Wall clock time and date at job start Tue Mar 31 2020 18:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 116.99798 * 2 1 4 4 O 1.20824 * 119.99959 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99900 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47152 * 60.00249 * 5 3 2 7 7 C 1.53002 * 109.46966 * 300.00390 * 5 3 2 8 8 C 1.52996 * 109.46972 * 299.99823 * 7 5 3 9 9 C 1.53008 * 109.47409 * 300.00085 * 8 7 5 10 10 C 1.52993 * 109.46733 * 60.00092 * 9 8 7 11 11 C 1.52996 * 109.47473 * 300.00094 * 10 9 8 12 12 H 1.09004 * 109.47368 * 300.00213 * 11 10 9 13 13 S 1.81399 * 109.47374 * 180.02562 * 11 10 9 14 14 O 1.42100 * 110.54465 * 171.62176 * 13 11 10 15 15 O 1.42096 * 110.54257 * 308.37608 * 13 11 10 16 16 N 1.65600 * 104.44908 * 60.00216 * 13 11 10 17 17 C 1.46503 * 119.99728 * 269.99917 * 16 13 11 18 18 C 1.46498 * 120.00381 * 89.99891 * 16 13 11 19 19 H 1.09002 * 109.46830 * 0.02562 * 18 16 13 20 20 C 1.53006 * 109.47122 * 119.99949 * 18 16 13 21 21 C 1.50705 * 109.47229 * 240.00026 * 18 16 13 22 22 H 1.07991 * 119.99909 * 359.97438 * 21 18 16 23 23 C 1.37869 * 119.99843 * 180.02562 * 21 18 16 24 24 N 1.31517 * 120.00564 * 359.97438 * 23 21 18 25 25 Si 1.86801 * 119.99821 * 180.02562 * 23 21 18 26 26 H 1.48498 * 109.47283 * 89.99958 * 25 23 21 27 27 H 1.48506 * 109.47126 * 209.99671 * 25 23 21 28 28 H 1.48499 * 109.47165 * 329.99522 * 25 23 21 29 29 H 1.08993 * 109.47391 * 299.99599 * 1 2 3 30 30 H 1.09000 * 109.47246 * 59.99772 * 1 2 3 31 31 H 1.09001 * 109.46940 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47407 * 60.00310 * 7 5 3 33 33 H 1.09000 * 109.46986 * 180.02562 * 7 5 3 34 34 H 1.09004 * 109.47552 * 60.00305 * 8 7 5 35 35 H 1.09001 * 109.46993 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47021 * 180.02562 * 9 8 7 37 37 H 1.09004 * 109.46943 * 300.00592 * 9 8 7 38 38 H 1.09000 * 109.47250 * 60.00079 * 10 9 8 39 39 H 1.09004 * 109.46862 * 180.02562 * 10 9 8 40 40 H 1.09002 * 109.47049 * 90.00247 * 17 16 13 41 41 H 1.08999 * 109.47416 * 209.99950 * 17 16 13 42 42 H 1.09002 * 109.47063 * 329.99857 * 17 16 13 43 43 H 1.08999 * 109.46767 * 180.02562 * 20 18 16 44 44 H 1.08992 * 109.47025 * 299.99955 * 20 18 16 45 45 H 1.09002 * 109.46954 * 60.00460 * 20 18 16 46 46 H 0.96992 * 120.00728 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7806 -0.8892 7 6 4.1129 0.5815 1.2502 8 6 3.5653 1.2752 2.4990 9 6 3.9991 2.7425 2.4990 10 6 3.4526 3.4358 1.2495 11 6 4.0001 2.7421 0.0006 12 1 5.0886 2.7992 0.0009 13 16 3.3526 3.5646 -1.4809 14 8 3.9927 3.0666 -2.6478 15 8 1.9376 3.6747 -1.4119 16 7 3.8903 5.1258 -1.3551 17 6 3.0742 6.1283 -0.6657 18 6 5.1821 5.5045 -1.9332 19 1 5.6401 4.6332 -2.4012 20 6 4.9700 6.5954 -2.9849 21 6 6.0862 6.0245 -0.8453 22 1 5.7337 6.0689 0.1745 23 6 7.3629 6.4446 -1.1523 24 7 7.7921 6.3911 -2.3943 25 14 8.4838 7.0884 0.1962 26 1 9.2605 5.9623 0.7740 27 1 9.4176 8.0927 -0.3737 28 1 7.6646 7.7222 1.2603 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.8039 -0.4638 1.2502 33 1 5.2013 0.6389 1.2508 34 1 2.4768 1.2182 2.4987 35 1 3.9550 0.7815 3.3893 36 1 3.6094 3.2366 3.3890 37 1 5.0877 2.7996 2.4994 38 1 2.3640 3.3788 1.2491 39 1 3.7620 4.4810 1.2492 40 1 3.3366 6.1454 0.3921 41 1 3.2593 7.1100 -1.1018 42 1 2.0195 5.8754 -0.7745 43 1 5.9311 6.8768 -3.4153 44 1 4.3162 6.2193 -3.7717 45 1 4.5118 7.4669 -2.5172 46 1 8.6905 6.6863 -2.6102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330861609.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:45 Heat of formation + Delta-G solvation = -171.819024 kcal Electronic energy + Delta-G solvation = -29930.762473 eV Core-core repulsion = 25947.320785 eV Total energy + Delta-G solvation = -3983.441687 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.09125 -39.10054 -38.16332 -37.87129 -37.30929 -36.79396 -34.50240 -32.54513 -32.07758 -30.84698 -28.65915 -27.32091 -26.96964 -25.05584 -24.02126 -22.67721 -22.34186 -20.82423 -19.68048 -18.66568 -18.44919 -18.23130 -18.05846 -17.48626 -17.09968 -16.89343 -16.32426 -15.90401 -15.28349 -15.14596 -15.07249 -14.74594 -14.62549 -14.41303 -14.15776 -13.74614 -13.60889 -13.45293 -13.38070 -13.26480 -13.12989 -12.96951 -12.87880 -12.82703 -12.70979 -12.53566 -12.49941 -12.22012 -12.12642 -12.10353 -11.90350 -11.80732 -11.59524 -11.29741 -11.20463 -10.98636 -10.80516 -10.47661 -9.53179 -8.06482 -6.22353 -0.59231 1.08186 1.47350 1.49484 1.58282 1.60115 1.84257 2.47414 2.88482 3.13202 3.21490 3.21646 3.58832 3.70802 3.92603 4.06699 4.08979 4.18190 4.24518 4.32500 4.33852 4.35637 4.41249 4.66020 4.70299 4.75625 4.80335 4.85183 4.94315 4.96947 5.04158 5.11233 5.12527 5.16956 5.18876 5.22679 5.27613 5.32938 5.52174 5.62188 5.75566 5.87192 6.10699 6.31207 6.65243 6.88003 7.48031 8.98264 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016754 B = 0.004880 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.880112 B = 5735.757988 C = 6577.068356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.356 6.356 3 C 0.423 3.577 4 O -0.473 6.473 5 C -0.073 4.073 6 H 0.125 0.875 7 C -0.097 4.097 8 C -0.122 4.122 9 C -0.111 4.111 10 C -0.115 4.115 11 C -0.558 4.558 12 H 0.157 0.843 13 S 2.589 3.411 14 O -1.009 7.009 15 O -0.955 6.955 16 N -0.989 5.989 17 C 0.095 3.905 18 C 0.270 3.730 19 H 0.025 0.975 20 C -0.140 4.140 21 C -0.529 4.529 22 H 0.073 0.927 23 C 0.017 3.983 24 N -0.920 5.920 25 Si 0.959 3.041 26 H -0.275 1.275 27 H -0.290 1.290 28 H -0.264 1.264 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.137 0.863 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.051 0.949 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.013 0.987 45 H 0.044 0.956 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.407 -12.394 11.686 19.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.264 3.736 4 O -0.359 6.359 5 C -0.094 4.094 6 H 0.143 0.857 7 C -0.135 4.135 8 C -0.159 4.159 9 C -0.149 4.149 10 C -0.153 4.153 11 C -0.670 4.670 12 H 0.175 0.825 13 S 2.687 3.313 14 O -1.000 7.000 15 O -0.945 6.945 16 N -0.827 5.827 17 C -0.050 4.050 18 C 0.166 3.834 19 H 0.043 0.957 20 C -0.200 4.200 21 C -0.569 4.569 22 H 0.091 0.909 23 C -0.183 4.183 24 N -0.559 5.559 25 Si 0.784 3.216 26 H -0.200 1.200 27 H -0.216 1.216 28 H -0.188 1.188 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.155 0.845 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.070 0.930 35 H 0.114 0.886 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.032 0.968 45 H 0.063 0.937 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.055 -12.359 10.828 19.264 hybrid contribution 0.942 0.771 0.323 1.259 sum -9.113 -11.588 11.151 18.485 Atomic orbital electron populations 1.23589 0.74830 1.05807 1.02523 1.86440 1.24826 1.31908 1.84056 1.24144 0.92605 0.82490 0.74363 1.90956 1.67245 1.35269 1.42424 1.20989 0.87819 0.94489 1.06117 0.85709 1.21567 1.02418 0.99732 0.89771 1.21629 1.00286 0.95467 0.98536 1.21508 1.01587 0.95649 0.96160 1.21650 1.02226 0.99611 0.91784 1.30289 1.13433 1.04598 1.18644 0.82488 1.05387 0.74420 0.74631 0.76834 1.93504 1.78326 1.81147 1.47027 1.93592 1.28407 1.85119 1.87404 1.57220 1.30672 1.24611 1.70228 1.21458 0.93731 0.92929 0.96865 1.18423 0.78654 0.94292 0.92012 0.95745 1.21958 1.00962 0.99266 0.97785 1.21652 0.97694 1.42678 0.94826 0.90894 1.25708 0.99377 0.95813 0.97404 1.70026 1.18399 1.48188 1.19269 0.85548 0.78583 0.78079 0.79358 1.20045 1.21598 1.18829 0.91473 0.92846 0.84483 0.88090 0.88312 0.93043 0.88563 0.90167 0.90824 0.89389 0.90357 0.92003 0.91057 0.90949 0.90991 0.96820 0.93665 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.36 -8.43 10.47 -51.38 -0.54 -8.97 16 3 C 0.42 12.15 5.41 71.24 0.39 12.53 16 4 O -0.47 -16.42 9.47 29.96 0.28 -16.14 16 5 C -0.07 -1.90 2.65 -11.54 -0.03 -1.93 16 6 H 0.13 3.01 8.14 -2.39 -0.02 2.99 16 7 C -0.10 -1.74 5.39 30.59 0.16 -1.57 16 8 C -0.12 -2.14 5.70 30.60 0.17 -1.96 16 9 C -0.11 -2.31 5.92 30.59 0.18 -2.13 16 10 C -0.11 -3.20 4.66 30.59 0.14 -3.06 16 11 C -0.56 -17.31 2.55 30.59 0.08 -17.23 16 12 H 0.16 4.71 8.14 -2.39 -0.02 4.69 16 13 S 2.59 106.77 4.53 -56.49 -0.26 106.52 16 14 O -1.01 -49.16 16.57 -127.65 -2.12 -51.27 16 15 O -0.96 -41.47 12.64 -118.08 -1.49 -42.97 16 16 N -0.99 -42.52 2.77 -520.42 -1.44 -43.96 16 17 C 0.10 3.51 9.29 127.77 1.19 4.69 16 18 C 0.27 13.62 2.57 44.25 0.11 13.74 16 19 H 0.02 1.40 6.87 -2.39 -0.02 1.38 16 20 C -0.14 -7.02 8.95 71.98 0.64 -6.37 16 21 C -0.53 -26.75 8.37 25.60 0.21 -26.53 16 22 H 0.07 3.47 7.64 -2.92 -0.02 3.45 16 23 C 0.02 0.86 5.30 84.65 0.45 1.31 16 24 N -0.92 -51.10 11.32 21.44 0.24 -50.86 16 25 Si 0.96 40.73 29.54 68.60 2.03 42.76 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 H -0.29 -12.42 7.11 99.48 0.71 -11.72 16 28 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 29 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16 30 H 0.05 1.11 8.13 -2.39 -0.02 1.09 16 31 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.10 1.43 8.11 -2.39 -0.02 1.41 16 33 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.05 0.99 7.22 -2.39 -0.02 0.97 16 35 H 0.10 1.22 8.14 -2.39 -0.02 1.21 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.09 2.66 5.50 -2.39 -0.01 2.65 16 39 H 0.08 2.28 5.91 -2.38 -0.01 2.27 16 40 H 0.06 2.01 6.60 -2.39 -0.02 1.99 16 41 H 0.07 2.61 6.43 -2.39 -0.02 2.60 16 42 H 0.07 2.54 6.91 -2.39 -0.02 2.52 16 43 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 44 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.04 2.08 6.66 -2.39 -0.02 2.07 16 46 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -70.78 359.58 2.59 -68.19 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.98 Total: 23.55 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 4.90 Total: -26.85 kcal Atomic # 7 Polarization: -93.62 SS G_CDS: -1.20 Total: -94.82 kcal Atomic # 8 Polarization: -115.49 SS G_CDS: -3.86 Total: -119.35 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Atomic # 16 Polarization: 106.77 SS G_CDS: -0.26 Total: 106.52 kcal Total: -70.78 2.59 -68.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330861609.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.631 kcal (2) G-P(sol) polarization free energy of solvation -70.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds