Wall clock time and date at job start Tue Mar 31 2020 16:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47015 * 2 1 4 4 N 1.46499 * 109.46919 * 179.97438 * 3 2 1 5 5 C 1.37091 * 119.99973 * 93.43837 * 4 3 2 6 6 H 1.08006 * 119.99756 * 214.91291 * 5 4 3 7 7 C 1.38951 * 120.00293 * 35.19027 * 5 4 3 8 8 N 1.31411 * 119.99898 * 20.81093 * 7 5 4 9 9 Si 1.86802 * 120.00016 * 200.81909 * 7 5 4 10 10 H 1.48492 * 109.47285 * 89.99664 * 9 7 5 11 11 H 1.48500 * 109.46815 * 209.99790 * 9 7 5 12 12 H 1.48497 * 109.46962 * 329.99373 * 9 7 5 13 13 C 1.34777 * 120.00100 * 273.43411 * 4 3 2 14 14 O 1.21299 * 120.00031 * 0.02562 * 13 4 3 15 15 C 1.50695 * 120.00226 * 179.97438 * 13 4 3 16 16 H 1.08994 * 109.47407 * 325.00161 * 15 13 4 17 17 C 1.53002 * 109.46898 * 85.00175 * 15 13 4 18 18 S 1.81401 * 109.47431 * 205.00079 * 15 13 4 19 19 O 1.42095 * 108.57943 * 299.49038 * 18 15 13 20 20 O 1.42098 * 108.57710 * 70.51405 * 18 15 13 21 21 C 1.81399 * 101.92227 * 185.00038 * 18 15 13 22 22 C 1.53175 * 109.54622 * 304.82482 * 21 18 15 23 23 C 1.53103 * 109.15925 * 183.24052 * 22 21 18 24 24 O 1.42903 * 109.48598 * 57.47452 * 23 22 21 25 25 C 1.42904 * 114.09812 * 298.88758 * 24 23 22 26 26 C 1.53102 * 109.41436 * 61.15929 * 25 24 23 27 27 H 1.09000 * 109.47541 * 300.00117 * 1 2 3 28 28 H 1.08999 * 109.47070 * 60.00209 * 1 2 3 29 29 H 1.09007 * 109.47394 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.46997 * 239.99859 * 2 1 3 31 31 H 1.09004 * 109.46897 * 120.00234 * 2 1 3 32 32 H 1.09000 * 109.47189 * 60.00130 * 3 2 1 33 33 H 1.08999 * 109.47031 * 299.99815 * 3 2 1 34 34 H 0.97003 * 119.99815 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.47061 * 179.97438 * 17 15 13 36 36 H 1.09000 * 109.47260 * 300.00260 * 17 15 13 37 37 H 1.09003 * 109.47051 * 60.00401 * 17 15 13 38 38 H 1.08996 * 109.54307 * 65.00395 * 21 18 15 39 39 H 1.09003 * 109.52254 * 303.05742 * 22 21 18 40 40 H 1.08998 * 109.52107 * 63.24357 * 22 21 18 41 41 H 1.08994 * 109.40602 * 297.49408 * 23 22 21 42 42 H 1.09000 * 109.48090 * 177.50123 * 23 22 21 43 43 H 1.08993 * 109.48540 * 301.17746 * 25 24 23 44 44 H 1.08997 * 109.49030 * 181.14331 * 25 24 23 45 45 H 1.08999 * 109.52239 * 182.48748 * 26 25 24 46 46 H 1.09000 * 109.57256 * 62.32680 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1909 1.5135 -1.1842 6 1 5.1252 0.9841 -1.2998 7 6 3.6871 2.2711 -2.2344 8 7 2.8133 3.2236 -1.9974 9 14 4.2518 1.9356 -3.9831 10 1 3.3569 0.9286 -4.6077 11 1 4.2045 3.1950 -4.7687 12 1 5.6431 1.4168 -3.9630 13 6 4.1784 1.3727 1.1660 14 8 3.5715 1.3095 2.2143 15 6 5.6853 1.3721 1.1666 16 1 6.0488 0.8337 0.2914 17 6 6.1959 2.8139 1.1269 18 16 6.2891 0.5581 2.6711 19 8 5.8148 1.2811 3.7986 20 8 6.0159 -0.8330 2.5739 21 6 8.0812 0.8058 2.5378 22 6 8.5762 0.2557 1.1966 23 6 10.0992 0.3956 1.1275 24 8 10.6917 -0.2923 2.2311 25 6 10.3019 0.2119 3.5102 26 6 8.7872 0.0626 3.6760 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 2.4613 3.7522 -2.7306 35 1 7.2859 2.8135 1.1279 36 1 5.8331 3.3031 0.2230 37 1 5.8324 3.3523 2.0023 38 1 8.3079 1.8700 2.6014 39 1 8.3041 -0.7964 1.1117 40 1 8.1200 0.8178 0.3817 41 1 10.3683 1.4510 1.1702 42 1 10.4618 -0.0347 0.1940 43 1 10.5735 1.2649 3.5841 44 1 10.8104 -0.3505 4.2931 45 1 8.4819 0.4868 4.6325 46 1 8.5186 -0.9933 3.6433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331097252.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:58 Heat of formation + Delta-G solvation = -182.647632 kcal Electronic energy + Delta-G solvation = -28941.077733 eV Core-core repulsion = 24957.166482 eV Total energy + Delta-G solvation = -3983.911251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.79791 -40.22700 -38.10011 -37.28718 -37.01663 -35.41221 -34.73764 -33.97906 -32.96274 -32.03957 -27.85347 -26.89321 -26.44148 -25.32653 -24.59735 -22.57874 -21.74551 -21.23058 -19.89946 -19.02393 -18.67234 -17.74274 -17.36162 -17.05511 -16.82200 -16.61300 -16.41585 -16.07619 -15.81100 -15.67167 -15.57264 -15.06142 -14.96245 -14.63434 -14.38121 -13.90323 -13.58617 -13.37490 -13.28433 -13.24148 -13.18992 -13.10208 -13.06368 -12.90130 -12.84896 -12.65202 -12.45301 -12.39675 -12.14378 -12.05575 -12.01707 -11.98725 -11.64161 -11.46939 -11.15732 -11.08175 -10.60446 -10.40268 -9.60703 -8.35191 -6.12826 -1.11443 1.39306 1.50808 1.60037 1.70131 1.82408 2.24110 2.46622 2.88300 2.94006 2.99772 3.02153 3.31925 3.46298 3.75639 3.88313 3.90955 4.00930 4.09791 4.18694 4.25523 4.25893 4.38092 4.47694 4.50907 4.52080 4.56735 4.65561 4.73244 4.75236 4.81525 4.89389 4.90503 5.02447 5.03015 5.08107 5.15404 5.26114 5.28150 5.39299 5.49372 5.88000 6.25990 6.31261 7.00727 7.36301 7.84961 8.66737 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013833 B = 0.004503 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.693325 B = 6216.056812 C = 7481.142267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.130 4.130 3 C 0.108 3.892 4 N -0.427 5.427 5 C -0.361 4.361 6 H 0.109 0.891 7 C 0.011 3.989 8 N -0.885 5.885 9 Si 0.982 3.018 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.248 1.248 13 C 0.461 3.539 14 O -0.636 6.636 15 C -0.573 4.573 16 H 0.169 0.831 17 C -0.127 4.127 18 S 2.418 3.582 19 O -0.967 6.967 20 O -0.982 6.982 21 C -0.545 4.545 22 C -0.159 4.159 23 C 0.068 3.932 24 O -0.399 6.399 25 C 0.072 3.928 26 C -0.155 4.155 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.032 0.968 33 H 0.105 0.895 34 H 0.275 0.725 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.057 0.943 38 H 0.178 0.822 39 H 0.080 0.920 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.117 0.883 43 H 0.079 0.921 44 H 0.117 0.883 45 H 0.099 0.901 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.832 -1.867 0.611 14.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.169 4.169 3 C -0.015 4.015 4 N -0.142 5.142 5 C -0.488 4.488 6 H 0.127 0.873 7 C -0.193 4.193 8 N -0.521 5.521 9 Si 0.805 3.195 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.171 1.171 13 C 0.249 3.751 14 O -0.526 6.526 15 C -0.684 4.684 16 H 0.186 0.814 17 C -0.185 4.185 18 S 2.606 3.394 19 O -0.964 6.964 20 O -0.979 6.979 21 C -0.659 4.659 22 C -0.198 4.198 23 C -0.010 4.010 24 O -0.318 6.318 25 C -0.005 4.005 26 C -0.194 4.194 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.122 0.878 34 H 0.085 0.915 35 H 0.141 0.859 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.195 0.805 39 H 0.099 0.901 40 H 0.133 0.867 41 H 0.099 0.901 42 H 0.135 0.865 43 H 0.097 0.903 44 H 0.135 0.865 45 H 0.117 0.883 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 13.957 -2.321 1.619 14.241 hybrid contribution -0.546 0.557 -1.149 1.389 sum 13.410 -1.764 0.470 13.534 Atomic orbital electron populations 1.21608 0.93295 1.02494 1.01899 1.21776 0.97676 0.96871 1.00537 1.21589 0.81020 0.96517 1.02376 1.43675 1.05393 1.60183 1.04906 1.19876 1.09302 1.30384 0.89251 0.87313 1.26192 0.96624 0.92625 1.03902 1.70010 1.30729 1.17156 1.34250 0.85087 0.79888 0.77605 0.76877 1.20336 1.20961 1.17144 1.19915 0.88490 0.82413 0.84265 1.90658 1.70684 1.58921 1.32381 1.30182 1.02046 1.12777 1.23349 0.81359 1.21584 1.03158 0.89104 1.04634 1.08232 0.79713 0.74696 0.76759 1.93466 1.80029 1.74339 1.48521 1.93452 1.85093 1.32390 1.86969 1.30104 1.18178 1.12215 1.05361 1.22394 1.00737 1.03313 0.93337 1.22705 0.89131 0.98740 0.90409 1.87929 1.68810 1.60177 1.14865 1.22648 0.90667 1.01265 0.85965 1.22240 0.99423 1.00975 0.96723 0.93034 0.92045 0.90849 0.92010 0.94742 0.94976 0.87754 0.91496 0.85915 0.90103 0.92357 0.80477 0.90115 0.86704 0.90146 0.86472 0.90263 0.86469 0.88282 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.62 9.91 71.98 0.71 -3.90 16 2 C -0.13 -5.60 6.24 30.59 0.19 -5.41 16 3 C 0.11 5.38 4.93 86.38 0.43 5.81 16 4 N -0.43 -21.57 2.54 -635.54 -1.62 -23.18 16 5 C -0.36 -16.92 8.29 84.04 0.70 -16.22 16 6 H 0.11 4.58 6.38 -2.91 -0.02 4.57 16 7 C 0.01 0.50 4.96 84.93 0.42 0.92 16 8 N -0.89 -44.00 11.30 21.66 0.24 -43.76 16 9 Si 0.98 35.67 29.60 68.60 2.03 37.70 16 10 H -0.28 -10.21 7.11 99.48 0.71 -9.50 16 11 H -0.28 -10.33 7.11 99.48 0.71 -9.63 16 12 H -0.25 -8.19 7.11 99.48 0.71 -7.48 16 13 C 0.46 23.37 6.74 87.66 0.59 23.96 16 14 O -0.64 -37.04 15.12 11.19 0.17 -36.87 16 15 C -0.57 -21.54 1.74 29.85 0.05 -21.49 16 16 H 0.17 5.42 5.40 -2.39 -0.01 5.40 16 17 C -0.13 -3.88 8.81 71.98 0.63 -3.25 16 18 S 2.42 88.85 3.43 -56.49 -0.19 88.66 16 19 O -0.97 -43.15 17.21 -121.20 -2.09 -45.24 16 20 O -0.98 -42.95 18.04 -127.37 -2.30 -45.24 16 21 C -0.55 -11.75 1.96 30.71 0.06 -11.69 16 22 C -0.16 -2.90 5.01 30.69 0.15 -2.75 16 23 C 0.07 0.96 6.84 72.02 0.49 1.45 16 24 O -0.40 -7.33 10.77 -148.98 -1.60 -8.94 16 25 C 0.07 1.07 6.84 72.02 0.49 1.56 16 26 C -0.15 -3.11 5.42 30.69 0.17 -2.95 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 2.11 8.14 -2.38 -0.02 2.10 16 30 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.03 1.70 7.53 -2.39 -0.02 1.68 16 33 H 0.10 5.30 5.36 -2.39 -0.01 5.29 16 34 H 0.28 12.84 8.31 -92.71 -0.77 12.07 16 35 H 0.12 2.17 6.07 -2.39 -0.01 2.16 16 36 H 0.08 2.78 7.76 -2.39 -0.02 2.76 16 37 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.18 2.52 7.07 -2.39 -0.02 2.50 16 39 H 0.08 1.71 8.12 -2.39 -0.02 1.69 16 40 H 0.11 1.65 6.28 -2.39 -0.01 1.63 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -78.84 373.01 0.71 -78.13 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: 0.97 Total: 32.70 kcal Atomic # 6 Polarization: -39.04 SS G_CDS: 5.09 Total: -33.95 kcal Atomic # 7 Polarization: -65.57 SS G_CDS: -1.37 Total: -66.94 kcal Atomic # 8 Polarization: -130.47 SS G_CDS: -5.82 Total: -136.29 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: 2.03 Total: 37.70 kcal Atomic # 16 Polarization: 88.85 SS G_CDS: -0.19 Total: 88.66 kcal Total: -78.84 0.71 -78.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331097252.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.517 kcal (2) G-P(sol) polarization free energy of solvation -78.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds