Wall clock time and date at job start Tue Mar 31 2020 16:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47015 * 2 1 4 4 N 1.46499 * 109.46919 * 179.97438 * 3 2 1 5 5 C 1.37091 * 119.99973 * 93.43837 * 4 3 2 6 6 H 1.08006 * 119.99756 * 214.91291 * 5 4 3 7 7 C 1.38951 * 120.00293 * 35.19027 * 5 4 3 8 8 N 1.31411 * 119.99898 * 20.81093 * 7 5 4 9 9 Si 1.86802 * 120.00016 * 200.81909 * 7 5 4 10 10 H 1.48492 * 109.47285 * 89.99664 * 9 7 5 11 11 H 1.48500 * 109.46815 * 209.99790 * 9 7 5 12 12 H 1.48497 * 109.46962 * 329.99373 * 9 7 5 13 13 C 1.34777 * 120.00100 * 273.43411 * 4 3 2 14 14 O 1.21299 * 120.00031 * 0.02562 * 13 4 3 15 15 C 1.50695 * 120.00226 * 179.97438 * 13 4 3 16 16 H 1.08994 * 109.47407 * 325.00161 * 15 13 4 17 17 C 1.53002 * 109.46898 * 85.00175 * 15 13 4 18 18 S 1.81401 * 109.47431 * 205.00079 * 15 13 4 19 19 O 1.42095 * 108.57943 * 299.49038 * 18 15 13 20 20 O 1.42098 * 108.57710 * 70.51405 * 18 15 13 21 21 C 1.81399 * 101.92227 * 185.00038 * 18 15 13 22 22 C 1.53175 * 109.54622 * 304.82482 * 21 18 15 23 23 C 1.53103 * 109.15925 * 183.24052 * 22 21 18 24 24 O 1.42903 * 109.48598 * 57.47452 * 23 22 21 25 25 C 1.42904 * 114.09812 * 298.88758 * 24 23 22 26 26 C 1.53102 * 109.41436 * 61.15929 * 25 24 23 27 27 H 1.09000 * 109.47541 * 300.00117 * 1 2 3 28 28 H 1.08999 * 109.47070 * 60.00209 * 1 2 3 29 29 H 1.09007 * 109.47394 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.46997 * 239.99859 * 2 1 3 31 31 H 1.09004 * 109.46897 * 120.00234 * 2 1 3 32 32 H 1.09000 * 109.47189 * 60.00130 * 3 2 1 33 33 H 1.08999 * 109.47031 * 299.99815 * 3 2 1 34 34 H 0.97003 * 119.99815 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.47061 * 179.97438 * 17 15 13 36 36 H 1.09000 * 109.47260 * 300.00260 * 17 15 13 37 37 H 1.09003 * 109.47051 * 60.00401 * 17 15 13 38 38 H 1.08996 * 109.54307 * 65.00395 * 21 18 15 39 39 H 1.09003 * 109.52254 * 303.05742 * 22 21 18 40 40 H 1.08998 * 109.52107 * 63.24357 * 22 21 18 41 41 H 1.08994 * 109.40602 * 297.49408 * 23 22 21 42 42 H 1.09000 * 109.48090 * 177.50123 * 23 22 21 43 43 H 1.08993 * 109.48540 * 301.17746 * 25 24 23 44 44 H 1.08997 * 109.49030 * 181.14331 * 25 24 23 45 45 H 1.08999 * 109.52239 * 182.48748 * 26 25 24 46 46 H 1.09000 * 109.57256 * 62.32680 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1909 1.5135 -1.1842 6 1 5.1252 0.9841 -1.2998 7 6 3.6871 2.2711 -2.2344 8 7 2.8133 3.2236 -1.9974 9 14 4.2518 1.9356 -3.9831 10 1 3.3569 0.9286 -4.6077 11 1 4.2045 3.1950 -4.7687 12 1 5.6431 1.4168 -3.9630 13 6 4.1784 1.3727 1.1660 14 8 3.5715 1.3095 2.2143 15 6 5.6853 1.3721 1.1666 16 1 6.0488 0.8337 0.2914 17 6 6.1959 2.8139 1.1269 18 16 6.2891 0.5581 2.6711 19 8 5.8148 1.2811 3.7986 20 8 6.0159 -0.8330 2.5739 21 6 8.0812 0.8058 2.5378 22 6 8.5762 0.2557 1.1966 23 6 10.0992 0.3956 1.1275 24 8 10.6917 -0.2923 2.2311 25 6 10.3019 0.2119 3.5102 26 6 8.7872 0.0626 3.6760 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 2.4613 3.7522 -2.7306 35 1 7.2859 2.8135 1.1279 36 1 5.8331 3.3031 0.2230 37 1 5.8324 3.3523 2.0023 38 1 8.3079 1.8700 2.6014 39 1 8.3041 -0.7964 1.1117 40 1 8.1200 0.8178 0.3817 41 1 10.3683 1.4510 1.1702 42 1 10.4618 -0.0347 0.1940 43 1 10.5735 1.2649 3.5841 44 1 10.8104 -0.3505 4.2931 45 1 8.4819 0.4868 4.6325 46 1 8.5186 -0.9933 3.6433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331097252.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:00 Heat of formation + Delta-G solvation = -158.769781 kcal Electronic energy + Delta-G solvation = -28940.042312 eV Core-core repulsion = 24957.166482 eV Total energy + Delta-G solvation = -3982.875830 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.43060 -38.95524 -36.58515 -35.61510 -35.31813 -34.33514 -33.20782 -32.41522 -31.41654 -31.07011 -26.18816 -25.64282 -25.03299 -24.10588 -23.51154 -20.99316 -20.73959 -19.44621 -18.46615 -17.41624 -17.21288 -16.41128 -16.24463 -15.90040 -15.46970 -15.31858 -14.89834 -14.74228 -14.44011 -14.19395 -14.06452 -13.89904 -13.77095 -13.09853 -12.85218 -12.61551 -12.41636 -12.18535 -11.90414 -11.69127 -11.64827 -11.60604 -11.53048 -11.50426 -11.44093 -11.34508 -11.19524 -11.08770 -11.05222 -10.78603 -10.46386 -10.41530 -10.36852 -10.05154 -9.79629 -9.50064 -9.27665 -8.73576 -7.72337 -6.55654 -4.26150 0.26243 2.97561 3.07775 3.10088 3.10565 3.57193 3.65991 3.81167 3.95953 4.07875 4.27985 4.52871 4.61073 4.73139 4.76799 4.84333 4.97525 5.16132 5.19154 5.29696 5.33225 5.37087 5.42866 5.48481 5.57837 5.68438 5.72298 5.77382 5.81423 5.88465 5.94892 6.10033 6.12900 6.44174 6.53017 6.57471 6.62231 6.78950 6.94787 7.02384 7.19284 7.36526 7.71289 8.14701 8.84083 9.22067 9.68256 10.44362 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013833 B = 0.004503 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.693325 B = 6216.056812 C = 7481.142267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.138 4.138 3 C 0.111 3.889 4 N -0.416 5.416 5 C -0.345 4.345 6 H 0.092 0.908 7 C 0.047 3.953 8 N -0.852 5.852 9 Si 0.915 3.085 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.486 3.514 14 O -0.591 6.591 15 C -0.573 4.573 16 H 0.149 0.851 17 C -0.129 4.129 18 S 2.438 3.562 19 O -0.918 6.918 20 O -0.938 6.938 21 C -0.588 4.588 22 C -0.150 4.150 23 C 0.069 3.931 24 O -0.381 6.381 25 C 0.071 3.929 26 C -0.143 4.143 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.112 0.888 34 H 0.273 0.727 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.139 0.861 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.055 0.945 42 H 0.101 0.899 43 H 0.055 0.945 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.480 -2.068 2.350 11.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.176 4.176 3 C -0.012 4.012 4 N -0.132 5.132 5 C -0.473 4.473 6 H 0.110 0.890 7 C -0.160 4.160 8 N -0.487 5.487 9 Si 0.741 3.259 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.192 1.192 13 C 0.272 3.728 14 O -0.478 6.478 15 C -0.685 4.685 16 H 0.166 0.834 17 C -0.187 4.187 18 S 2.619 3.381 19 O -0.915 6.915 20 O -0.935 6.935 21 C -0.695 4.695 22 C -0.188 4.188 23 C -0.008 4.008 24 O -0.299 6.299 25 C -0.007 4.007 26 C -0.182 4.182 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.129 0.871 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.090 0.910 38 H 0.157 0.843 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.073 0.927 42 H 0.119 0.881 43 H 0.073 0.927 44 H 0.118 0.882 45 H 0.108 0.892 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.680 -2.513 3.369 11.477 hybrid contribution 0.444 0.606 -1.720 1.877 sum 11.124 -1.908 1.648 11.406 Atomic orbital electron populations 1.21647 0.96337 1.00615 1.01432 1.21855 0.94982 0.99132 1.01643 1.21600 0.80453 0.95041 1.04124 1.43370 1.05079 1.60618 1.04173 1.19439 1.08517 1.29885 0.89493 0.89012 1.25349 0.96823 0.93386 1.00432 1.69910 1.29531 1.16253 1.33019 0.86126 0.79498 0.78151 0.82131 1.19977 1.20799 1.19221 1.18997 0.85852 0.82997 0.84999 1.90706 1.68963 1.57116 1.30983 1.30186 1.06020 1.10499 1.21782 0.83358 1.21489 0.99524 0.91517 1.06193 1.07951 0.76500 0.75969 0.77694 1.93532 1.76988 1.74075 1.46924 1.93518 1.82723 1.30409 1.86811 1.30438 1.26283 1.09388 1.03412 1.22168 0.98928 1.03630 0.94067 1.22505 0.91114 0.97115 0.90100 1.87934 1.68713 1.59267 1.14031 1.22482 0.92848 0.99411 0.85959 1.22016 0.97634 1.01772 0.96731 0.93029 0.92977 0.93464 0.92141 0.92639 0.92479 0.87058 0.91688 0.91893 0.88382 0.90972 0.84317 0.88892 0.88667 0.92683 0.88110 0.92687 0.88219 0.89219 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.91 37.16 0.37 -2.06 16 2 C -0.14 -2.86 6.24 -26.73 -0.17 -3.02 16 3 C 0.11 2.62 4.93 -4.04 -0.02 2.60 16 4 N -0.42 -10.17 2.54 -114.81 -0.29 -10.47 16 5 C -0.35 -8.11 8.29 -14.94 -0.12 -8.23 16 6 H 0.09 2.00 6.38 -52.48 -0.33 1.66 16 7 C 0.05 1.10 4.96 -17.47 -0.09 1.01 16 8 N -0.85 -20.93 11.30 55.50 0.63 -20.30 16 9 Si 0.91 17.99 29.60 -169.99 -5.03 12.96 16 10 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 11 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 12 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 13 C 0.49 11.78 6.74 -10.99 -0.07 11.71 16 14 O -0.59 -16.09 15.12 -9.39 -0.14 -16.23 16 15 C -0.57 -10.79 1.74 -27.88 -0.05 -10.84 16 16 H 0.15 2.47 5.40 -51.93 -0.28 2.19 16 17 C -0.13 -2.06 8.81 37.16 0.33 -1.74 16 18 S 2.44 44.29 3.43 -107.50 -0.37 43.92 16 19 O -0.92 -19.72 17.21 -64.29 -1.11 -20.82 16 20 O -0.94 -19.65 18.04 -57.83 -1.04 -20.69 16 21 C -0.59 -7.21 1.96 -26.55 -0.05 -7.26 16 22 C -0.15 -1.64 5.01 -26.59 -0.13 -1.78 16 23 C 0.07 0.66 6.84 37.21 0.25 0.92 16 24 O -0.38 -4.29 10.77 -35.23 -0.38 -4.67 16 25 C 0.07 0.67 6.84 37.21 0.25 0.93 16 26 C -0.14 -1.62 5.42 -26.59 -0.14 -1.76 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.40 7.53 -51.93 -0.39 1.01 16 33 H 0.11 2.71 5.36 -51.93 -0.28 2.44 16 34 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 35 H 0.06 0.70 6.07 -51.93 -0.32 0.38 16 36 H 0.10 1.73 7.76 -51.93 -0.40 1.33 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.14 1.35 7.07 -51.93 -0.37 0.98 16 39 H 0.09 1.08 8.12 -51.93 -0.42 0.66 16 40 H 0.09 0.90 6.28 -51.93 -0.33 0.58 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 373.01 15.07 5.62 5.62 Total: -1.00 -33.40 373.01 -9.08 -42.48 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -7.33 Total: 7.73 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 0.36 Total: -19.52 kcal Atomic # 7 Polarization: -31.10 SS G_CDS: 0.34 Total: -30.77 kcal Atomic # 8 Polarization: -59.75 SS G_CDS: -2.67 Total: -62.42 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Atomic # 16 Polarization: 44.29 SS G_CDS: -0.37 Total: 43.92 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.40 -9.08 -42.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331097252.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.289 kcal (2) G-P(sol) polarization free energy of solvation -33.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds