955 * 20 18 16 45 45 H 1.09002 * 109.46954 * 60.00460 * 20 18 16 46 46 H 0.96992 * 120.00728 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7806 -0.8892 7 6 4.1129 0.5815 1.2502 8 6 3.5653 1.2752 2.4990 9 6 3.9991 2.7425 2.4990 10 6 3.4526 3.4358 1.2495 11 6 4.0001 2.7421 0.0006 12 1 5.0886 2.7992 0.0009 13 16 3.3526 3.5646 -1.4809 14 8 3.9927 3.0666 -2.6478 15 8 1.9376 3.6747 -1.4119 16 7 3.8903 5.1258 -1.3551 17 6 3.0742 6.1283 -0.6657 18 6 5.1821 5.5045 -1.9332 19 1 5.6401 4.6332 -2.4012 20 6 4.9700 6.5954 -2.9849 21 6 6.0862 6.0245 -0.8453 22 1 5.7337 6.0689 0.1745 23 6 7.3629 6.4446 -1.1523 24 7 7.7921 6.3911 -2.3943 25 14 8.4838 7.0884 0.1962 26 1 9.2605 5.9623 0.7740 27 1 9.4176 8.0927 -0.3737 28 1 7.6646 7.7222 1.2603 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.8039 -0.4638 1.2502 33 1 5.2013 0.6389 1.2508 34 1 2.4768 1.2182 2.4987 35 1 3.9550 0.7815 3.3893 36 1 3.6094 3.2366 3.3890 37 1 5.0877 2.7996 2.4994 38 1 2.3640 3.3788 1.2491 39 1 3.7620 4.4810 1.2492 40 1 3.3366 6.1454 0.3921 41 1 3.2593 7.1100 -1.1018 42 1 2.0195 5.8754 -0.7745 43 1 5.9311 6.8768 -3.4153 44 1 4.3162 6.2193 -3.7717 45 1 4.5118 7.4669 -2.5172 46 1 8.6905 6.6863 -2.6102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330861609.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:46 Heat of formation + Delta-G solvation = -151.731628 kcal Electronic energy + Delta-G solvation = -29929.891418 eV Core-core repulsion = 25947.320785 eV Total energy + Delta-G solvation = -3982.570632 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.98421 -38.07197 -36.54488 -36.15494 -36.06887 -35.14836 -32.60737 -31.50978 -30.99036 -28.99373 -27.79644 -25.55090 -25.11911 -23.99865 -22.96965 -21.50651 -20.63178 -19.74145 -18.09823 -17.33772 -17.14169 -16.58739 -16.46621 -16.28629 -15.86292 -15.33057 -14.78546 -14.56897 -14.19646 -13.94794 -13.64798 -13.40941 -13.33885 -12.91232 -12.76639 -12.60410 -12.33924 -12.20235 -12.03610 -11.85898 -11.68799 -11.43349 -11.34479 -11.26921 -11.13311 -11.05058 -10.96919 -10.94992 -10.80610 -10.47326 -10.38299 -10.27392 -10.22618 -9.99177 -9.91338 -9.66180 -9.14228 -8.47856 -7.83481 -6.08881 -4.17961 0.96069 2.21082 2.62179 3.23423 3.31247 3.32556 3.43087 4.20347 4.35465 4.43297 4.49580 4.69489 4.83035 4.90592 5.04997 5.07017 5.13911 5.21117 5.22837 5.27388 5.35032 5.45104 5.49584 5.68349 5.74179 5.81107 5.88078 6.01456 6.06371 6.11819 6.13990 6.28407 6.33758 6.47148 6.56284 6.71810 6.88413 6.94234 7.15793 7.53462 7.65824 7.75451 7.80835 8.06655 8.28052 8.86130 9.48831 10.95948 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016754 B = 0.004880 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.880112 B = 5735.757988 C = 6577.068356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.423 3.577 4 O -0.441 6.441 5 C -0.064 4.064 6 H 0.117 0.883 7 C -0.101 4.101 8 C -0.123 4.123 9 C -0.113 4.113 10 C -0.113 4.113 11 C -0.584 4.584 12 H 0.151 0.849 13 S 2.599 3.401 14 O -0.966 6.966 15 O -0.939 6.939 16 N -0.980 5.980 17 C 0.098 3.902 18 C 0.265 3.735 19 H 0.058 0.942 20 C -0.145 4.145 21 C -0.527 4.527 22 H 0.063 0.937 23 C 0.065 3.935 24 N -0.886 5.886 25 Si 0.894 3.106 26 H -0.281 1.281 27 H -0.286 1.286 28 H -0.274 1.274 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.042 0.958 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.013 0.987 45 H 0.033 0.967 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.551 -11.097 8.670 17.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.263 3.737 4 O -0.324 6.324 5 C -0.085 4.085 6 H 0.135 0.865 7 C -0.139 4.139 8 C -0.161 4.161 9 C -0.151 4.151 10 C -0.151 4.151 11 C -0.691 4.691 12 H 0.169 0.831 13 S 2.691 3.309 14 O -0.956 6.956 15 O -0.929 6.929 16 N -0.819 5.819 17 C -0.048 4.048 18 C 0.162 3.838 19 H 0.076 0.924 20 C -0.204 4.204 21 C -0.567 4.567 22 H 0.081 0.919 23 C -0.138 4.138 24 N -0.525 5.525 25 Si 0.722 3.278 26 H -0.207 1.207 27 H -0.212 1.212 28 H -0.199 1.199 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.117 0.883 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.061 0.939 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.111 0.889 44 H 0.032 0.968 45 H 0.052 0.948 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.156 -11.080 7.852 16.958 hybrid contribution 1.098 0.460 1.259 1.733 sum -9.057 -10.620 9.111 16.668 Atomic orbital electron populations 1.23269 0.76443 1.03373 1.02894 1.86451 1.23276 1.33221 1.84658 1.23927 0.92163 0.82327 0.75244 1.90966 1.66524 1.34183 1.40727 1.20769 0.88041 0.95987 1.03682 0.86547 1.21466 1.01689 0.99007 0.91737 1.21603 1.00571 0.96366 0.97518 1.21479 1.01403 0.94753 0.97464 1.21591 1.02609 0.99761 0.91125 1.30624 1.13504 1.03319 1.21613 0.83120 1.05319 0.74801 0.74778 0.75969 1.93566 1.77877 1.80702 1.43456 1.93614 1.27526 1.84973 1.86738 1.57364 1.31724 1.23327 1.69496 1.21320 0.93703 0.93685 0.96064 1.18741 0.77271 0.95784 0.91971 0.92395 1.22045 1.02068 0.98678 0.97625 1.21424 0.97549 1.43282 0.94419 0.91871 1.24925 0.97887 0.95513 0.95474 1.69882 1.18079 1.47167 1.17328 0.86565 0.80556 0.78742 0.81922 1.20690 1.21187 1.19895 0.91912 0.91572 0.88303 0.90295 0.89726 0.92378 0.91301 0.91617 0.91295 0.88574 0.89580 0.93913 0.90787 0.91617 0.88925 0.96790 0.94835 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.59 10.47 -39.25 -0.41 -5.00 16 3 C 0.42 6.33 5.41 36.01 0.19 6.52 16 4 O -0.44 -7.71 9.47 -27.11 -0.26 -7.96 16 5 C -0.06 -0.89 2.65 -91.77 -0.24 -1.13 16 6 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 7 C -0.10 -1.08 5.39 -26.73 -0.14 -1.22 16 8 C -0.12 -1.31 5.70 -26.73 -0.15 -1.46 16 9 C -0.11 -1.36 5.92 -26.73 -0.16 -1.51 16 10 C -0.11 -1.67 4.66 -26.74 -0.12 -1.79 16 11 C -0.58 -9.32 2.55 -26.73 -0.07 -9.39 16 12 H 0.15 2.34 8.14 -51.92 -0.42 1.91 16 13 S 2.60 52.44 4.53 -107.50 -0.49 51.95 16 14 O -0.97 -22.53 16.57 -57.54 -0.95 -23.48 16 15 O -0.94 -19.91 12.64 -67.55 -0.85 -20.77 16 16 N -0.98 -20.73 2.77 -115.84 -0.32 -21.05 16 17 C 0.10 1.81 9.29 59.85 0.56 2.37 16 18 C 0.27 6.53 2.57 -69.08 -0.18 6.35 16 19 H 0.06 1.57 6.87 -51.93 -0.36 1.21 16 20 C -0.14 -3.51 8.95 37.16 0.33 -3.18 16 21 C -0.53 -13.37 8.37 -34.44 -0.29 -13.66 16 22 H 0.06 1.54 7.64 -52.49 -0.40 1.14 16 23 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 24 N -0.89 -24.24 11.32 55.43 0.63 -23.61 16 25 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 29 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 30 H 0.07 0.71 8.13 -51.93 -0.42 0.28 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.72 8.11 -51.93 -0.42 0.30 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.65 7.22 -51.93 -0.37 0.28 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.10 1.50 5.50 -51.93 -0.29 1.21 16 39 H 0.09 1.31 5.91 -51.93 -0.31 1.01 16 40 H 0.04 0.71 6.60 -51.93 -0.34 0.37 16 41 H 0.07 1.36 6.43 -51.93 -0.33 1.03 16 42 H 0.07 1.14 6.91 -51.93 -0.36 0.79 16 43 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 44 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.03 0.75 6.66 -51.93 -0.35 0.41 16 46 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 359.58 15.07 5.42 5.42 Total: -1.00 -32.16 359.58 -8.76 -40.92 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.20 Total: 3.55 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 0.70 Total: -15.11 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.31 Total: -44.66 kcal Atomic # 8 Polarization: -54.74 SS G_CDS: -2.47 Total: -57.21 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 52.44 SS G_CDS: -0.49 Total: 51.95 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.16 -8.76 -40.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330861609.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.808 kcal (2) G-P(sol) polarization free energy of solvation -32.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds